Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 AC148477.6-201ENST00000623746 465 ntBASIC23.93■■□□□ 1.42
HNF4AP41235 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC23.93■■□□□ 1.42
HNF4AP41235 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC23.93■■□□□ 1.42
HNF4AP41235 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
HNF4AP41235 PWWP2B-201ENST00000305233 2651 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
HNF4AP41235 AC010907.1-201ENST00000441632 807 ntTSL 3 BASIC23.92■■□□□ 1.42
HNF4AP41235 ARPC2-202ENST00000315717 1505 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
HNF4AP41235 MIR639-201ENST00000384974 98 ntBASIC23.91■■□□□ 1.42
HNF4AP41235 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
HNF4AP41235 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC23.91■■□□□ 1.42
HNF4AP41235 SOWAHD-201ENST00000343905 1552 ntAPPRIS P1 BASIC23.91■■□□□ 1.42
HNF4AP41235 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC23.9■■□□□ 1.42
HNF4AP41235 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC23.9■■□□□ 1.42
HNF4AP41235 LINC01896-206ENST00000575722 1256 ntTSL 2 BASIC23.9■■□□□ 1.42
HNF4AP41235 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
HNF4AP41235 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC23.9■■□□□ 1.42
HNF4AP41235 CREM-210ENST00000374721 2020 ntTSL 5 BASIC23.89■■□□□ 1.42
HNF4AP41235 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC23.89■■□□□ 1.42
HNF4AP41235 AC073111.5-206ENST00000642087 859 ntAPPRIS P1 BASIC23.89■■□□□ 1.41
HNF4AP41235 SLC25A23-203ENST00000334510 1424 ntTSL 1 (best) BASIC23.89■■□□□ 1.41
HNF4AP41235 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC23.89■■□□□ 1.41
HNF4AP41235 MIR219A2-201ENST00000608502 1504 ntBASIC23.89■■□□□ 1.41
HNF4AP41235 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.41
HNF4AP41235 MRPL4-201ENST00000253099 1455 ntAPPRIS P2 TSL 1 (best) BASIC23.88■■□□□ 1.41
HNF4AP41235 TXNRD2-205ENST00000400525 1874 ntTSL 5 BASIC23.88■■□□□ 1.41
HNF4AP41235 CHST11-203ENST00000547956 936 ntTSL 2 BASIC23.88■■□□□ 1.41
HNF4AP41235 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC23.88■■□□□ 1.41
HNF4AP41235 COPZ2-210ENST00000621465 895 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
HNF4AP41235 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC23.88■■□□□ 1.41
HNF4AP41235 DHRS13-203ENST00000426464 1569 ntTSL 2 BASIC23.87■■□□□ 1.41
HNF4AP41235 LSM6-202ENST00000502781 1352 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
HNF4AP41235 AP004609.3-201ENST00000610705 1884 ntBASIC23.87■■□□□ 1.41
HNF4AP41235 POU3F3-201ENST00000361360 3064 ntAPPRIS P1 BASIC23.87■■□□□ 1.41
HNF4AP41235 CRELD2-203ENST00000404488 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC23.86■■□□□ 1.41
HNF4AP41235 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
HNF4AP41235 CIB2-202ENST00000539011 1511 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
HNF4AP41235 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC23.86■■□□□ 1.41
HNF4AP41235 S1PR4-201ENST00000246115 1565 ntAPPRIS P1 BASIC23.86■■□□□ 1.41
HNF4AP41235 ZNF276-202ENST00000443381 2267 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
HNF4AP41235 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
HNF4AP41235 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
HNF4AP41235 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC23.84■■□□□ 1.41
HNF4AP41235 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
HNF4AP41235 CDC34-201ENST00000215574 1471 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
HNF4AP41235 STARD10-220ENST00000545082 1085 ntTSL 3 BASIC23.84■■□□□ 1.41
HNF4AP41235 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
HNF4AP41235 SLC35A2-207ENST00000445167 1739 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
HNF4AP41235 AC142472.1-201ENST00000612013 1741 ntBASIC23.84■■□□□ 1.41
HNF4AP41235 EMC10-206ENST00000598585 1610 ntAPPRIS ALT2 TSL 5 BASIC23.84■■□□□ 1.41
HNF4AP41235 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC23.84■■□□□ 1.41
HNF4AP41235 HECA-201ENST00000367658 5614 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
HNF4AP41235 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
HNF4AP41235 PDF-201ENST00000288022 1158 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
HNF4AP41235 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC23.83■■□□□ 1.41
HNF4AP41235 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
HNF4AP41235 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.4
HNF4AP41235 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC23.83■■□□□ 1.4
HNF4AP41235 OSBP-201ENST00000263847 5083 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
HNF4AP41235 PLEKHF2-202ENST00000519516 1144 ntAPPRIS P1 TSL 3 BASIC23.82■■□□□ 1.4
HNF4AP41235 C16orf74-204ENST00000602719 1002 ntAPPRIS ALT2 TSL 3 BASIC23.82■■□□□ 1.4
HNF4AP41235 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC23.82■■□□□ 1.4
HNF4AP41235 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
HNF4AP41235 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC23.81■■□□□ 1.4
HNF4AP41235 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC23.81■■□□□ 1.4
HNF4AP41235 BOK-AS1-201ENST00000434306 643 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
HNF4AP41235 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC23.81■■□□□ 1.4
HNF4AP41235 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC23.8■■□□□ 1.4
HNF4AP41235 C12orf75-201ENST00000443585 1366 ntAPPRIS P1 TSL 2 BASIC23.8■■□□□ 1.4
HNF4AP41235 EPB41L4A-AS2-201ENST00000623705 1396 ntBASIC23.8■■□□□ 1.4
HNF4AP41235 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC23.8■■□□□ 1.4
HNF4AP41235 AQP1-203ENST00000409899 1009 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
HNF4AP41235 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC23.8■■□□□ 1.4
HNF4AP41235 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC23.8■■□□□ 1.4
HNF4AP41235 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC23.79■■□□□ 1.4
HNF4AP41235 DNAJB2-202ENST00000392086 1946 ntAPPRIS P1 TSL 2 BASIC23.79■■□□□ 1.4
HNF4AP41235 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
HNF4AP41235 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC23.79■■□□□ 1.4
HNF4AP41235 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
HNF4AP41235 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC23.79■■□□□ 1.4
HNF4AP41235 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC23.78■■□□□ 1.4
HNF4AP41235 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC23.78■■□□□ 1.4
HNF4AP41235 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
HNF4AP41235 ARMC10-205ENST00000428183 2445 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
HNF4AP41235 CMPK2-203ENST00000458098 1224 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
HNF4AP41235 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC23.77■■□□□ 1.4
HNF4AP41235 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC23.77■■□□□ 1.4
HNF4AP41235 GAL3ST3-203ENST00000527878 1599 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
HNF4AP41235 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC23.76■■□□□ 1.39
HNF4AP41235 FAM168B-201ENST00000389915 944 ntAPPRIS P1 TSL 3 BASIC23.76■■□□□ 1.39
HNF4AP41235 KIF13A-207ENST00000502704 1330 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
HNF4AP41235 AC078883.1-202ENST00000450443 1397 ntTSL 3 BASIC23.76■■□□□ 1.39
HNF4AP41235 ATOH7-201ENST00000373673 1480 ntAPPRIS P1 BASIC23.75■■□□□ 1.39
HNF4AP41235 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC23.75■■□□□ 1.39
HNF4AP41235 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
HNF4AP41235 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
HNF4AP41235 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC23.74■■□□□ 1.39
HNF4AP41235 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
HNF4AP41235 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
HNF4AP41235 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
HNF4AP41235 MIR4449-201ENST00000578365 66 ntBASIC23.74■■□□□ 1.39
Retrieved 100 of 98,524 protein–RNA pairs in 39.1 ms