RNA–Protein interactions for RNA: ENST00000330188.13

TPM3-206, Transcript of tropomyosin 3, humanhuman

TSL 1 (best) BASIC

Gene TPM3, Length 2,108 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-206ENST00000330188 NISCHQ9Y2I1 1504 aa31.16■■■□□ 2.58
TPM3-206ENST00000330188 CCDC180Q9P1Z9 1646 aa26.75■■□□□ 1.87
TPM3-206ENST00000330188 ZCCHC6Q5VYS8 1495 aaKnown RBP26.33■■□□□ 1.81
TPM3-206ENST00000330188 SHROOM4Q9ULL8 1493 aa26.12■■□□□ 1.77
TPM3-206ENST00000330188 DCAF1Q9Y4B6 1507 aa25.67■■□□□ 1.7
TPM3-206ENST00000330188 DCAF8L2P0C7V8 631 aa25.6■■□□□ 1.69
TPM3-206ENST00000330188 SUPT5HO00267 1087 aaKnown RBP25.48■■□□□ 1.67
TPM3-206ENST00000330188 MYO15BQ96JP2 1530 aa25.05■■□□□ 1.6
TPM3-206ENST00000330188 SCRIBQ14160 1630 aa24.85■■□□□ 1.57
TPM3-206ENST00000330188 ABCC9O60706 1549 aa24.81■■□□□ 1.56
TPM3-206ENST00000330188 CHIC1Q5VXU3 224 aa24.74■■□□□ 1.55
TPM3-206ENST00000330188 NACADO15069 1562 aa24.73■■□□□ 1.55
TPM3-206ENST00000330188 RSF1Q96T23 1441 aaPredicted RBP24.5■■□□□ 1.51
TPM3-206ENST00000330188 RB1CC1Q8TDY2 1594 aa24.36■■□□□ 1.49
TPM3-206ENST00000330188 CECR2Q9BXF3 1484 aa24.24■■□□□ 1.47
TPM3-206ENST00000330188 MROH2BQ7Z745 1585 aa24.16■■□□□ 1.46
TPM3-206ENST00000330188 WIZO95785 1651 aa24.04■■□□□ 1.44
TPM3-206ENST00000330188 UNC13AQ9UPW8 1703 aa24.03■■□□□ 1.44
TPM3-206ENST00000330188 BAZ1AQ9NRL2 1556 aaPredicted RBP23.97■■□□□ 1.43
TPM3-206ENST00000330188 LOC105371045A0A1W2PR82 267 aa23.9■■□□□ 1.42
TPM3-206ENST00000330188 TRIM41Q8WV44 630 aa23.81■■□□□ 1.4
TPM3-206ENST00000330188 SMARCA4P51532 1647 aa23.81■■□□□ 1.4
TPM3-206ENST00000330188 TOP2AP11388 1531 aaKnown RBP23.72■■□□□ 1.39
TPM3-206ENST00000330188 BICRAQ9NZM4 1560 aa23.7■■□□□ 1.38
TPM3-206ENST00000330188 EIF4G1Q04637 1599 aaKnown RBP23.69■■□□□ 1.38
TPM3-206ENST00000330188 PCGF6Q9BYE7 350 aa23.6■■□□□ 1.37
TPM3-206ENST00000330188 SMARCA2P51531 1590 aa23.56■■□□□ 1.36
TPM3-206ENST00000330188 PABPN1Q86U42 306 aaKnown RBP eCLIP23.54■■□□□ 1.36
TPM3-206ENST00000330188 CCDC88BA6NC98 1476 aa23.54■■□□□ 1.36
TPM3-206ENST00000330188 FAM9AQ8IZU1 332 aaPredicted RBP23.51■■□□□ 1.35
TPM3-206ENST00000330188 HRCP23327 699 aa23.5■■□□□ 1.35
TPM3-206ENST00000330188 PEG3Q9GZU2 1588 aa23.43■■□□□ 1.34
TPM3-206ENST00000330188 ABCC8Q09428 1581 aa23.35■■□□□ 1.33
TPM3-206ENST00000330188 TRIM26Q12899 539 aaPredicted RBP23.32■■□□□ 1.32
TPM3-206ENST00000330188 EHMT2Q96KQ7 1210 aa23.23■■□□□ 1.31
TPM3-206ENST00000330188 ATAD2BQ9ULI0 1458 aa23.22■■□□□ 1.31
TPM3-206ENST00000330188 BAZ1BQ9UIG0 1483 aaKnown RBP23.13■■□□□ 1.29
TPM3-206ENST00000330188 SOGA1O94964 1423 aa23.05■■□□□ 1.28
TPM3-206ENST00000330188 WRNQ14191 1432 aaPredicted RBP eCLIP23.01■■□□□ 1.279e-7■■■□□ 18.8
TPM3-206ENST00000330188 EEA1Q15075 1411 aa23.01■■□□□ 1.27
TPM3-206ENST00000330188 PPARGC1BQ86YN6 1023 aaKnown RBP22.96■■□□□ 1.27
TPM3-206ENST00000330188 SYNJ1O43426 1573 aa22.95■■□□□ 1.26
TPM3-206ENST00000330188 RUSC2Q8N2Y8 1516 aa22.95■■□□□ 1.26
TPM3-206ENST00000330188 CSRNP3Q8WYN3 585 aa22.89■■□□□ 1.25
TPM3-206ENST00000330188 HMGXB3Q12766 1538 aa22.87■■□□□ 1.25
TPM3-206ENST00000330188 TNIKQ9UKE5 1360 aa22.87■■□□□ 1.25
TPM3-206ENST00000330188 CEP162Q5TB80 1403 aa22.85■■□□□ 1.25
TPM3-206ENST00000330188 NCAPD3P42695 1498 aa22.84■■□□□ 1.25
TPM3-206ENST00000330188 GOLGA3Q08378 1498 aa22.79■■□□□ 1.24
TPM3-206ENST00000330188 KIF21BO75037 1637 aa22.74■■□□□ 1.23
TPM3-206ENST00000330188 TOP2BQ02880 1626 aa22.74■■□□□ 1.23
TPM3-206ENST00000330188 ZEB1P37275 1124 aaPredicted RBP22.71■■□□□ 1.23
TPM3-206ENST00000330188 CEP164Q9UPV0 1460 aa22.71■■□□□ 1.23
TPM3-206ENST00000330188 BIVM-ERCC5R4GMW8 1640 aa22.7■■□□□ 1.22
TPM3-206ENST00000330188 UBTFP17480 764 aaKnown RBP22.7■■□□□ 1.22
TPM3-206ENST00000330188 CFTRP13569 1480 aa22.57■■□□□ 1.2
TPM3-206ENST00000330188 CUX1P39880 1505 aa22.53■■□□□ 1.2
TPM3-206ENST00000330188 RAPGEF2Q9Y4G8 1499 aa22.53■■□□□ 1.2
TPM3-206ENST00000330188 PRDM2Q13029 1718 aa22.52■■□□□ 1.19
TPM3-206ENST00000330188 CLIP1P30622 1438 aa22.48■■□□□ 1.19
TPM3-206ENST00000330188 TTBK1Q5TCY1 1321 aaPredicted RBP22.44■■□□□ 1.18
TPM3-206ENST00000330188 ERICH3Q5RHP9 1530 aa22.42■■□□□ 1.18
TPM3-206ENST00000330188 PRXQ9BXM0 1461 aa22.41■■□□□ 1.18
TPM3-206ENST00000330188 CC2D2AQ9P2K1 1620 aa22.39■■□□□ 1.18
TPM3-206ENST00000330188 VPS8Q8N3P4 1428 aa22.39■■□□□ 1.17
TPM3-206ENST00000330188 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.36■■□□□ 1.17
TPM3-206ENST00000330188 KIF27Q86VH2 1401 aa22.34■■□□□ 1.17
TPM3-206ENST00000330188 CADPSQ9ULU8 1353 aa22.33■■□□□ 1.17
TPM3-206ENST00000330188 CCER1Q8TC90 406 aaPredicted RBP22.3■■□□□ 1.16
TPM3-206ENST00000330188 RANGAP1P46060 587 aaPredicted RBP22.21■■□□□ 1.15
TPM3-206ENST00000330188 ARAP1Q96P48 1450 aa22.2■■□□□ 1.14
TPM3-206ENST00000330188 CUX2O14529 1486 aa22.16■■□□□ 1.14
TPM3-206ENST00000330188 FGD5Q6ZNL6 1462 aa22.16■■□□□ 1.14
TPM3-206ENST00000330188 APLP2Q06481 763 aa22.15■■□□□ 1.14
TPM3-206ENST00000330188 FANCD2Q9BXW9 1451 aa22.13■■□□□ 1.13
TPM3-206ENST00000330188 IGF1RP08069 1367 aa22.1■■□□□ 1.13
TPM3-206ENST00000330188 ARHGAP35Q9NRY4 1499 aa22.04■■□□□ 1.12
TPM3-206ENST00000330188 DNMBPQ6XZF7 1577 aa22.04■■□□□ 1.12
TPM3-206ENST00000330188 HNRNPUL2Q1KMD3 747 aaKnown RBP22.01■■□□□ 1.11
TPM3-206ENST00000330188 NESP48681 1621 aa22■■□□□ 1.11
TPM3-206ENST00000330188 CARMIL1Q5VZK9 1371 aa22■■□□□ 1.11
TPM3-206ENST00000330188 TOPBP1Q92547 1522 aa21.98■■□□□ 1.11
TPM3-206ENST00000330188 AEBP2Q6ZN18 517 aaPredicted RBP21.95■■□□□ 1.11
TPM3-206ENST00000330188 ABCA10Q8WWZ4 1543 aa21.94■■□□□ 1.1
TPM3-206ENST00000330188 LAMC3Q9Y6N6 1575 aa21.94■■□□□ 1.1
TPM3-206ENST00000330188 POLA1P09884 1462 aaPredicted RBP21.94■■□□□ 1.1
TPM3-206ENST00000330188 KANK4Q5T7N3 995 aaPredicted RBP21.92■■□□□ 1.1
TPM3-206ENST00000330188 RAD54L2Q9Y4B4 1467 aa21.92■■□□□ 1.1
TPM3-206ENST00000330188 RRBP1Q9P2E9 1410 aaKnown RBP21.84■■□□□ 1.09
TPM3-206ENST00000330188 URB2Q14146 1524 aaKnown RBP21.84■■□□□ 1.09
TPM3-206ENST00000330188 WDR97A6NE52 1622 aa21.83■■□□□ 1.09
TPM3-206ENST00000330188 CUL7Q14999 1698 aa21.82■■□□□ 1.08
TPM3-206ENST00000330188 MAP3K1Q13233 1512 aa21.8■■□□□ 1.08
TPM3-206ENST00000330188 TIAM1Q13009 1591 aa21.79■■□□□ 1.08
TPM3-206ENST00000330188 PDS5BQ9NTI5 1447 aa21.74■■□□□ 1.07
TPM3-206ENST00000330188 CTTNBP2Q8WZ74 1663 aa21.74■■□□□ 1.07
TPM3-206ENST00000330188 DNAJC5BQ9UF47 199 aa21.73■■□□□ 1.07
TPM3-206ENST00000330188 KIF21AQ7Z4S6 1674 aa21.72■■□□□ 1.07
TPM3-206ENST00000330188 ABCA5Q8WWZ7 1642 aa21.72■■□□□ 1.07
TPM3-206ENST00000330188 DIEXFQ68CQ4 756 aaKnown RBP21.72■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 98.2 ms