Protein–RNA interactions for Protein: Q96MR9

ZNF560, Zinc finger protein 560, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF560Q96MR9 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC26.61■■□□□ 1.85
ZNF560Q96MR9 ZNF639-209ENST00000496856 2033 ntAPPRIS P1 TSL 1 (best) BASIC26.61■■□□□ 1.85
ZNF560Q96MR9 REST-210ENST00000638187 1334 ntTSL 5 BASIC26.61■■□□□ 1.85
ZNF560Q96MR9 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC26.61■■□□□ 1.85
ZNF560Q96MR9 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC26.6■■□□□ 1.85
ZNF560Q96MR9 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC26.6■■□□□ 1.85
ZNF560Q96MR9 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC26.6■■□□□ 1.85
ZNF560Q96MR9 FCGRT-217ENST00000599988 660 ntTSL 5 BASIC26.6■■□□□ 1.85
ZNF560Q96MR9 HDHD5-202ENST00000336737 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC26.6■■□□□ 1.85
ZNF560Q96MR9 MFSD12-201ENST00000355415 2124 ntAPPRIS P3 TSL 1 (best) BASIC26.6■■□□□ 1.85
ZNF560Q96MR9 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC26.59■■□□□ 1.85
ZNF560Q96MR9 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC26.59■■□□□ 1.85
ZNF560Q96MR9 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC26.59■■□□□ 1.85
ZNF560Q96MR9 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC26.59■■□□□ 1.85
ZNF560Q96MR9 JAG2-201ENST00000331782 5835 ntAPPRIS P1 TSL 1 (best) BASIC26.59■■□□□ 1.85
ZNF560Q96MR9 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC26.58■■□□□ 1.85
ZNF560Q96MR9 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.85
ZNF560Q96MR9 NPW-202ENST00000566435 991 ntAPPRIS ALT2 TSL 1 (best) BASIC26.58■■□□□ 1.85
ZNF560Q96MR9 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC26.58■■□□□ 1.85
ZNF560Q96MR9 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC26.57■■□□□ 1.84
ZNF560Q96MR9 TCF24-201ENST00000563496 2450 ntAPPRIS P1 TSL 5 BASIC26.57■■□□□ 1.84
ZNF560Q96MR9 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC26.57■■□□□ 1.84
ZNF560Q96MR9 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC26.57■■□□□ 1.84
ZNF560Q96MR9 ANKRD65-205ENST00000537107 2190 ntAPPRIS P1 TSL 5 BASIC26.57■■□□□ 1.84
ZNF560Q96MR9 C14orf80-205ENST00000392523 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC26.56■■□□□ 1.84
ZNF560Q96MR9 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC26.56■■□□□ 1.84
ZNF560Q96MR9 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
ZNF560Q96MR9 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC26.55■■□□□ 1.84
ZNF560Q96MR9 FOXO6-202ENST00000641094 1476 ntAPPRIS P1 BASIC26.55■■□□□ 1.84
ZNF560Q96MR9 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC26.55■■□□□ 1.84
ZNF560Q96MR9 ENDOG-201ENST00000372642 1172 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
ZNF560Q96MR9 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC26.55■■□□□ 1.84
ZNF560Q96MR9 PQLC3-201ENST00000295083 1830 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
ZNF560Q96MR9 CCND3-205ENST00000415497 1843 ntTSL 2 BASIC26.55■■□□□ 1.84
ZNF560Q96MR9 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC26.55■■□□□ 1.84
ZNF560Q96MR9 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC26.55■■□□□ 1.84
ZNF560Q96MR9 HYAL2-202ENST00000395139 2136 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
ZNF560Q96MR9 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC26.54■■□□□ 1.84
ZNF560Q96MR9 LOR-201ENST00000368742 1230 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
ZNF560Q96MR9 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC26.54■■□□□ 1.84
ZNF560Q96MR9 SMPD5-203ENST00000639008 1464 ntBASIC26.54■■□□□ 1.84
ZNF560Q96MR9 ACTG1-210ENST00000575842 2256 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
ZNF560Q96MR9 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC26.54■■□□□ 1.84
ZNF560Q96MR9 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC26.53■■□□□ 1.84
ZNF560Q96MR9 AC025884.2-201ENST00000553429 711 ntBASIC26.53■■□□□ 1.84
ZNF560Q96MR9 MEN1-204ENST00000377313 1871 ntAPPRIS P3 TSL 2 BASIC26.53■■□□□ 1.84
ZNF560Q96MR9 VIPR2-204ENST00000421760 717 ntTSL 3 BASIC26.52■■□□□ 1.84
ZNF560Q96MR9 OPRD1-202ENST00000621425 1217 ntTSL 1 (best) BASIC26.52■■□□□ 1.84
ZNF560Q96MR9 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC26.51■■□□□ 1.83
ZNF560Q96MR9 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC26.51■■□□□ 1.83
ZNF560Q96MR9 AC007029.1-201ENST00000604183 313 ntBASIC26.51■■□□□ 1.83
ZNF560Q96MR9 AL449106.1-201ENST00000608517 1980 ntBASIC26.51■■□□□ 1.83
ZNF560Q96MR9 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
ZNF560Q96MR9 PXDC1-202ENST00000380283 2190 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
ZNF560Q96MR9 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC26.49■■□□□ 1.83
ZNF560Q96MR9 SHF-208ENST00000560734 1731 ntTSL 3 BASIC26.49■■□□□ 1.83
ZNF560Q96MR9 BTBD19-201ENST00000409335 1214 ntTSL 5 BASIC26.49■■□□□ 1.83
ZNF560Q96MR9 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC26.49■■□□□ 1.83
ZNF560Q96MR9 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
ZNF560Q96MR9 HYI-213ENST00000583037 1322 ntTSL 5 BASIC26.48■■□□□ 1.83
ZNF560Q96MR9 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC26.48■■□□□ 1.83
ZNF560Q96MR9 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC26.48■■□□□ 1.83
ZNF560Q96MR9 AL359504.2-201ENST00000605506 1601 ntBASIC26.47■■□□□ 1.83
ZNF560Q96MR9 GGA1-204ENST00000381756 2107 ntTSL 1 (best) BASIC26.47■■□□□ 1.83
ZNF560Q96MR9 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC26.47■■□□□ 1.83
ZNF560Q96MR9 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC26.47■■□□□ 1.83
ZNF560Q96MR9 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC26.46■■□□□ 1.83
ZNF560Q96MR9 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC26.46■■□□□ 1.83
ZNF560Q96MR9 PFN2-211ENST00000489155 636 ntTSL 4 BASIC26.45■■□□□ 1.82
ZNF560Q96MR9 MIR3960-201ENST00000583311 91 ntBASIC26.44■■□□□ 1.82
ZNF560Q96MR9 NTF6A-201ENST00000591175 560 ntBASIC26.44■■□□□ 1.82
ZNF560Q96MR9 CAPNS1-204ENST00000587718 1558 ntAPPRIS ALT2 TSL 1 (best) BASIC26.43■■□□□ 1.82
ZNF560Q96MR9 MAPK3-203ENST00000395199 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC26.43■■□□□ 1.82
ZNF560Q96MR9 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC26.43■■□□□ 1.82
ZNF560Q96MR9 SAP25-204ENST00000622764 1031 ntAPPRIS ALT2 TSL 5 BASIC26.43■■□□□ 1.82
ZNF560Q96MR9 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC26.43■■□□□ 1.82
ZNF560Q96MR9 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC26.43■■□□□ 1.82
ZNF560Q96MR9 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC26.42■■□□□ 1.82
ZNF560Q96MR9 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC26.42■■□□□ 1.82
ZNF560Q96MR9 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC26.42■■□□□ 1.82
ZNF560Q96MR9 RSPH1-201ENST00000291536 1430 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
ZNF560Q96MR9 PKIG-205ENST00000372891 1443 ntAPPRIS P1 TSL 2 BASIC26.41■■□□□ 1.82
ZNF560Q96MR9 RP9P-202ENST00000450133 1212 ntBASIC26.41■■□□□ 1.82
ZNF560Q96MR9 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC26.41■■□□□ 1.82
ZNF560Q96MR9 VSIG8-201ENST00000368100 1818 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
ZNF560Q96MR9 WBP1-202ENST00000393972 1325 ntTSL 2 BASIC26.4■■□□□ 1.82
ZNF560Q96MR9 RTN2-202ENST00000344680 2063 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.82
ZNF560Q96MR9 TIGD3-201ENST00000309880 2012 ntAPPRIS P1 TSL 2 BASIC26.4■■□□□ 1.82
ZNF560Q96MR9 GFER-205ENST00000569451 517 ntTSL 5 BASIC26.4■■□□□ 1.82
ZNF560Q96MR9 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC26.4■■□□□ 1.82
ZNF560Q96MR9 PLEKHF1-201ENST00000436066 2084 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.82
ZNF560Q96MR9 CLEC11A-201ENST00000250340 1419 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.82
ZNF560Q96MR9 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.82
ZNF560Q96MR9 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC26.39■■□□□ 1.82
ZNF560Q96MR9 U85056.1-201ENST00000616429 682 ntBASIC26.39■■□□□ 1.82
ZNF560Q96MR9 C16orf95-206ENST00000618367 974 ntAPPRIS ALT2 TSL 2 BASIC26.39■■□□□ 1.82
ZNF560Q96MR9 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC26.39■■□□□ 1.81
ZNF560Q96MR9 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC26.38■■□□□ 1.81
ZNF560Q96MR9 ZMYND19-201ENST00000298585 1375 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
ZNF560Q96MR9 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC26.38■■□□□ 1.81
Retrieved 100 of 98,524 protein–RNA pairs in 33.2 ms