RNA–Protein interactions for RNA: ENST00000530567.1

CAPN1-220, Transcript of calpain 1, humanhuman

TSL 2

Gene CAPN1, Length 1,415 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN1-220ENST00000530567 NISCHQ9Y2I1 1504 aa51.26■■■■■ 5.8
CAPN1-220ENST00000530567 CCDC180Q9P1Z9 1646 aa45.38■■■■■ 4.85
CAPN1-220ENST00000530567 ABCC9O60706 1549 aa43.95■■■■■ 4.63
CAPN1-220ENST00000530567 ZCCHC6Q5VYS8 1495 aaKnown RBP42.83■■■■■ 4.45
CAPN1-220ENST00000530567 NACADO15069 1562 aa42.53■■■■■ 4.4
CAPN1-220ENST00000530567 DCAF8L2P0C7V8 631 aa42.49■■■■■ 4.39
CAPN1-220ENST00000530567 MYO15BQ96JP2 1530 aa42.45■■■■■ 4.39
CAPN1-220ENST00000530567 RB1CC1Q8TDY2 1594 aa42.45■■■■■ 4.39
CAPN1-220ENST00000530567 DCAF1Q9Y4B6 1507 aa42.44■■■■■ 4.39
CAPN1-220ENST00000530567 UNC13AQ9UPW8 1703 aa41.58■■■■■ 4.25
CAPN1-220ENST00000530567 SCRIBQ14160 1630 aa41.45■■■■■ 4.23
CAPN1-220ENST00000530567 BICRAQ9NZM4 1560 aa41.25■■■■■ 4.19
CAPN1-220ENST00000530567 PABPN1Q86U42 306 aaKnown RBP eCLIP41.12■■■■■ 4.172e-6■■■□□ 15.2
CAPN1-220ENST00000530567 SHROOM4Q9ULL8 1493 aa40.79■■■■■ 4.12
CAPN1-220ENST00000530567 EIF4G1Q04637 1599 aaKnown RBP40.08■■■■■ 4.01
CAPN1-220ENST00000530567 DNAJC5BQ9UF47 199 aa39.96■■■■□ 3.99
CAPN1-220ENST00000530567 CECR2Q9BXF3 1484 aa39.91■■■■□ 3.98
CAPN1-220ENST00000530567 CC2D2AQ9P2K1 1620 aa39.8■■■■□ 3.96
CAPN1-220ENST00000530567 SMARCA4P51532 1647 aa39.69■■■■□ 3.94
CAPN1-220ENST00000530567 BAZ1AQ9NRL2 1556 aaPredicted RBP39.68■■■■□ 3.94
CAPN1-220ENST00000530567 MROH2BQ7Z745 1585 aa39.54■■■■□ 3.92
CAPN1-220ENST00000530567 ATAD2BQ9ULI0 1458 aa39.35■■■■□ 3.89
CAPN1-220ENST00000530567 PEG3Q9GZU2 1588 aa39.32■■■■□ 3.88
CAPN1-220ENST00000530567 SMARCA2P51531 1590 aa39.29■■■■□ 3.88
CAPN1-220ENST00000530567 NCAPD3P42695 1498 aa39.25■■■■□ 3.87
CAPN1-220ENST00000530567 RSF1Q96T23 1441 aaPredicted RBP39.23■■■■□ 3.87
CAPN1-220ENST00000530567 WIZO95785 1651 aa39.13■■■■□ 3.85
CAPN1-220ENST00000530567 HMGXB3Q12766 1538 aa39.12■■■■□ 3.85
CAPN1-220ENST00000530567 BAZ1BQ9UIG0 1483 aaKnown RBP39.03■■■■□ 3.84
CAPN1-220ENST00000530567 TOP2AP11388 1531 aaKnown RBP38.73■■■■□ 3.79
CAPN1-220ENST00000530567 SUPT5HO00267 1087 aaKnown RBP38.46■■■■□ 3.75
CAPN1-220ENST00000530567 CCDC88BA6NC98 1476 aa38.25■■■■□ 3.71
CAPN1-220ENST00000530567 NESP48681 1621 aa38.2■■■■□ 3.71
CAPN1-220ENST00000530567 LAMC3Q9Y6N6 1575 aa38.14■■■■□ 3.7
CAPN1-220ENST00000530567 CADPSQ9ULU8 1353 aa38.11■■■■□ 3.69
CAPN1-220ENST00000530567 CFTRP13569 1480 aa38.01■■■■□ 3.68
CAPN1-220ENST00000530567 PDS5BQ9NTI5 1447 aa37.82■■■■□ 3.64
CAPN1-220ENST00000530567 ERCC6Q03468 1493 aa37.8■■■■□ 3.64
CAPN1-220ENST00000530567 PRDM2Q13029 1718 aa37.77■■■■□ 3.64
CAPN1-220ENST00000530567 KIF21AQ7Z4S6 1674 aa37.76■■■■□ 3.64
CAPN1-220ENST00000530567 FANCD2Q9BXW9 1451 aa37.69■■■■□ 3.62
CAPN1-220ENST00000530567 CEP164Q9UPV0 1460 aa37.59■■■■□ 3.61
CAPN1-220ENST00000530567 THOC2Q8NI27 1593 aaKnown RBP37.55■■■■□ 3.6
CAPN1-220ENST00000530567 MRC2Q9UBG0 1479 aa37.46■■■■□ 3.59
CAPN1-220ENST00000530567 WDR62O43379 1518 aa37.35■■■■□ 3.57
CAPN1-220ENST00000530567 URB2Q14146 1524 aaKnown RBP37.32■■■■□ 3.56
CAPN1-220ENST00000530567 CUX2O14529 1486 aa37.27■■■■□ 3.56
CAPN1-220ENST00000530567 TOPBP1Q92547 1522 aa37.16■■■■□ 3.54
CAPN1-220ENST00000530567 DNMBPQ6XZF7 1577 aa37.14■■■■□ 3.54
CAPN1-220ENST00000530567 ABCC8Q09428 1581 aa37.11■■■■□ 3.53
CAPN1-220ENST00000530567 CUX1P39880 1505 aa37.07■■■■□ 3.52
CAPN1-220ENST00000530567 WRNQ14191 1432 aaPredicted RBP eCLIP36.95■■■■□ 3.5
CAPN1-220ENST00000530567 SYNJ1O43426 1573 aa36.89■■■■□ 3.5
CAPN1-220ENST00000530567 POLA1P09884 1462 aaPredicted RBP36.88■■■■□ 3.49
CAPN1-220ENST00000530567 BIVM-ERCC5R4GMW8 1640 aa36.85■■■■□ 3.49
CAPN1-220ENST00000530567 FGD5Q6ZNL6 1462 aa36.85■■■■□ 3.49
CAPN1-220ENST00000530567 TOP2BQ02880 1626 aa36.84■■■■□ 3.49
CAPN1-220ENST00000530567 IFT140Q96RY7 1462 aa36.78■■■■□ 3.48
CAPN1-220ENST00000530567 TARBP1Q13395 1621 aaKnown RBP36.74■■■■□ 3.47
CAPN1-220ENST00000530567 RAD54L2Q9Y4B4 1467 aa36.7■■■■□ 3.47
CAPN1-220ENST00000530567 SOGA1O94964 1423 aa36.67■■■■□ 3.46
CAPN1-220ENST00000530567 ZNF608Q9ULD9 1512 aaPredicted RBP36.63■■■■□ 3.45
CAPN1-220ENST00000530567 WDR97A6NE52 1622 aa36.57■■■■□ 3.44
CAPN1-220ENST00000530567 ABCA10Q8WWZ4 1543 aa36.51■■■■□ 3.43
CAPN1-220ENST00000530567 EIF4G3O43432 1585 aaKnown RBP36.5■■■■□ 3.43
CAPN1-220ENST00000530567 AQRO60306 1485 aaKnown RBP eCLIP36.44■■■■□ 3.423e-7■■■■□ 24.7
CAPN1-220ENST00000530567 TDRD9Q8NDG6 1382 aaKnown RBP36.43■■■■□ 3.42
CAPN1-220ENST00000530567 ABCA5Q8WWZ7 1642 aa36.36■■■■□ 3.41
CAPN1-220ENST00000530567 TRIM41Q8WV44 630 aa36.29■■■■□ 3.4
CAPN1-220ENST00000530567 GAPVD1Q14C86 1478 aa36.28■■■■□ 3.4
CAPN1-220ENST00000530567 GRIN2BQ13224 1484 aa36.21■■■■□ 3.39
CAPN1-220ENST00000530567 CHIC1Q5VXU3 224 aa36.21■■■■□ 3.39
CAPN1-220ENST00000530567 PBRM1Q86U86 1689 aa36.21■■■■□ 3.39
CAPN1-220ENST00000530567 SNAPC4Q5SXM2 1469 aa36.13■■■■□ 3.37
CAPN1-220ENST00000530567 KIF27Q86VH2 1401 aa36.11■■■■□ 3.37
CAPN1-220ENST00000530567 MAGI1Q96QZ7 1491 aaPredicted RBP36.08■■■■□ 3.37
CAPN1-220ENST00000530567 ERICH3Q5RHP9 1530 aa36.06■■■■□ 3.36
CAPN1-220ENST00000530567 RUSC2Q8N2Y8 1516 aa35.99■■■■□ 3.35
CAPN1-220ENST00000530567 ADAMTS12P58397 1594 aa35.97■■■■□ 3.35
CAPN1-220ENST00000530567 CHD1O14646 1710 aa35.95■■■■□ 3.35
CAPN1-220ENST00000530567 SYNJ2O15056 1496 aa35.93■■■■□ 3.34
CAPN1-220ENST00000530567 IGF1RP08069 1367 aa35.93■■■■□ 3.34
CAPN1-220ENST00000530567 FHAD1B1AJZ9 1412 aa35.87■■■■□ 3.33
CAPN1-220ENST00000530567 CUL7Q14999 1698 aa35.82■■■■□ 3.33
CAPN1-220ENST00000530567 FBLN2P98095 1184 aa35.81■■■■□ 3.32
CAPN1-220ENST00000530567 CHMP7Q8WUX9 453 aaPredicted RBP35.8■■■■□ 3.32
CAPN1-220ENST00000530567 GRIN2AQ12879 1464 aa35.77■■■■□ 3.32
CAPN1-220ENST00000530567 OSCARQ8IYS5 282 aa35.74■■■■□ 3.31
CAPN1-220ENST00000530567 EEA1Q15075 1411 aa35.71■■■■□ 3.31
CAPN1-220ENST00000530567 CARMIL1Q5VZK9 1371 aa35.71■■■■□ 3.31
CAPN1-220ENST00000530567 NUP160Q12769 1436 aa35.62■■■■□ 3.29
CAPN1-220ENST00000530567 CEP170Q5SW79 1584 aa35.61■■■■□ 3.29
CAPN1-220ENST00000530567 PRXQ9BXM0 1461 aa35.59■■■■□ 3.29
CAPN1-220ENST00000530567 CLASP1Q7Z460 1538 aa35.59■■■■□ 3.29
CAPN1-220ENST00000530567 DNAJC5Q9H3Z4 198 aa35.58■■■■□ 3.29
CAPN1-220ENST00000530567 CSRNP3Q8WYN3 585 aa35.57■■■■□ 3.29
CAPN1-220ENST00000530567 RAPGEF2Q9Y4G8 1499 aa35.55■■■■□ 3.28
CAPN1-220ENST00000530567 FAM9AQ8IZU1 332 aaPredicted RBP35.55■■■■□ 3.28
CAPN1-220ENST00000530567 KIF21BO75037 1637 aa35.37■■■■□ 3.25
CAPN1-220ENST00000530567 KIAA0586Q9BVV6 1533 aa35.35■■■■□ 3.25
Retrieved 100 of 20,778 RNA–protein pairs in 78.4 ms