Protein–RNA interactions for Protein: P53999

SUB1, Activated RNA polymerase II transcriptional coactivator p15, humanhuman

Known RBP eCLIP

Length 127 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SUB1P53999 RPS15A-203ENST00000563390 525 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.681e-7■□□□□ 9
SUB1P53999 RPS15A-207ENST00000569365 481 ntTSL 33.13□□□□□ -1.911e-7■□□□□ 9
SUB1P53999 RPS15A-210ENST00000574723 418 ntTSL 32.71□□□□□ -1.981e-7■□□□□ 9
SUB1P53999 MARCH6-208ENST00000510792 1963 ntTSL 2 BASIC8.82□□□□□ -17e-7■□□□□ 9
SUB1P53999 PHB2-206ENST00000542294 639 ntTSL 215.31■□□□□ 0.044e-13■□□□□ 9
SUB1P53999 ATP5G3-204ENST00000472782 686 ntTSL 211.19□□□□□ -0.624e-7■□□□□ 9
SUB1P53999 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC17.36■□□□□ 0.376e-7■□□□□ 9
SUB1P53999 RPL21-210ENST00000493317 438 ntTSL 21.39□□□□□ -2.193e-9■□□□□ 9
SUB1P53999 ALAS2-205ENST00000463868 646 ntTSL 310.81□□□□□ -0.681e-9■□□□□ 9
SUB1P53999 ALAS2-207ENST00000493869 658 ntTSL 210.81□□□□□ -0.681e-9■□□□□ 9
SUB1P53999 ALAS2-206ENST00000477869 582 ntTSL 59.16□□□□□ -0.941e-9■□□□□ 9
SUB1P53999 ALAS2-204ENST00000455688 664 ntTSL 24.99□□□□□ -1.611e-9■□□□□ 9
SUB1P53999 COPS6-201ENST00000303904 1432 ntAPPRIS P2 TSL 1 (best) BASIC21.99■■□□□ 1.114e-7■□□□□ 9
SUB1P53999 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC18.76■□□□□ 0.594e-7■□□□□ 9
SUB1P53999 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC15.91■□□□□ 0.144e-7■□□□□ 9
SUB1P53999 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC13.25□□□□□ -0.294e-7■□□□□ 9
SUB1P53999 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC13.05□□□□□ -0.322e-19■□□□□ 9
SUB1P53999 TPM3-208ENST00000341485 2063 ntTSL 1 (best) BASIC12.03□□□□□ -0.484e-7■□□□□ 9
SUB1P53999 TPM3-206ENST00000330188 2108 ntTSL 1 (best) BASIC11.73□□□□□ -0.534e-7■□□□□ 9
SUB1P53999 IFITM2-204ENST00000533141 588 ntAPPRIS ALT2 TSL 4 BASIC11.48□□□□□ -0.574e-7■□□□□ 9
SUB1P53999 COPS6-202ENST00000418625 1107 ntAPPRIS ALT2 TSL 5 BASIC11.23□□□□□ -0.614e-7■□□□□ 9
SUB1P53999 ERP29-202ENST00000455836 1333 ntTSL 2 BASIC9.99□□□□□ -0.812e-19■□□□□ 9
SUB1P53999 IFITM2-203ENST00000527146 634 ntTSL 39.92□□□□□ -0.824e-7■□□□□ 9
SUB1P53999 RAB27A-201ENST00000336787 3446 ntAPPRIS P1 TSL 1 (best) BASIC9.62□□□□□ -0.874e-7■□□□□ 9
SUB1P53999 TPM3-223ENST00000611659 3149 ntTSL 3 BASIC9.6□□□□□ -0.874e-7■□□□□ 9
SUB1P53999 ERP29-201ENST00000261735 1735 ntAPPRIS P1 TSL 1 (best) BASIC9.49□□□□□ -0.892e-19■□□□□ 9
SUB1P53999 IFITM2-202ENST00000399817 659 ntAPPRIS P2 TSL 1 (best) BASIC9.36□□□□□ -0.914e-7■□□□□ 9
SUB1P53999 IFITM2-205ENST00000602569 605 ntAPPRIS ALT2 TSL 1 (best) BASIC9.3□□□□□ -0.924e-7■□□□□ 9
SUB1P53999 TPM3-212ENST00000368533 3131 ntTSL 1 (best) BASIC8.45□□□□□ -1.064e-7■□□□□ 9
SUB1P53999 TPM3-207ENST00000341372 2007 ntTSL 5 BASIC7.74□□□□□ -1.174e-7■□□□□ 9
SUB1P53999 IFITM2-206ENST00000616316 892 ntAPPRIS P2 TSL 1 (best) BASIC7.62□□□□□ -1.194e-7■□□□□ 9
SUB1P53999 TPM3-213ENST00000368545 2147 ntTSL 1 (best)6.91□□□□□ -1.34e-7■□□□□ 9
SUB1P53999 RAB27A-202ENST00000396307 3459 ntAPPRIS P1 TSL 1 (best) BASIC6.67□□□□□ -1.344e-7■□□□□ 9
SUB1P53999 PIK3C3-202ENST00000398870 9206 ntTSL 2 BASIC6.59□□□□□ -1.364e-7■□□□□ 9
SUB1P53999 COPS6-204ENST00000426712 716 ntTSL 36.38□□□□□ -1.394e-7■□□□□ 9
SUB1P53999 TPM3-215ENST00000469717 4041 ntTSL 26.24□□□□□ -1.414e-7■□□□□ 9
SUB1P53999 PIK3C3-204ENST00000586545 1554 ntTSL 1 (best) BASIC5.93□□□□□ -1.464e-7■□□□□ 9
SUB1P53999 RAB27A-205ENST00000564609 1057 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.494e-7■□□□□ 9
SUB1P53999 PIK3C3-201ENST00000262039 9443 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.624e-7■□□□□ 9
SUB1P53999 RAB27A-212ENST00000569493 1013 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.634e-7■□□□□ 9
SUB1P53999 PIK3C3-217ENST00000639914 2722 ntTSL 5 BASIC4.13□□□□□ -1.754e-7■□□□□ 9
SUB1P53999 PIK3C3-213ENST00000590220 168 ntTSL 33.64□□□□□ -1.834e-7■□□□□ 9
SUB1P53999 PRRC2A-204ENST00000462617 1015 ntTSL 512.14□□□□□ -0.478e-7■□□□□ 9
SUB1P53999 PRRC2A-214ENST00000492691 1118 ntTSL 29.76□□□□□ -0.858e-7■□□□□ 9
SUB1P53999 PRRC2A-209ENST00000482441 719 ntTSL 28.41□□□□□ -1.068e-7■□□□□ 9
SUB1P53999 UBE2M-201ENST00000253023 1508 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.43e-9■□□□□ 9
SUB1P53999 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC13.93□□□□□ -0.186e-17■□□□□ 8.9
SUB1P53999 CALM3-212ENST00000599839 1355 ntTSL 1 (best) BASIC12□□□□□ -0.496e-17■□□□□ 8.9
SUB1P53999 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.171e-15■□□□□ 8.9
SUB1P53999 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC14.47□□□□□ -0.091e-15■□□□□ 8.9
SUB1P53999 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC13.64□□□□□ -0.231e-15■□□□□ 8.9
SUB1P53999 RPL29-208ENST00000492277 537 ntTSL 310.97□□□□□ -0.651e-15■□□□□ 8.9
SUB1P53999 RPL29-201ENST00000294189 723 ntAPPRIS P1 TSL 1 (best) BASIC7.82□□□□□ -1.161e-15■□□□□ 8.9
SUB1P53999 RPL29-205ENST00000480306 719 ntTSL 26.47□□□□□ -1.371e-15■□□□□ 8.9
SUB1P53999 RPL29-203ENST00000475248 551 ntAPPRIS P1 TSL 3 BASIC3.14□□□□□ -1.911e-15■□□□□ 8.9
SUB1P53999 RNPEP-202ENST00000367286 2282 ntTSL 5 BASIC18.5■□□□□ 0.558e-8■□□□□ 8.9
SUB1P53999 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.348e-8■□□□□ 8.9
SUB1P53999 RNPEP-206ENST00000471105 2093 ntTSL 1 (best)9.38□□□□□ -0.918e-8■□□□□ 8.9
SUB1P53999 EIF3H-204ENST00000518949 843 ntTSL 37.16□□□□□ -1.261e-10■□□□□ 8.8
SUB1P53999 EIF3H-205ENST00000518995 731 ntTSL 37.16□□□□□ -1.261e-10■□□□□ 8.8
SUB1P53999 EIF3H-211ENST00000522800 635 ntTSL 36.56□□□□□ -1.361e-10■□□□□ 8.8
SUB1P53999 EIF3H-207ENST00000520289 855 ntTSL 22.23□□□□□ -2.051e-10■□□□□ 8.8
SUB1P53999 AHNAK-207ENST00000531324 579 ntAPPRIS ALT2 TSL 314.35□□□□□ -0.112e-9■□□□□ 8.8
SUB1P53999 AHNAK-206ENST00000530285 580 ntAPPRIS ALT2 TSL 310.88□□□□□ -0.672e-9■□□□□ 8.8
SUB1P53999 AHNAK-204ENST00000528508 568 ntAPPRIS ALT2 TSL 49.67□□□□□ -0.862e-9■□□□□ 8.8
SUB1P53999 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.671e-6■□□□□ 8.8
SUB1P53999 HNRNPL-212ENST00000601449 1918 ntTSL 513.78□□□□□ -0.21e-6■□□□□ 8.8
SUB1P53999 HNRNPL-202ENST00000388749 1952 ntTSL 58.63□□□□□ -1.031e-6■□□□□ 8.8
SUB1P53999 COX5B-204ENST00000494306 738 ntTSL 28.76□□□□□ -1.013e-14■□□□□ 8.8
SUB1P53999 RPS5-208ENST00000599909 523 ntTSL 28.06□□□□□ -1.125e-11■□□□□ 8.8
SUB1P53999 GNAS-244ENST00000485673 715 ntTSL 521.33■■□□□ 1.016e-13■□□□□ 8.8
SUB1P53999 GNAS-256ENST00000603546 573 ntTSL 520.07■□□□□ 0.86e-13■□□□□ 8.8
SUB1P53999 GNAS-235ENST00000478585 543 ntTSL 219.53■□□□□ 0.726e-13■□□□□ 8.8
SUB1P53999 GNAS-249ENST00000490374 675 ntTSL 311.95□□□□□ -0.56e-13■□□□□ 8.8
SUB1P53999 GNAS-221ENST00000462499 492 ntTSL 210.08□□□□□ -0.86e-13■□□□□ 8.8
SUB1P53999 GNAS-206ENST00000349036 581 ntTSL 59.33□□□□□ -0.926e-13■□□□□ 8.8
SUB1P53999 GNAS-216ENST00000419558 729 ntTSL 38.16□□□□□ -1.16e-13■□□□□ 8.8
SUB1P53999 GNAS-218ENST00000450130 595 ntTSL 56.71□□□□□ -1.346e-13■□□□□ 8.8
SUB1P53999 CAPN1-220ENST00000530567 1415 ntTSL 216.4■□□□□ 0.226e-7■□□□□ 8.8
SUB1P53999 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.076e-7■□□□□ 8.8
SUB1P53999 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.116e-7■□□□□ 8.8
SUB1P53999 CAPN1-214ENST00000528165 2828 ntTSL 211.81□□□□□ -0.526e-7■□□□□ 8.8
SUB1P53999 CAPN1-202ENST00000524773 2960 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.736e-7■□□□□ 8.8
SUB1P53999 CAPN1-208ENST00000527323 3086 ntAPPRIS P1 TSL 1 (best) BASIC10.09□□□□□ -0.796e-7■□□□□ 8.8
SUB1P53999 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.182e-9■□□□□ 8.8
SUB1P53999 HNRNPA3-201ENST00000392524 2067 ntAPPRIS P3 TSL 5 BASIC13.09□□□□□ -0.312e-9■□□□□ 8.8
SUB1P53999 NDUFC2-204ENST00000528164 561 ntTSL 2 BASIC10.64□□□□□ -0.712e-6■□□□□ 8.8
SUB1P53999 COIL-201ENST00000240316 2650 ntAPPRIS P1 TSL 1 (best) BASIC9.37□□□□□ -0.914e-6■□□□□ 8.8
SUB1P53999 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.268e-9■□□□□ 8.7
SUB1P53999 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC15.92■□□□□ 0.148e-9■□□□□ 8.7
SUB1P53999 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC14.68□□□□□ -0.068e-9■□□□□ 8.7
SUB1P53999 SLC25A39-215ENST00000592372 867 ntTSL 312.69□□□□□ -0.388e-9■□□□□ 8.7
SUB1P53999 SLC25A39-207ENST00000586016 1156 ntTSL 5 BASIC11.41□□□□□ -0.588e-9■□□□□ 8.7
SUB1P53999 SLC25A39-213ENST00000591006 2217 ntTSL 210.78□□□□□ -0.688e-9■□□□□ 8.7
SUB1P53999 NACA-205ENST00000546410 600 ntTSL 22.39□□□□□ -2.037e-13■□□□□ 8.7
SUB1P53999 PSMA7-202ENST00000370861 773 ntTSL 5 BASIC8.69□□□□□ -1.022e-16■□□□□ 8.7
SUB1P53999 EEF1G-202ENST00000524420 557 ntTSL 48.97□□□□□ -0.971e-35■□□□□ 8.7
SUB1P53999 EEF1G-204ENST00000532986 578 ntTSL 48.47□□□□□ -1.051e-35■□□□□ 8.7
SUB1P53999 ACTB-211ENST00000480301 657 ntTSL 1 (best)15.85■□□□□ 0.134e-15■□□□□ 8.7
SUB1P53999 ACTB-210ENST00000477812 820 ntTSL 215.42■□□□□ 0.064e-15■□□□□ 8.7
Retrieved 100 of 11,644 protein–RNA pairs in 242.6 ms