Protein–RNA interactions for Protein: Q9NUP1

BLOC1S4, Biogenesis of lysosome-related organelles complex 1 subunit 4, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BLOC1S4Q9NUP1 PDF-201ENST00000288022 1158 ntAPPRIS P1 TSL 1 (best) BASIC27.74■■■□□ 2.03
BLOC1S4Q9NUP1 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC27.74■■■□□ 2.03
BLOC1S4Q9NUP1 C12orf75-201ENST00000443585 1366 ntAPPRIS P1 TSL 2 BASIC27.73■■■□□ 2.03
BLOC1S4Q9NUP1 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC27.73■■■□□ 2.03
BLOC1S4Q9NUP1 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC27.73■■■□□ 2.03
BLOC1S4Q9NUP1 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC27.73■■■□□ 2.03
BLOC1S4Q9NUP1 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC27.73■■■□□ 2.03
BLOC1S4Q9NUP1 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC27.73■■■□□ 2.03
BLOC1S4Q9NUP1 AC078883.1-202ENST00000450443 1397 ntTSL 3 BASIC27.73■■■□□ 2.03
BLOC1S4Q9NUP1 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC27.72■■■□□ 2.03
BLOC1S4Q9NUP1 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC27.72■■■□□ 2.03
BLOC1S4Q9NUP1 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC27.71■■■□□ 2.03
BLOC1S4Q9NUP1 LSM7-201ENST00000252622 529 ntAPPRIS P1 TSL 1 (best) BASIC27.71■■■□□ 2.03
BLOC1S4Q9NUP1 YBX2-201ENST00000007699 1590 ntAPPRIS P1 TSL 1 (best) BASIC27.71■■■□□ 2.03
BLOC1S4Q9NUP1 POU3F3-201ENST00000361360 3064 ntAPPRIS P1 BASIC27.71■■■□□ 2.03
BLOC1S4Q9NUP1 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC27.71■■■□□ 2.03
BLOC1S4Q9NUP1 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC27.7■■■□□ 2.03
BLOC1S4Q9NUP1 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC27.7■■■□□ 2.03
BLOC1S4Q9NUP1 STARD10-220ENST00000545082 1085 ntTSL 3 BASIC27.7■■■□□ 2.02
BLOC1S4Q9NUP1 NXPH3-201ENST00000328741 2179 ntAPPRIS P1 TSL 1 (best) BASIC27.7■■■□□ 2.02
BLOC1S4Q9NUP1 ATOH7-201ENST00000373673 1480 ntAPPRIS P1 BASIC27.7■■■□□ 2.02
BLOC1S4Q9NUP1 KCNG2-201ENST00000316249 1401 ntAPPRIS P1 TSL 1 (best) BASIC27.69■■■□□ 2.02
BLOC1S4Q9NUP1 LINC01918-201ENST00000436841 797 ntTSL 2 BASIC27.68■■■□□ 2.02
BLOC1S4Q9NUP1 MBP-237ENST00000579129 1052 ntTSL 5 BASIC27.68■■■□□ 2.02
BLOC1S4Q9NUP1 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC27.67■■■□□ 2.02
BLOC1S4Q9NUP1 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC27.67■■■□□ 2.02
BLOC1S4Q9NUP1 ZNF219-201ENST00000360947 3071 ntAPPRIS P1 TSL 1 (best) BASIC27.67■■■□□ 2.02
BLOC1S4Q9NUP1 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC27.67■■■□□ 2.02
BLOC1S4Q9NUP1 PURG-201ENST00000339382 2693 ntTSL 1 (best) BASIC27.66■■■□□ 2.02
BLOC1S4Q9NUP1 AP004609.3-201ENST00000610705 1884 ntBASIC27.66■■■□□ 2.02
BLOC1S4Q9NUP1 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC27.66■■■□□ 2.02
BLOC1S4Q9NUP1 MAP4K3-211ENST00000484274 407 ntTSL 2 BASIC27.66■■■□□ 2.02
BLOC1S4Q9NUP1 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC27.66■■■□□ 2.02
BLOC1S4Q9NUP1 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC27.66■■■□□ 2.02
BLOC1S4Q9NUP1 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC27.65■■■□□ 2.02
BLOC1S4Q9NUP1 SLC35A2-207ENST00000445167 1739 ntTSL 1 (best) BASIC27.65■■■□□ 2.02
BLOC1S4Q9NUP1 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC27.65■■■□□ 2.02
BLOC1S4Q9NUP1 WDR86-204ENST00000477459 1428 ntTSL 2 BASIC27.65■■■□□ 2.02
BLOC1S4Q9NUP1 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC27.64■■■□□ 2.02
BLOC1S4Q9NUP1 HOXD-AS2-201ENST00000426965 927 ntTSL 1 (best) BASIC27.64■■■□□ 2.02
BLOC1S4Q9NUP1 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC27.64■■■□□ 2.02
BLOC1S4Q9NUP1 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC27.63■■■□□ 2.01
BLOC1S4Q9NUP1 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC27.63■■■□□ 2.01
BLOC1S4Q9NUP1 AL359258.2-201ENST00000564063 1566 ntBASIC27.63■■■□□ 2.01
BLOC1S4Q9NUP1 AC142472.1-201ENST00000612013 1741 ntBASIC27.62■■■□□ 2.01
BLOC1S4Q9NUP1 KCTD15-206ENST00000588881 1211 ntAPPRIS P1 TSL 2 BASIC27.62■■■□□ 2.01
BLOC1S4Q9NUP1 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC27.62■■■□□ 2.01
BLOC1S4Q9NUP1 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC27.62■■■□□ 2.01
BLOC1S4Q9NUP1 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC27.61■■■□□ 2.01
BLOC1S4Q9NUP1 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC27.61■■■□□ 2.01
BLOC1S4Q9NUP1 BAX-202ENST00000345358 793 ntAPPRIS P1 TSL 1 (best) BASIC27.61■■■□□ 2.01
BLOC1S4Q9NUP1 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC27.61■■■□□ 2.01
BLOC1S4Q9NUP1 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC27.61■■■□□ 2.01
BLOC1S4Q9NUP1 MIR4449-201ENST00000578365 66 ntBASIC27.61■■■□□ 2.01
BLOC1S4Q9NUP1 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC27.61■■■□□ 2.01
BLOC1S4Q9NUP1 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC27.61■■■□□ 2.01
BLOC1S4Q9NUP1 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC27.61■■■□□ 2.01
BLOC1S4Q9NUP1 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC27.61■■■□□ 2.01
BLOC1S4Q9NUP1 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC27.61■■■□□ 2.01
BLOC1S4Q9NUP1 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC27.61■■■□□ 2.01
BLOC1S4Q9NUP1 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC27.61■■■□□ 2.01
BLOC1S4Q9NUP1 PQLC3-201ENST00000295083 1830 ntAPPRIS P1 TSL 1 (best) BASIC27.61■■■□□ 2.01
BLOC1S4Q9NUP1 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC27.61■■■□□ 2.01
BLOC1S4Q9NUP1 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC27.61■■■□□ 2.01
BLOC1S4Q9NUP1 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC27.61■■■□□ 2.01
BLOC1S4Q9NUP1 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC27.6■■■□□ 2.01
BLOC1S4Q9NUP1 TAF10-201ENST00000299424 1215 ntAPPRIS P1 TSL 1 (best) BASIC27.6■■■□□ 2.01
BLOC1S4Q9NUP1 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC27.6■■■□□ 2.01
BLOC1S4Q9NUP1 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC27.6■■■□□ 2.01
BLOC1S4Q9NUP1 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC27.6■■■□□ 2.01
BLOC1S4Q9NUP1 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC27.6■■■□□ 2.01
BLOC1S4Q9NUP1 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC27.6■■■□□ 2.01
BLOC1S4Q9NUP1 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC27.6■■■□□ 2.01
BLOC1S4Q9NUP1 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC27.59■■■□□ 2.01
BLOC1S4Q9NUP1 RPARP-AS1-205ENST00000596045 431 ntTSL 3 BASIC27.59■■■□□ 2.01
BLOC1S4Q9NUP1 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC27.59■■■□□ 2.01
BLOC1S4Q9NUP1 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC27.58■■■□□ 2.01
BLOC1S4Q9NUP1 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC27.58■■■□□ 2.01
BLOC1S4Q9NUP1 SOD3-201ENST00000382120 1526 ntAPPRIS P1 TSL 1 (best) BASIC27.57■■■□□ 2
BLOC1S4Q9NUP1 SRP68-213ENST00000629930 165 ntTSL 5 BASIC27.57■■■□□ 2
BLOC1S4Q9NUP1 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC27.56■■■□□ 2
BLOC1S4Q9NUP1 HSD17B12-202ENST00000395700 994 ntTSL 1 (best) BASIC27.56■■■□□ 2
BLOC1S4Q9NUP1 MDFIC-203ENST00000423503 474 ntTSL 1 (best) BASIC27.56■■■□□ 2
BLOC1S4Q9NUP1 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC27.56■■■□□ 2
BLOC1S4Q9NUP1 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC27.56■■■□□ 2
BLOC1S4Q9NUP1 CACNG7-203ENST00000391767 2688 ntAPPRIS P1 TSL 5 BASIC27.55■■■□□ 2
BLOC1S4Q9NUP1 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC27.55■■■□□ 2
BLOC1S4Q9NUP1 FAM168B-201ENST00000389915 944 ntAPPRIS P1 TSL 3 BASIC27.55■■■□□ 2
BLOC1S4Q9NUP1 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC27.55■■■□□ 2
BLOC1S4Q9NUP1 AJAP1-201ENST00000378190 2383 ntAPPRIS P1 TSL 5 BASIC27.55■■■□□ 2
BLOC1S4Q9NUP1 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC27.54■■■□□ 2
BLOC1S4Q9NUP1 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC27.54■■■□□ 2
BLOC1S4Q9NUP1 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC27.54■■■□□ 2
BLOC1S4Q9NUP1 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC27.53■■■□□ 2
BLOC1S4Q9NUP1 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC27.53■■■□□ 2
BLOC1S4Q9NUP1 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC27.53■■■□□ 2
BLOC1S4Q9NUP1 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC27.52■■■□□ 2
BLOC1S4Q9NUP1 ZNF276-202ENST00000443381 2267 ntAPPRIS P1 TSL 1 (best) BASIC27.52■■■□□ 2
BLOC1S4Q9NUP1 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC27.52■■■□□ 2
BLOC1S4Q9NUP1 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC27.52■■■□□ 2
Retrieved 100 of 98,524 protein–RNA pairs in 10.6 ms