RNA–Protein interactions for RNA: ENST00000341372.7

TPM3-207, Transcript of tropomyosin 3, humanhuman

TSL 5 BASIC

Gene TPM3, Length 2,007 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-207ENST00000341372 NISCHQ9Y2I1 1504 aa24.98■■□□□ 1.59
TPM3-207ENST00000341372 CHIC1Q5VXU3 224 aa24.67■■□□□ 1.54
TPM3-207ENST00000341372 AEBP2Q6ZN18 517 aaPredicted RBP23.8■■□□□ 1.4
TPM3-207ENST00000341372 CCDC180Q9P1Z9 1646 aa22.27■■□□□ 1.16
TPM3-207ENST00000341372 PHF23Q9BUL5 403 aaPredicted RBP22.04■■□□□ 1.12
TPM3-207ENST00000341372 ABCC9O60706 1549 aa21.65■■□□□ 1.06
TPM3-207ENST00000341372 RB1CC1Q8TDY2 1594 aa20.9■□□□□ 0.94
TPM3-207ENST00000341372 NACADO15069 1562 aa20.9■□□□□ 0.94
TPM3-207ENST00000341372 ZCCHC6Q5VYS8 1495 aaKnown RBP20.85■□□□□ 0.93
TPM3-207ENST00000341372 MYO15BQ96JP2 1530 aa20.84■□□□□ 0.93
TPM3-207ENST00000341372 EHMT2Q96KQ7 1210 aa20.82■□□□□ 0.92
TPM3-207ENST00000341372 DCAF1Q9Y4B6 1507 aa20.74■□□□□ 0.91
TPM3-207ENST00000341372 PLPPR3Q6T4P5 718 aa20.69■□□□□ 0.9
TPM3-207ENST00000341372 DCAF8L2P0C7V8 631 aa20.65■□□□□ 0.9
TPM3-207ENST00000341372 UNC13AQ9UPW8 1703 aa20.46■□□□□ 0.87
TPM3-207ENST00000341372 BICRAQ9NZM4 1560 aa20.3■□□□□ 0.84
TPM3-207ENST00000341372 SCRIBQ14160 1630 aa20.23■□□□□ 0.83
TPM3-207ENST00000341372 PABPN1Q86U42 306 aaKnown RBP eCLIP20.17■□□□□ 0.82
TPM3-207ENST00000341372 SHROOM4Q9ULL8 1493 aa20.13■□□□□ 0.81
TPM3-207ENST00000341372 KCNA4P22459 653 aa20.1■□□□□ 0.81
TPM3-207ENST00000341372 SLC24A1O60721 1099 aa20.04■□□□□ 0.8
TPM3-207ENST00000341372 DNAJC5BQ9UF47 199 aa19.84■□□□□ 0.77
TPM3-207ENST00000341372 CSRNP3Q8WYN3 585 aa19.79■□□□□ 0.76
TPM3-207ENST00000341372 EIF4G1Q04637 1599 aaKnown RBP19.74■□□□□ 0.75
TPM3-207ENST00000341372 SENP3Q9H4L4 574 aaPredicted RBP19.66■□□□□ 0.74
TPM3-207ENST00000341372 CC2D2AQ9P2K1 1620 aa19.64■□□□□ 0.73
TPM3-207ENST00000341372 ADRA2BP18089 450 aa19.59■□□□□ 0.73
TPM3-207ENST00000341372 CECR2Q9BXF3 1484 aa19.47■□□□□ 0.71
TPM3-207ENST00000341372 SMARCA4P51532 1647 aa19.4■□□□□ 0.7
TPM3-207ENST00000341372 BAZ1AQ9NRL2 1556 aaPredicted RBP19.37■□□□□ 0.69
TPM3-207ENST00000341372 SLC4A1APQ9BWU0 796 aaKnown RBP19.32■□□□□ 0.68
TPM3-207ENST00000341372 NCAPD3P42695 1498 aa19.27■□□□□ 0.68
TPM3-207ENST00000341372 ATAD2BQ9ULI0 1458 aa19.27■□□□□ 0.67
TPM3-207ENST00000341372 SMARCA2P51531 1590 aa19.26■□□□□ 0.67
TPM3-207ENST00000341372 PEG3Q9GZU2 1588 aa19.26■□□□□ 0.67
TPM3-207ENST00000341372 MROH2BQ7Z745 1585 aa19.24■□□□□ 0.67
TPM3-207ENST00000341372 HMGXB3Q12766 1538 aa19.21■□□□□ 0.67
TPM3-207ENST00000341372 RTN4Q9NQC3 1192 aaKnown RBP19.2■□□□□ 0.66
TPM3-207ENST00000341372 BAZ1BQ9UIG0 1483 aaKnown RBP19.09■□□□□ 0.65
TPM3-207ENST00000341372 WIZO95785 1651 aa19.03■□□□□ 0.64
TPM3-207ENST00000341372 RSF1Q96T23 1441 aaPredicted RBP19.01■□□□□ 0.63
TPM3-207ENST00000341372 PPP6R1Q9UPN7 881 aa18.95■□□□□ 0.62
TPM3-207ENST00000341372 AMER1Q5JTC6 1135 aaPredicted RBP18.94■□□□□ 0.62
TPM3-207ENST00000341372 TOP2AP11388 1531 aaKnown RBP18.86■□□□□ 0.61
TPM3-207ENST00000341372 LAMC3Q9Y6N6 1575 aa18.77■□□□□ 0.6
TPM3-207ENST00000341372 NESP48681 1621 aa18.75■□□□□ 0.59
TPM3-207ENST00000341372 CADPSQ9ULU8 1353 aa18.67■□□□□ 0.58
TPM3-207ENST00000341372 ERCC6Q03468 1493 aa18.65■□□□□ 0.58
TPM3-207ENST00000341372 ZBTB22O15209 634 aa18.62■□□□□ 0.57
TPM3-207ENST00000341372 CFTRP13569 1480 aa18.6■□□□□ 0.57
TPM3-207ENST00000341372 CCDC88BA6NC98 1476 aa18.59■□□□□ 0.57
TPM3-207ENST00000341372 PDS5BQ9NTI5 1447 aa18.59■□□□□ 0.57
TPM3-207ENST00000341372 KIF21AQ7Z4S6 1674 aa18.58■□□□□ 0.57
TPM3-207ENST00000341372 THOC2Q8NI27 1593 aaKnown RBP18.55■□□□□ 0.56
TPM3-207ENST00000341372 CUX2O14529 1486 aa18.53■□□□□ 0.56
TPM3-207ENST00000341372 PPP4R3CPQ6ZMV5 832 aa18.52■□□□□ 0.56
TPM3-207ENST00000341372 PRDM2Q13029 1718 aa18.52■□□□□ 0.55
TPM3-207ENST00000341372 FANCD2Q9BXW9 1451 aa18.46■□□□□ 0.55
TPM3-207ENST00000341372 CEP164Q9UPV0 1460 aa18.44■□□□□ 0.54
TPM3-207ENST00000341372 MRC2Q9UBG0 1479 aa18.43■□□□□ 0.54
TPM3-207ENST00000341372 WDR62O43379 1518 aa18.4■□□□□ 0.54
TPM3-207ENST00000341372 SUPT5HO00267 1087 aaKnown RBP18.39■□□□□ 0.53
TPM3-207ENST00000341372 NCBP3Q53F19 620 aaKnown RBP18.33■□□□□ 0.53
TPM3-207ENST00000341372 NPM3O75607 178 aaKnown RBP18.3■□□□□ 0.52
TPM3-207ENST00000341372 URB2Q14146 1524 aaKnown RBP18.29■□□□□ 0.52
TPM3-207ENST00000341372 FOXD1Q16676 465 aa18.22■□□□□ 0.51
TPM3-207ENST00000341372 ABCC8Q09428 1581 aa18.19■□□□□ 0.5
TPM3-207ENST00000341372 DNMBPQ6XZF7 1577 aa18.19■□□□□ 0.5
TPM3-207ENST00000341372 TOPBP1Q92547 1522 aa18.18■□□□□ 0.5
TPM3-207ENST00000341372 IFT140Q96RY7 1462 aa18.06■□□□□ 0.48
TPM3-207ENST00000341372 CUX1P39880 1505 aa18.06■□□□□ 0.48
TPM3-207ENST00000341372 POLA1P09884 1462 aaPredicted RBP18.03■□□□□ 0.48
TPM3-207ENST00000341372 TARBP1Q13395 1621 aaKnown RBP18.02■□□□□ 0.47
TPM3-207ENST00000341372 FGD5Q6ZNL6 1462 aa17.98■□□□□ 0.47
TPM3-207ENST00000341372 ZNF608Q9ULD9 1512 aaPredicted RBP17.96■□□□□ 0.47
TPM3-207ENST00000341372 BIVM-ERCC5R4GMW8 1640 aa17.94■□□□□ 0.46
TPM3-207ENST00000341372 EIF4G3O43432 1585 aaKnown RBP17.94■□□□□ 0.46
TPM3-207ENST00000341372 TOP2BQ02880 1626 aa17.92■□□□□ 0.46
TPM3-207ENST00000341372 WDR97A6NE52 1622 aa17.92■□□□□ 0.46
TPM3-207ENST00000341372 WRNQ14191 1432 aaPredicted RBP eCLIP17.91■□□□□ 0.469e-7■■■□□ 18.8
TPM3-207ENST00000341372 RAD54L2Q9Y4B4 1467 aa17.91■□□□□ 0.46
TPM3-207ENST00000341372 SOGA1O94964 1423 aa17.91■□□□□ 0.46
TPM3-207ENST00000341372 SYNJ1O43426 1573 aa17.9■□□□□ 0.46
TPM3-207ENST00000341372 DNAJC5Q9H3Z4 198 aa17.87■□□□□ 0.45
TPM3-207ENST00000341372 FOXD4L1Q9NU39 408 aa17.86■□□□□ 0.45
TPM3-207ENST00000341372 AQRO60306 1485 aaKnown RBP eCLIP17.84■□□□□ 0.454e-7■■□□□ 12.7
TPM3-207ENST00000341372 ABCA10Q8WWZ4 1543 aa17.83■□□□□ 0.44
TPM3-207ENST00000341372 ABCA5Q8WWZ7 1642 aa17.78■□□□□ 0.44
TPM3-207ENST00000341372 TDRD9Q8NDG6 1382 aaKnown RBP17.78■□□□□ 0.44
TPM3-207ENST00000341372 PBRM1Q86U86 1689 aa17.74■□□□□ 0.43
TPM3-207ENST00000341372 GRIN2BQ13224 1484 aa17.74■□□□□ 0.43
TPM3-207ENST00000341372 GAPVD1Q14C86 1478 aa17.73■□□□□ 0.43
TPM3-207ENST00000341372 FKBP8Q14318 412 aa17.72■□□□□ 0.43
TPM3-207ENST00000341372 MAGI1Q96QZ7 1491 aaPredicted RBP17.72■□□□□ 0.43
TPM3-207ENST00000341372 SNAPC4Q5SXM2 1469 aa17.7■□□□□ 0.42
TPM3-207ENST00000341372 CHD1O14646 1710 aa17.7■□□□□ 0.42
TPM3-207ENST00000341372 PRKCSHP14314 528 aaPredicted RBP17.69■□□□□ 0.42
TPM3-207ENST00000341372 OSCARQ8IYS5 282 aa17.66■□□□□ 0.42
TPM3-207ENST00000341372 SYNJ2O15056 1496 aa17.63■□□□□ 0.41
TPM3-207ENST00000341372 ERICH3Q5RHP9 1530 aa17.62■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms