RNA–Protein interactions for RNA: ENST00000368545.7

TPM3-213, Transcript of tropomyosin 3, humanhuman

TSL 1 (best)

Gene TPM3, Length 2,147 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-213ENST00000368545 CHIC1Q5VXU3 224 aa24■■□□□ 1.43
TPM3-213ENST00000368545 AEBP2Q6ZN18 517 aaPredicted RBP23.53■■□□□ 1.36
TPM3-213ENST00000368545 PHF23Q9BUL5 403 aaPredicted RBP21.34■■□□□ 1.01
TPM3-213ENST00000368545 PLPPR3Q6T4P5 718 aa19.97■□□□□ 0.79
TPM3-213ENST00000368545 NISCHQ9Y2I1 1504 aa19.84■□□□□ 0.77
TPM3-213ENST00000368545 SENP3Q9H4L4 574 aaPredicted RBP19.62■□□□□ 0.73
TPM3-213ENST00000368545 EHMT2Q96KQ7 1210 aa18.95■□□□□ 0.62
TPM3-213ENST00000368545 ADRA2BP18089 450 aa18.83■□□□□ 0.61
TPM3-213ENST00000368545 KCNA4P22459 653 aa18.78■□□□□ 0.6
TPM3-213ENST00000368545 ABCC9O60706 1549 aa18.74■□□□□ 0.59
TPM3-213ENST00000368545 PPP6R1Q9UPN7 881 aa18.47■□□□□ 0.55
TPM3-213ENST00000368545 CCDC180Q9P1Z9 1646 aa18.43■□□□□ 0.54
TPM3-213ENST00000368545 FOXD1Q16676 465 aa18.17■□□□□ 0.5
TPM3-213ENST00000368545 CSRNP3Q8WYN3 585 aa18.17■□□□□ 0.5
TPM3-213ENST00000368545 DNAJC5BQ9UF47 199 aa18.13■□□□□ 0.49
TPM3-213ENST00000368545 SLC4A1APQ9BWU0 796 aaKnown RBP18.02■□□□□ 0.48
TPM3-213ENST00000368545 RB1CC1Q8TDY2 1594 aa17.87■□□□□ 0.45
TPM3-213ENST00000368545 PPP4R3CPQ6ZMV5 832 aa17.79■□□□□ 0.44
TPM3-213ENST00000368545 DNAJC5Q9H3Z4 198 aa17.63■□□□□ 0.41
TPM3-213ENST00000368545 NACADO15069 1562 aa17.59■□□□□ 0.41
TPM3-213ENST00000368545 NCBP3Q53F19 620 aaKnown RBP17.56■□□□□ 0.4
TPM3-213ENST00000368545 NPM3O75607 178 aaKnown RBP17.44■□□□□ 0.38
TPM3-213ENST00000368545 PIAS4Q8N2W9 510 aaPredicted RBP17.39■□□□□ 0.38
TPM3-213ENST00000368545 SHROOM4Q9ULL8 1493 aa17.39■□□□□ 0.37
TPM3-213ENST00000368545 ZBTB22O15209 634 aa17.35■□□□□ 0.37
TPM3-213ENST00000368545 MYO15BQ96JP2 1530 aa17.24■□□□□ 0.35
TPM3-213ENST00000368545 SLC24A1O60721 1099 aa17.18■□□□□ 0.34
TPM3-213ENST00000368545 UNC13AQ9UPW8 1703 aa17.17■□□□□ 0.34
TPM3-213ENST00000368545 PABPN1Q86U42 306 aaKnown RBP eCLIP17.15■□□□□ 0.34
TPM3-213ENST00000368545 CECR2Q9BXF3 1484 aa17.14■□□□□ 0.33
TPM3-213ENST00000368545 BICRAQ9NZM4 1560 aa17.14■□□□□ 0.33
TPM3-213ENST00000368545 CC2D2AQ9P2K1 1620 aa17.03■□□□□ 0.32
TPM3-213ENST00000368545 RTN4Q9NQC3 1192 aaKnown RBP17■□□□□ 0.31
TPM3-213ENST00000368545 CNKSR2Q8WXI2 1034 aa16.99■□□□□ 0.31
TPM3-213ENST00000368545 CUX2O14529 1486 aa16.93■□□□□ 0.3
TPM3-213ENST00000368545 FOXD4L1Q9NU39 408 aa16.85■□□□□ 0.29
TPM3-213ENST00000368545 AMER1Q5JTC6 1135 aaPredicted RBP16.85■□□□□ 0.29
TPM3-213ENST00000368545 EIF4G1Q04637 1599 aaKnown RBP16.84■□□□□ 0.29
TPM3-213ENST00000368545 SCAF1Q9H7N4 1312 aaKnown RBP16.73■□□□□ 0.27
TPM3-213ENST00000368545 DCAF8L2P0C7V8 631 aa16.67■□□□□ 0.26
TPM3-213ENST00000368545 DCAF1Q9Y4B6 1507 aa16.63■□□□□ 0.25
TPM3-213ENST00000368545 ZCCHC6Q5VYS8 1495 aaKnown RBP16.5■□□□□ 0.23
TPM3-213ENST00000368545 MAPK8IP2Q13387 824 aaPredicted RBP16.46■□□□□ 0.23
TPM3-213ENST00000368545 ERCC6Q03468 1493 aa16.42■□□□□ 0.22
TPM3-213ENST00000368545 RNF216Q9NWF9 866 aaPredicted RBP16.37■□□□□ 0.21
TPM3-213ENST00000368545 SCRIBQ14160 1630 aa16.36■□□□□ 0.21
TPM3-213ENST00000368545 FKBP8Q14318 412 aa16.32■□□□□ 0.2
TPM3-213ENST00000368545 SLC4A2P04920 1241 aa16.21■□□□□ 0.19
TPM3-213ENST00000368545 TRIM41Q8WV44 630 aa16.21■□□□□ 0.19
TPM3-213ENST00000368545 MSH5O43196 834 aa16.16■□□□□ 0.18
TPM3-213ENST00000368545 NCAPD3P42695 1498 aa16.16■□□□□ 0.18
TPM3-213ENST00000368545 ATXN8OSP0DMR3 200 aa16.09■□□□□ 0.17
TPM3-213ENST00000368545 THOC2Q8NI27 1593 aaKnown RBP16.07■□□□□ 0.16
TPM3-213ENST00000368545 HMGXB3Q12766 1538 aa16.03■□□□□ 0.16
TPM3-213ENST00000368545 HOXD11P31277 338 aaPredicted RBP16.01■□□□□ 0.15
TPM3-213ENST00000368545 MYCNP04198 464 aaPredicted RBP16■□□□□ 0.15
TPM3-213ENST00000368545 LAMC3Q9Y6N6 1575 aa15.98■□□□□ 0.15
TPM3-213ENST00000368545 SMARCA2P51531 1590 aa15.96■□□□□ 0.15
TPM3-213ENST00000368545 PDS5BQ9NTI5 1447 aa15.9■□□□□ 0.14
TPM3-213ENST00000368545 DMRT2Q9Y5R5 561 aa15.88■□□□□ 0.13
TPM3-213ENST00000368545 ATAD2BQ9ULI0 1458 aa15.86■□□□□ 0.13
TPM3-213ENST00000368545 BAZ1AQ9NRL2 1556 aaPredicted RBP15.83■□□□□ 0.12
TPM3-213ENST00000368545 OSCARQ8IYS5 282 aa15.81■□□□□ 0.12
TPM3-213ENST00000368545 NESP48681 1621 aa15.78■□□□□ 0.12
TPM3-213ENST00000368545 MRC2Q9UBG0 1479 aa15.75■□□□□ 0.11
TPM3-213ENST00000368545 WDR62O43379 1518 aa15.75■□□□□ 0.11
TPM3-213ENST00000368545 KIF21AQ7Z4S6 1674 aa15.7■□□□□ 0.1
TPM3-213ENST00000368545 BAZ1BQ9UIG0 1483 aaKnown RBP15.69■□□□□ 0.1
TPM3-213ENST00000368545 PEG3Q9GZU2 1588 aa15.67■□□□□ 0.1
TPM3-213ENST00000368545 SMARCA4P51532 1647 aa15.65■□□□□ 0.1
TPM3-213ENST00000368545 ATF5Q9Y2D1 282 aaPredicted RBP15.65■□□□□ 0.1
TPM3-213ENST00000368545 RIMBP3CA6NJZ7 1639 aa15.63■□□□□ 0.09
TPM3-213ENST00000368545 RIMBP3BA6NNM3 1639 aa15.63■□□□□ 0.09
TPM3-213ENST00000368545 RIMBP3Q9UFD9 1639 aa15.63■□□□□ 0.09
TPM3-213ENST00000368545 PLCB2Q00722 1185 aa15.55■□□□□ 0.08
TPM3-213ENST00000368545 CADPSQ9ULU8 1353 aa15.55■□□□□ 0.08
TPM3-213ENST00000368545 ARHGEF11O15085 1522 aa15.51■□□□□ 0.07
TPM3-213ENST00000368545 CEP164Q9UPV0 1460 aa15.48■□□□□ 0.07
TPM3-213ENST00000368545 TRHP20396 242 aaPredicted RBP15.39■□□□□ 0.05
TPM3-213ENST00000368545 RSF1Q96T23 1441 aaPredicted RBP15.38■□□□□ 0.05
TPM3-213ENST00000368545 HAP1P54257 671 aaPredicted RBP15.34■□□□□ 0.05
TPM3-213ENST00000368545 FANCD2Q9BXW9 1451 aa15.32■□□□□ 0.04
TPM3-213ENST00000368545 PRKCSHP14314 528 aaPredicted RBP15.3■□□□□ 0.04
TPM3-213ENST00000368545 IFT140Q96RY7 1462 aa15.29■□□□□ 0.04
TPM3-213ENST00000368545 FBXO3Q9UK99 471 aa15.29■□□□□ 0.04
TPM3-213ENST00000368545 SAMD1Q6SPF0 538 aaPredicted RBP15.29■□□□□ 0.04
TPM3-213ENST00000368545 SUPT5HO00267 1087 aaKnown RBP15.26■□□□□ 0.03
TPM3-213ENST00000368545 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.26■□□□□ 0.037e-9■■■■□ 19.7
TPM3-213ENST00000368545 ARAP1Q96P48 1450 aa15.25■□□□□ 0.03
TPM3-213ENST00000368545 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.25■□□□□ 0.03
TPM3-213ENST00000368545 HNRNPUL2Q1KMD3 747 aaKnown RBP15.25■□□□□ 0.03
TPM3-213ENST00000368545 CYB5RLQ6IPT4 315 aa15.25■□□□□ 0.03
TPM3-213ENST00000368545 BCANQ96GW7 911 aa15.23■□□□□ 0.03
TPM3-213ENST00000368545 CFTRP13569 1480 aa15.21■□□□□ 0.02
TPM3-213ENST00000368545 U3KPZ7 1027 aaPredicted RBP15.2■□□□□ 0.02
TPM3-213ENST00000368545 ABCC8Q09428 1581 aa15.17■□□□□ 0.02
TPM3-213ENST00000368545 URB2Q14146 1524 aaKnown RBP15.17■□□□□ 0.02
TPM3-213ENST00000368545 DCAF8L1A6NGE4 600 aa15.17■□□□□ 0.02
TPM3-213ENST00000368545 SPDYE4A6NLX3 237 aa15.15■□□□□ 0.02
TPM3-213ENST00000368545 VASPP50552 380 aaPredicted RBP15.14■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 53 ms