Protein–RNA interactions for Protein: A0A0B4J280

TRAV40, T-cell receptor alpha variable 40 (Fragment), humanhuman

Predictions only

Length 105 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV40A0A0B4J280 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
TRAV40A0A0B4J280 ADAP1-201ENST00000265846 2363 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
TRAV40A0A0B4J280 ENHO-201ENST00000399775 1082 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
TRAV40A0A0B4J280 UBE2D2-205ENST00000505548 1113 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
TRAV40A0A0B4J280 FAM222B-205ENST00000577682 549 ntTSL 4 BASIC20.19■□□□□ 0.82
TRAV40A0A0B4J280 GNAS-AS1_1.1-201ENST00000621898 103 ntBASIC20.19■□□□□ 0.82
TRAV40A0A0B4J280 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
TRAV40A0A0B4J280 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC20.18■□□□□ 0.82
TRAV40A0A0B4J280 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC20.18■□□□□ 0.82
TRAV40A0A0B4J280 AC009831.1-201ENST00000580420 1582 ntBASIC20.18■□□□□ 0.82
TRAV40A0A0B4J280 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
TRAV40A0A0B4J280 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
TRAV40A0A0B4J280 IFI30-201ENST00000407280 1134 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
TRAV40A0A0B4J280 PSMG4-206ENST00000438998 838 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
TRAV40A0A0B4J280 AC025884.2-201ENST00000553429 711 ntBASIC20.18■□□□□ 0.82
TRAV40A0A0B4J280 AC133552.2-201ENST00000619106 1032 ntBASIC20.18■□□□□ 0.82
TRAV40A0A0B4J280 BCL3-201ENST00000164227 2038 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
TRAV40A0A0B4J280 ZDHHC23-206ENST00000498275 2055 ntAPPRIS ALT2 TSL 2 BASIC20.18■□□□□ 0.82
TRAV40A0A0B4J280 MATK-201ENST00000310132 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
TRAV40A0A0B4J280 PSMG3-202ENST00000288607 1391 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
TRAV40A0A0B4J280 SECTM1-201ENST00000269389 2235 ntAPPRIS P2 TSL 1 (best) BASIC20.18■□□□□ 0.82
TRAV40A0A0B4J280 CLEC11A-201ENST00000250340 1419 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
TRAV40A0A0B4J280 TPRA1-209ENST00000489960 1903 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
TRAV40A0A0B4J280 FBXO45-201ENST00000311630 5899 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
TRAV40A0A0B4J280 ARHGAP22-202ENST00000374170 2107 ntTSL 5 BASIC20.17■□□□□ 0.82
TRAV40A0A0B4J280 TSPY13P-201ENST00000338964 914 ntBASIC20.17■□□□□ 0.82
TRAV40A0A0B4J280 C20orf24-201ENST00000342422 896 ntTSL 2 BASIC20.17■□□□□ 0.82
TRAV40A0A0B4J280 C20orf24-202ENST00000344795 1114 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
TRAV40A0A0B4J280 PTPA-210ENST00000414510 1153 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
TRAV40A0A0B4J280 AC004987.1-201ENST00000428627 508 ntBASIC20.17■□□□□ 0.82
TRAV40A0A0B4J280 HES4-204ENST00000484667 667 ntTSL 3 BASIC20.17■□□□□ 0.82
TRAV40A0A0B4J280 C12orf75-201ENST00000443585 1366 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.82
TRAV40A0A0B4J280 DRD5P2-201ENST00000421395 2012 ntBASIC20.17■□□□□ 0.82
TRAV40A0A0B4J280 ESRRA-201ENST00000000442 2215 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
TRAV40A0A0B4J280 TYMP-201ENST00000252029 1630 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
TRAV40A0A0B4J280 ATP5G2P3-201ENST00000429083 425 ntBASIC20.16■□□□□ 0.82
TRAV40A0A0B4J280 RP9P-202ENST00000450133 1212 ntBASIC20.16■□□□□ 0.82
TRAV40A0A0B4J280 PSMG4-207ENST00000451246 824 ntTSL 3 BASIC20.16■□□□□ 0.82
TRAV40A0A0B4J280 AL592293.1-201ENST00000502889 1188 ntBASIC20.16■□□□□ 0.82
TRAV40A0A0B4J280 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
TRAV40A0A0B4J280 TPI1-201ENST00000229270 1763 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
TRAV40A0A0B4J280 CCDC61-204ENST00000595358 1817 ntAPPRIS P2 TSL 5 BASIC20.16■□□□□ 0.82
TRAV40A0A0B4J280 GFER-205ENST00000569451 517 ntTSL 5 BASIC20.15■□□□□ 0.82
TRAV40A0A0B4J280 RAB4B-203ENST00000594800 1173 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
TRAV40A0A0B4J280 FBXL8-206ENST00000519917 1460 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
TRAV40A0A0B4J280 CDH23-208ENST00000461841 2000 ntTSL 5 BASIC20.15■□□□□ 0.82
TRAV40A0A0B4J280 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC20.15■□□□□ 0.82
TRAV40A0A0B4J280 WHAMMP3-201ENST00000611636 1609 ntBASIC20.14■□□□□ 0.81
TRAV40A0A0B4J280 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
TRAV40A0A0B4J280 PKIG-205ENST00000372891 1443 ntAPPRIS P1 TSL 2 BASIC20.14■□□□□ 0.81
TRAV40A0A0B4J280 LYPD6B-204ENST00000409876 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
TRAV40A0A0B4J280 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC20.14■□□□□ 0.81
TRAV40A0A0B4J280 AC093536.1-201ENST00000569153 554 ntBASIC20.14■□□□□ 0.81
TRAV40A0A0B4J280 DPF1-202ENST00000412732 2303 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
TRAV40A0A0B4J280 PQLC3-201ENST00000295083 1830 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
TRAV40A0A0B4J280 DEXI-202ENST00000469379 1393 ntAPPRIS P1 TSL 2 BASIC20.13■□□□□ 0.81
TRAV40A0A0B4J280 HOXD13-201ENST00000392539 2240 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
TRAV40A0A0B4J280 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC20.13■□□□□ 0.81
TRAV40A0A0B4J280 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
TRAV40A0A0B4J280 MIR3960-201ENST00000583311 91 ntBASIC20.13■□□□□ 0.81
TRAV40A0A0B4J280 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC20.13■□□□□ 0.81
TRAV40A0A0B4J280 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC20.12■□□□□ 0.81
TRAV40A0A0B4J280 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC20.12■□□□□ 0.81
TRAV40A0A0B4J280 PPP1R14A-201ENST00000301242 777 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
TRAV40A0A0B4J280 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC20.12■□□□□ 0.81
TRAV40A0A0B4J280 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
TRAV40A0A0B4J280 AC026202.3-201ENST00000600805 1127 ntBASIC20.12■□□□□ 0.81
TRAV40A0A0B4J280 AC129492.7-201ENST00000622992 756 ntBASIC20.12■□□□□ 0.81
TRAV40A0A0B4J280 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC20.12■□□□□ 0.81
TRAV40A0A0B4J280 THAP11-201ENST00000303596 2114 ntAPPRIS P1 BASIC20.12■□□□□ 0.81
TRAV40A0A0B4J280 LYPD6B-203ENST00000409642 1577 ntAPPRIS P3 TSL 1 (best) BASIC20.12■□□□□ 0.81
TRAV40A0A0B4J280 MSRB1-206ENST00000622125 1363 ntAPPRIS ALT1 TSL 5 BASIC20.11■□□□□ 0.81
TRAV40A0A0B4J280 WBP1-201ENST00000233615 1294 ntAPPRIS P2 TSL 1 (best) BASIC20.11■□□□□ 0.81
TRAV40A0A0B4J280 SDF2L1-201ENST00000248958 865 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
TRAV40A0A0B4J280 GUK1-208ENST00000366728 842 ntTSL 2 BASIC20.11■□□□□ 0.81
TRAV40A0A0B4J280 UBE2I-213ENST00000566587 1098 ntAPPRIS P1 TSL 2 BASIC20.11■□□□□ 0.81
TRAV40A0A0B4J280 HOMER3-207ENST00000594794 903 ntTSL 5 BASIC20.11■□□□□ 0.81
TRAV40A0A0B4J280 ANGPTL6-203ENST00000589181 1579 ntTSL 5 BASIC20.11■□□□□ 0.81
TRAV40A0A0B4J280 RRAGC-201ENST00000373001 2732 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
TRAV40A0A0B4J280 EIF5A-211ENST00000576930 1439 ntAPPRIS P1 TSL 5 BASIC20.1■□□□□ 0.81
TRAV40A0A0B4J280 MEX3D-201ENST00000402693 2850 ntAPPRIS P2 TSL 1 (best) BASIC20.1■□□□□ 0.81
TRAV40A0A0B4J280 PFN2-211ENST00000489155 636 ntTSL 4 BASIC20.1■□□□□ 0.81
TRAV40A0A0B4J280 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC20.1■□□□□ 0.81
TRAV40A0A0B4J280 WSB2-201ENST00000315436 2646 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
TRAV40A0A0B4J280 TMEM268-201ENST00000288502 2314 ntAPPRIS P3 TSL 1 (best) BASIC20.1■□□□□ 0.81
TRAV40A0A0B4J280 DLG3-203ENST00000374360 5905 ntAPPRIS P2 TSL 1 (best) BASIC20.1■□□□□ 0.81
TRAV40A0A0B4J280 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC20.09■□□□□ 0.81
TRAV40A0A0B4J280 AL121899.1-202ENST00000411839 536 ntTSL 5 BASIC20.09■□□□□ 0.81
TRAV40A0A0B4J280 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
TRAV40A0A0B4J280 KLF16-204ENST00000617223 1133 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
TRAV40A0A0B4J280 AL359504.2-201ENST00000605506 1601 ntBASIC20.09■□□□□ 0.81
TRAV40A0A0B4J280 ST6GALNAC6-203ENST00000373142 2448 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
TRAV40A0A0B4J280 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
TRAV40A0A0B4J280 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
TRAV40A0A0B4J280 MPC1-201ENST00000341756 976 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
TRAV40A0A0B4J280 MPC1-206ENST00000621630 977 ntAPPRIS ALT1 TSL 5 BASIC20.08■□□□□ 0.81
TRAV40A0A0B4J280 MPC1-207ENST00000621685 1192 ntTSL 5 BASIC20.08■□□□□ 0.81
TRAV40A0A0B4J280 EMID1-202ENST00000404755 2049 ntTSL 5 BASIC20.08■□□□□ 0.8
TRAV40A0A0B4J280 ABHD17C-202ENST00000558464 1976 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
TRAV40A0A0B4J280 EXOC3-209ENST00000512944 2825 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 11.6 ms