RNA–Protein interactions for RNA: ENST00000528165.5

CAPN1-214, Transcript of calpain 1, humanhuman

TSL 2

Gene CAPN1, Length 2,828 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN1-214ENST00000528165 NISCHQ9Y2I1 1504 aa28.41■■■□□ 2.14
CAPN1-214ENST00000528165 SHROOM4Q9ULL8 1493 aa24.84■■□□□ 1.57
CAPN1-214ENST00000528165 SUPT5HO00267 1087 aaKnown RBP24.68■■□□□ 1.54
CAPN1-214ENST00000528165 HRCP23327 699 aa24.64■■□□□ 1.53
CAPN1-214ENST00000528165 MYO15BQ96JP2 1530 aa24.29■■□□□ 1.48
CAPN1-214ENST00000528165 CHIC1Q5VXU3 224 aa24.24■■□□□ 1.47
CAPN1-214ENST00000528165 PCGF6Q9BYE7 350 aa24.22■■□□□ 1.47
CAPN1-214ENST00000528165 ZCCHC6Q5VYS8 1495 aaKnown RBP24.15■■□□□ 1.46
CAPN1-214ENST00000528165 PPARGC1BQ86YN6 1023 aaKnown RBP24.03■■□□□ 1.44
CAPN1-214ENST00000528165 DCAF1Q9Y4B6 1507 aa23.84■■□□□ 1.41
CAPN1-214ENST00000528165 CCDC180Q9P1Z9 1646 aa23.78■■□□□ 1.4
CAPN1-214ENST00000528165 LOC105371045A0A1W2PR82 267 aa23.59■■□□□ 1.37
CAPN1-214ENST00000528165 TRIM26Q12899 539 aaPredicted RBP23.58■■□□□ 1.36
CAPN1-214ENST00000528165 DCAF8L2P0C7V8 631 aa23.57■■□□□ 1.36
CAPN1-214ENST00000528165 PELP1Q8IZL8 1130 aaKnown RBP23.49■■□□□ 1.35
CAPN1-214ENST00000528165 ZEB1P37275 1124 aaPredicted RBP23.37■■□□□ 1.33
CAPN1-214ENST00000528165 SCAF1Q9H7N4 1312 aaKnown RBP23.12■■□□□ 1.29
CAPN1-214ENST00000528165 TRIM41Q8WV44 630 aa22.91■■□□□ 1.26
CAPN1-214ENST00000528165 ABCC9O60706 1549 aa22.91■■□□□ 1.26
CAPN1-214ENST00000528165 FAM9AQ8IZU1 332 aaPredicted RBP22.8■■□□□ 1.24
CAPN1-214ENST00000528165 RSF1Q96T23 1441 aaPredicted RBP22.76■■□□□ 1.23
CAPN1-214ENST00000528165 ACIN1Q9UKV3 1341 aaKnown RBP22.69■■□□□ 1.22
CAPN1-214ENST00000528165 EHMT2Q96KQ7 1210 aa22.63■■□□□ 1.21
CAPN1-214ENST00000528165 RB1CC1Q8TDY2 1594 aa22.62■■□□□ 1.21
CAPN1-214ENST00000528165 NEUROD1Q13562 356 aa22.59■■□□□ 1.21
CAPN1-214ENST00000528165 MYT1Q01538 1121 aa22.54■■□□□ 1.2
CAPN1-214ENST00000528165 CCER1Q8TC90 406 aaPredicted RBP22.53■■□□□ 1.2
CAPN1-214ENST00000528165 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.53■■□□□ 1.2
CAPN1-214ENST00000528165 SCRIBQ14160 1630 aa22.51■■□□□ 1.19
CAPN1-214ENST00000528165 CENPBP07199 599 aaPredicted RBP22.5■■□□□ 1.19
CAPN1-214ENST00000528165 GTF3C3Q9Y5Q9 886 aa22.46■■□□□ 1.19
CAPN1-214ENST00000528165 DIEXFQ68CQ4 756 aaKnown RBP22.44■■□□□ 1.18
CAPN1-214ENST00000528165 CECR2Q9BXF3 1484 aa22.16■■□□□ 1.14
CAPN1-214ENST00000528165 MROH2BQ7Z745 1585 aa22.14■■□□□ 1.13
CAPN1-214ENST00000528165 WRNQ14191 1432 aaPredicted RBP eCLIP22.1■■□□□ 1.13
CAPN1-214ENST00000528165 TTBK1Q5TCY1 1321 aaPredicted RBP22.08■■□□□ 1.13
CAPN1-214ENST00000528165 ZNF316A6NFI3 1004 aaPredicted RBP22.08■■□□□ 1.13
CAPN1-214ENST00000528165 WIZO95785 1651 aa22.06■■□□□ 1.12
CAPN1-214ENST00000528165 YTHDC1Q96MU7 727 aaKnown RBP21.99■■□□□ 1.11
CAPN1-214ENST00000528165 CEP162Q5TB80 1403 aa21.98■■□□□ 1.11
CAPN1-214ENST00000528165 EIF4G1Q04637 1599 aaKnown RBP21.98■■□□□ 1.11
CAPN1-214ENST00000528165 BAZ1AQ9NRL2 1556 aaPredicted RBP21.95■■□□□ 1.1
CAPN1-214ENST00000528165 TNIKQ9UKE5 1360 aa21.88■■□□□ 1.09
CAPN1-214ENST00000528165 NACADO15069 1562 aa21.88■■□□□ 1.09
CAPN1-214ENST00000528165 CCDC88BA6NC98 1476 aa21.86■■□□□ 1.09
CAPN1-214ENST00000528165 MIER1Q8N108 512 aa21.85■■□□□ 1.09
CAPN1-214ENST00000528165 ABCC8Q09428 1581 aa21.83■■□□□ 1.08
CAPN1-214ENST00000528165 UBTFP17480 764 aaKnown RBP21.76■■□□□ 1.07
CAPN1-214ENST00000528165 SOGA1O94964 1423 aa21.76■■□□□ 1.07
CAPN1-214ENST00000528165 EEA1Q15075 1411 aa21.74■■□□□ 1.07
CAPN1-214ENST00000528165 CSRNP3Q8WYN3 585 aa21.72■■□□□ 1.07
CAPN1-214ENST00000528165 TOP2AP11388 1531 aaKnown RBP21.69■■□□□ 1.06
CAPN1-214ENST00000528165 HNRNPUL2Q1KMD3 747 aaKnown RBP21.67■■□□□ 1.06
CAPN1-214ENST00000528165 GOLGA3Q08378 1498 aa21.64■■□□□ 1.06
CAPN1-214ENST00000528165 RUSC2Q8N2Y8 1516 aa21.61■■□□□ 1.05
CAPN1-214ENST00000528165 SMARCA2P51531 1590 aa21.6■■□□□ 1.05
CAPN1-214ENST00000528165 CLSPNQ9HAW4 1339 aa21.56■■□□□ 1.04
CAPN1-214ENST00000528165 SMARCA4P51532 1647 aa21.5■■□□□ 1.03
CAPN1-214ENST00000528165 SUPT16HQ9Y5B9 1047 aaKnown RBP21.46■■□□□ 1.03
CAPN1-214ENST00000528165 APLP2Q06481 763 aa21.45■■□□□ 1.02
CAPN1-214ENST00000528165 CEP164Q9UPV0 1460 aa21.45■■□□□ 1.02
CAPN1-214ENST00000528165 CLIP1P30622 1438 aa21.44■■□□□ 1.02
CAPN1-214ENST00000528165 VPS8Q8N3P4 1428 aa21.41■■□□□ 1.02
CAPN1-214ENST00000528165 KIF21BO75037 1637 aa21.38■■□□□ 1.01
CAPN1-214ENST00000528165 TSHZ2Q9NRE2 1034 aa21.28■■□□□ 1
CAPN1-214ENST00000528165 BAZ1BQ9UIG0 1483 aaKnown RBP21.28■■□□□ 1
CAPN1-214ENST00000528165 DHX57Q6P158 1386 aaKnown RBP21.27■■□□□ 1
CAPN1-214ENST00000528165 ANP32EQ9BTT0 268 aa21.25■□□□□ 0.99
CAPN1-214ENST00000528165 SYNJ1O43426 1573 aa21.22■□□□□ 0.99
CAPN1-214ENST00000528165 RANGAP1P46060 587 aaPredicted RBP21.2■□□□□ 0.98
CAPN1-214ENST00000528165 RAPGEF2Q9Y4G8 1499 aa21.2■□□□□ 0.98
CAPN1-214ENST00000528165 UNC13AQ9UPW8 1703 aa21.07■□□□□ 0.96
CAPN1-214ENST00000528165 KANK4Q5T7N3 995 aaPredicted RBP21■□□□□ 0.95
CAPN1-214ENST00000528165 PEG3Q9GZU2 1588 aa21■□□□□ 0.95
CAPN1-214ENST00000528165 RRBP1Q9P2E9 1410 aaKnown RBP20.99■□□□□ 0.95
CAPN1-214ENST00000528165 BCANQ96GW7 911 aa20.99■□□□□ 0.95
CAPN1-214ENST00000528165 KCNH8Q96L42 1107 aa20.99■□□□□ 0.95
CAPN1-214ENST00000528165 BCL11AQ9H165 835 aa20.98■□□□□ 0.95
CAPN1-214ENST00000528165 ARAP1Q96P48 1450 aa20.97■□□□□ 0.95
CAPN1-214ENST00000528165 CUX2O14529 1486 aa20.97■□□□□ 0.95
CAPN1-214ENST00000528165 FKBP8Q14318 412 aa20.95■□□□□ 0.94
CAPN1-214ENST00000528165 ERICH3Q5RHP9 1530 aa20.93■□□□□ 0.94
CAPN1-214ENST00000528165 CCNB3Q8WWL7 1395 aa20.91■□□□□ 0.94
CAPN1-214ENST00000528165 TOP2BQ02880 1626 aa20.89■□□□□ 0.93
CAPN1-214ENST00000528165 PRXQ9BXM0 1461 aa20.88■□□□□ 0.93
CAPN1-214ENST00000528165 NEFLP07196 543 aa20.87■□□□□ 0.93
CAPN1-214ENST00000528165 ITGAEP38570 1179 aa20.86■□□□□ 0.93
CAPN1-214ENST00000528165 PABPN1Q86U42 306 aaKnown RBP eCLIP20.86■□□□□ 0.932e-6■■■□□ 15.2
CAPN1-214ENST00000528165 RBM19Q9Y4C8 960 aaKnown RBP20.82■□□□□ 0.92
CAPN1-214ENST00000528165 DDX10Q13206 875 aaKnown RBP20.82■□□□□ 0.92
CAPN1-214ENST00000528165 RAB3GAP2Q9H2M9 1393 aa20.81■□□□□ 0.92
CAPN1-214ENST00000528165 ATAD2BQ9ULI0 1458 aa20.8■□□□□ 0.92
CAPN1-214ENST00000528165 MAPKBP1O60336 1514 aa20.8■□□□□ 0.92
CAPN1-214ENST00000528165 BICRAQ9NZM4 1560 aa20.78■□□□□ 0.92
CAPN1-214ENST00000528165 BIVM-ERCC5R4GMW8 1640 aa20.77■□□□□ 0.92
CAPN1-214ENST00000528165 WDR97A6NE52 1622 aa20.71■□□□□ 0.91
CAPN1-214ENST00000528165 PPP1R15AO75807 674 aaPredicted RBP20.71■□□□□ 0.91
CAPN1-214ENST00000528165 CCER2I3L3R5 266 aa20.7■□□□□ 0.9
CAPN1-214ENST00000528165 SETD5Q9C0A6 1442 aa20.7■□□□□ 0.9
CAPN1-214ENST00000528165 ARHGAP35Q9NRY4 1499 aa20.69■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 60.4 ms