Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC28.98■■■□□ 2.23
HMGCS2P54868 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC28.98■■■□□ 2.23
HMGCS2P54868 MIR3960-201ENST00000583311 91 ntBASIC28.98■■■□□ 2.23
HMGCS2P54868 AL451085.2-201ENST00000605085 799 ntBASIC28.98■■■□□ 2.23
HMGCS2P54868 BHLHE23-202ENST00000612929 1109 ntBASIC28.98■■■□□ 2.23
HMGCS2P54868 TSPY4-202ENST00000426950 1179 ntAPPRIS P5 TSL 5 BASIC28.97■■■□□ 2.23
HMGCS2P54868 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC28.97■■■□□ 2.23
HMGCS2P54868 AC116025.2-201ENST00000576632 443 ntTSL 3 BASIC28.97■■■□□ 2.23
HMGCS2P54868 AL035685.1-201ENST00000636663 812 ntBASIC28.97■■■□□ 2.23
HMGCS2P54868 CHST14-202ENST00000559991 1968 ntTSL 5 BASIC28.96■■■□□ 2.23
HMGCS2P54868 AC010980.1-201ENST00000587192 1142 ntBASIC28.96■■■□□ 2.23
HMGCS2P54868 SIRT3-201ENST00000382743 2543 ntAPPRIS P2 TSL 1 (best) BASIC28.96■■■□□ 2.23
HMGCS2P54868 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC28.96■■■□□ 2.23
HMGCS2P54868 SOCS2-202ENST00000536696 1065 ntAPPRIS P1 TSL 2 BASIC28.95■■■□□ 2.22
HMGCS2P54868 AC008105.2-203ENST00000591361 550 ntTSL 4 BASIC28.95■■■□□ 2.22
HMGCS2P54868 C12orf75-201ENST00000443585 1366 ntAPPRIS P1 TSL 2 BASIC28.95■■■□□ 2.22
HMGCS2P54868 DCBLD1-201ENST00000296955 1979 ntAPPRIS P2 TSL 1 (best) BASIC28.95■■■□□ 2.22
HMGCS2P54868 TBCC-201ENST00000372876 1616 ntAPPRIS P1 BASIC28.94■■■□□ 2.22
HMGCS2P54868 TNK2-201ENST00000333602 5270 ntAPPRIS P1 TSL 1 (best) BASIC28.94■■■□□ 2.22
HMGCS2P54868 PQLC3-201ENST00000295083 1830 ntAPPRIS P1 TSL 1 (best) BASIC28.94■■■□□ 2.22
HMGCS2P54868 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC28.94■■■□□ 2.22
HMGCS2P54868 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC28.94■■■□□ 2.22
HMGCS2P54868 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC28.93■■■□□ 2.22
HMGCS2P54868 TPRA1-202ENST00000355552 1933 ntAPPRIS P1 TSL 1 (best) BASIC28.93■■■□□ 2.22
HMGCS2P54868 AC016910.1-201ENST00000422799 1046 ntTSL 1 (best) BASIC28.93■■■□□ 2.22
HMGCS2P54868 FAHD1-204ENST00000615972 757 ntTSL 5 BASIC28.93■■■□□ 2.22
HMGCS2P54868 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC28.93■■■□□ 2.22
HMGCS2P54868 TXNRD2-204ENST00000400521 2115 ntAPPRIS P2 TSL 1 (best) BASIC28.93■■■□□ 2.22
HMGCS2P54868 AC138647.1-201ENST00000427937 648 ntAPPRIS P1 TSL 5 BASIC28.92■■■□□ 2.22
HMGCS2P54868 EMC10-202ENST00000376918 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC28.92■■■□□ 2.22
HMGCS2P54868 GSX1-201ENST00000302945 1663 ntAPPRIS P1 TSL 1 (best) BASIC28.92■■■□□ 2.22
HMGCS2P54868 DERA-201ENST00000428559 1705 ntAPPRIS P1 TSL 1 (best) BASIC28.91■■■□□ 2.22
HMGCS2P54868 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC28.91■■■□□ 2.22
HMGCS2P54868 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC28.91■■■□□ 2.22
HMGCS2P54868 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC28.91■■■□□ 2.22
HMGCS2P54868 KRT8P33-201ENST00000508125 1423 ntBASIC28.91■■■□□ 2.22
HMGCS2P54868 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC28.91■■■□□ 2.22
HMGCS2P54868 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC28.91■■■□□ 2.22
HMGCS2P54868 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC28.91■■■□□ 2.22
HMGCS2P54868 SLC15A4-201ENST00000266771 2779 ntAPPRIS P1 TSL 1 (best) BASIC28.9■■■□□ 2.22
HMGCS2P54868 CGREF1-203ENST00000402394 1906 ntAPPRIS P2 TSL 2 BASIC28.9■■■□□ 2.22
HMGCS2P54868 MIR6765-201ENST00000614092 87 ntBASIC28.9■■■□□ 2.22
HMGCS2P54868 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC28.9■■■□□ 2.22
HMGCS2P54868 RUNDC3A-206ENST00000590941 1675 ntTSL 1 (best) BASIC28.89■■■□□ 2.22
HMGCS2P54868 ABCB10P1-201ENST00000614297 2181 ntBASIC28.89■■■□□ 2.22
HMGCS2P54868 GNAS-207ENST00000354359 1975 ntTSL 1 (best) BASIC28.88■■■□□ 2.21
HMGCS2P54868 GNAS-210ENST00000371085 1972 ntTSL 1 (best) BASIC28.88■■■□□ 2.21
HMGCS2P54868 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC28.88■■■□□ 2.21
HMGCS2P54868 PHOX2A-201ENST00000298231 1699 ntAPPRIS P1 TSL 1 (best) BASIC28.88■■■□□ 2.21
HMGCS2P54868 AC139795.1-202ENST00000500444 432 ntBASIC28.87■■■□□ 2.21
HMGCS2P54868 FAM159A-204ENST00000517870 748 ntAPPRIS P1 TSL 1 (best) BASIC28.87■■■□□ 2.21
HMGCS2P54868 TPRA1-209ENST00000489960 1903 ntAPPRIS P1 TSL 5 BASIC28.86■■■□□ 2.21
HMGCS2P54868 IGFBP7-201ENST00000295666 1427 ntAPPRIS P3 TSL 1 (best) BASIC28.86■■■□□ 2.21
HMGCS2P54868 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC28.86■■■□□ 2.21
HMGCS2P54868 BEX3-202ENST00000372634 753 ntTSL 2 BASIC28.86■■■□□ 2.21
HMGCS2P54868 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC28.86■■■□□ 2.21
HMGCS2P54868 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC28.86■■■□□ 2.21
HMGCS2P54868 AC074183.2-201ENST00000623112 922 ntBASIC28.86■■■□□ 2.21
HMGCS2P54868 AL359504.2-201ENST00000605506 1601 ntBASIC28.86■■■□□ 2.21
HMGCS2P54868 RIPPLY2-202ENST00000369689 664 ntAPPRIS P2 TSL 1 (best) BASIC28.85■■■□□ 2.21
HMGCS2P54868 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC28.85■■■□□ 2.21
HMGCS2P54868 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC28.85■■■□□ 2.21
HMGCS2P54868 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC28.85■■■□□ 2.21
HMGCS2P54868 ZFAND2B-201ENST00000289528 1314 ntAPPRIS P1 TSL 1 (best) BASIC28.85■■■□□ 2.21
HMGCS2P54868 IFNGR2-201ENST00000290219 2221 ntAPPRIS P3 TSL 1 (best) BASIC28.85■■■□□ 2.21
HMGCS2P54868 RHOBTB3-206ENST00000506817 1432 ntTSL 2 BASIC28.85■■■□□ 2.21
HMGCS2P54868 AGAP3-216ENST00000479901 1881 ntTSL 5 BASIC28.85■■■□□ 2.21
HMGCS2P54868 SEPT3-203ENST00000396426 2586 ntAPPRIS P4 TSL 1 (best) BASIC28.84■■■□□ 2.21
HMGCS2P54868 NTHL1-201ENST00000219066 1067 ntAPPRIS P1 TSL 1 (best) BASIC28.84■■■□□ 2.21
HMGCS2P54868 PLA2G10-201ENST00000438167 1000 ntAPPRIS P1 TSL 1 (best) BASIC28.84■■■□□ 2.21
HMGCS2P54868 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC28.84■■■□□ 2.21
HMGCS2P54868 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC28.84■■■□□ 2.21
HMGCS2P54868 CUL4A-202ENST00000375440 2364 ntAPPRIS P1 TSL 1 (best) BASIC28.83■■■□□ 2.21
HMGCS2P54868 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC28.83■■■□□ 2.21
HMGCS2P54868 NRXN1-228ENST00000628364 2444 ntTSL 5 BASIC28.83■■■□□ 2.21
HMGCS2P54868 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC28.83■■■□□ 2.21
HMGCS2P54868 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC28.83■■■□□ 2.21
HMGCS2P54868 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC28.83■■■□□ 2.21
HMGCS2P54868 TRIR-205ENST00000592273 783 ntTSL 3 BASIC28.83■■■□□ 2.21
HMGCS2P54868 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC28.83■■■□□ 2.21
HMGCS2P54868 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC28.83■■■□□ 2.21
HMGCS2P54868 SPATA5L1-208ENST00000638607 1863 ntTSL 2 BASIC28.83■■■□□ 2.2
HMGCS2P54868 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC28.82■■■□□ 2.2
HMGCS2P54868 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC28.82■■■□□ 2.2
HMGCS2P54868 AC018755.3-202ENST00000596210 929 ntBASIC28.82■■■□□ 2.2
HMGCS2P54868 TNFSF12-201ENST00000293825 1553 ntAPPRIS P1 TSL 1 (best) BASIC28.82■■■□□ 2.2
HMGCS2P54868 ARMC10-211ENST00000541300 2266 ntTSL 1 (best) BASIC28.82■■■□□ 2.2
HMGCS2P54868 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC28.81■■■□□ 2.2
HMGCS2P54868 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC28.81■■■□□ 2.2
HMGCS2P54868 PVT1_1.1-201ENST00000615125 194 ntBASIC28.81■■■□□ 2.2
HMGCS2P54868 ST7-208ENST00000393451 2110 ntAPPRIS P1 TSL 1 (best) BASIC28.81■■■□□ 2.2
HMGCS2P54868 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC28.81■■■□□ 2.2
HMGCS2P54868 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC28.8■■■□□ 2.2
HMGCS2P54868 KCTD17-202ENST00000403888 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC28.8■■■□□ 2.2
HMGCS2P54868 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC28.8■■■□□ 2.2
HMGCS2P54868 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC28.8■■■□□ 2.2
HMGCS2P54868 RASGEF1B-211ENST00000514050 537 ntTSL 2 BASIC28.8■■■□□ 2.2
HMGCS2P54868 MTCH1-202ENST00000373627 2057 ntAPPRIS P1 TSL 1 (best) BASIC28.79■■■□□ 2.2
HMGCS2P54868 FKBP1B-202ENST00000380991 1010 ntTSL 1 (best) BASIC28.79■■■□□ 2.2
HMGCS2P54868 AC103834.1-201ENST00000520383 144 ntBASIC28.79■■■□□ 2.2
Retrieved 100 of 98,524 protein–RNA pairs in 18.7 ms