Protein–RNA interactions for Protein: Q9Y5F2

PCDHB11, Protocadherin beta-11, humanhuman

Predictions only

Length 797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB11Q9Y5F2 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC24.45■■□□□ 1.5
PCDHB11Q9Y5F2 PCK2-202ENST00000396973 1830 ntTSL 1 (best) BASIC24.45■■□□□ 1.5
PCDHB11Q9Y5F2 TAF10-201ENST00000299424 1215 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
PCDHB11Q9Y5F2 MDFIC-208ENST00000614186 1068 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
PCDHB11Q9Y5F2 TCF24-201ENST00000563496 2450 ntAPPRIS P1 TSL 5 BASIC24.43■■□□□ 1.5
PCDHB11Q9Y5F2 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
PCDHB11Q9Y5F2 COPZ2-210ENST00000621465 895 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
PCDHB11Q9Y5F2 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
PCDHB11Q9Y5F2 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
PCDHB11Q9Y5F2 TMEM187-201ENST00000369982 1880 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
PCDHB11Q9Y5F2 BCAP31-201ENST00000345046 1589 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
PCDHB11Q9Y5F2 RPS2-210ENST00000530225 765 ntTSL 2 BASIC24.42■■□□□ 1.5
PCDHB11Q9Y5F2 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC24.42■■□□□ 1.5
PCDHB11Q9Y5F2 PICK1-201ENST00000356976 2055 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
PCDHB11Q9Y5F2 ZDHHC23-206ENST00000498275 2055 ntAPPRIS ALT2 TSL 2 BASIC24.41■■□□□ 1.5
PCDHB11Q9Y5F2 CDH23-208ENST00000461841 2000 ntTSL 5 BASIC24.41■■□□□ 1.5
PCDHB11Q9Y5F2 PDF-201ENST00000288022 1158 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
PCDHB11Q9Y5F2 IGFBPL1-201ENST00000377694 1093 ntAPPRIS P1 TSL 2 BASIC24.41■■□□□ 1.5
PCDHB11Q9Y5F2 BOK-AS1-201ENST00000434306 643 ntTSL 1 (best) BASIC24.41■■□□□ 1.5
PCDHB11Q9Y5F2 NTF6A-201ENST00000591175 560 ntBASIC24.41■■□□□ 1.5
PCDHB11Q9Y5F2 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC24.41■■□□□ 1.5
PCDHB11Q9Y5F2 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC24.4■■□□□ 1.5
PCDHB11Q9Y5F2 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC24.4■■□□□ 1.5
PCDHB11Q9Y5F2 CTBP1-201ENST00000290921 2297 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
PCDHB11Q9Y5F2 SERPING1-205ENST00000403558 2231 ntTSL 5 BASIC24.39■■□□□ 1.5
PCDHB11Q9Y5F2 LINC01918-201ENST00000436841 797 ntTSL 2 BASIC24.39■■□□□ 1.49
PCDHB11Q9Y5F2 AC012354.3-201ENST00000623734 483 ntBASIC24.39■■□□□ 1.49
PCDHB11Q9Y5F2 TSR3-201ENST00000007390 1243 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.49
PCDHB11Q9Y5F2 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC24.39■■□□□ 1.49
PCDHB11Q9Y5F2 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.49
PCDHB11Q9Y5F2 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.49
PCDHB11Q9Y5F2 SENP3-201ENST00000321337 2611 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.49
PCDHB11Q9Y5F2 MDFIC-203ENST00000423503 474 ntTSL 1 (best) BASIC24.38■■□□□ 1.49
PCDHB11Q9Y5F2 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC24.38■■□□□ 1.49
PCDHB11Q9Y5F2 CADPS-215ENST00000490353 2669 ntTSL 5 BASIC24.37■■□□□ 1.49
PCDHB11Q9Y5F2 KIF13A-207ENST00000502704 1330 ntTSL 1 (best) BASIC24.36■■□□□ 1.49
PCDHB11Q9Y5F2 ARHGEF7-205ENST00000375739 5375 ntTSL 1 (best) BASIC24.36■■□□□ 1.49
PCDHB11Q9Y5F2 MFSD12-202ENST00000389395 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC24.36■■□□□ 1.49
PCDHB11Q9Y5F2 LSM7-201ENST00000252622 529 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
PCDHB11Q9Y5F2 CHST11-203ENST00000547956 936 ntTSL 2 BASIC24.36■■□□□ 1.49
PCDHB11Q9Y5F2 AC078883.1-202ENST00000450443 1397 ntTSL 3 BASIC24.36■■□□□ 1.49
PCDHB11Q9Y5F2 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC24.36■■□□□ 1.49
PCDHB11Q9Y5F2 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC24.36■■□□□ 1.49
PCDHB11Q9Y5F2 HYAL2-202ENST00000395139 2136 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
PCDHB11Q9Y5F2 C11orf80-218ENST00000540737 1786 ntAPPRIS ALT2 TSL 2 BASIC24.35■■□□□ 1.49
PCDHB11Q9Y5F2 ADGRB2-204ENST00000398542 5176 ntTSL 5 BASIC24.35■■□□□ 1.49
PCDHB11Q9Y5F2 SCCPDH-201ENST00000366510 2503 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
PCDHB11Q9Y5F2 MFSD12-201ENST00000355415 2124 ntAPPRIS P3 TSL 1 (best) BASIC24.35■■□□□ 1.49
PCDHB11Q9Y5F2 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
PCDHB11Q9Y5F2 GPR25-201ENST00000304244 1224 ntAPPRIS P1 BASIC24.34■■□□□ 1.49
PCDHB11Q9Y5F2 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
PCDHB11Q9Y5F2 NPDC1-201ENST00000371600 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC24.33■■□□□ 1.49
PCDHB11Q9Y5F2 CCDC61-204ENST00000595358 1817 ntAPPRIS P2 TSL 5 BASIC24.33■■□□□ 1.49
PCDHB11Q9Y5F2 PLEKHF1-201ENST00000436066 2084 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
PCDHB11Q9Y5F2 PXMP2-201ENST00000317479 957 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
PCDHB11Q9Y5F2 TNFRSF4-201ENST00000379236 1068 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
PCDHB11Q9Y5F2 AC148477.6-201ENST00000623746 465 ntBASIC24.33■■□□□ 1.49
PCDHB11Q9Y5F2 HAND2-201ENST00000359562 2780 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
PCDHB11Q9Y5F2 AC018358.1-201ENST00000631079 1402 ntBASIC24.33■■□□□ 1.49
PCDHB11Q9Y5F2 SV2B-203ENST00000545111 2099 ntTSL 2 BASIC24.33■■□□□ 1.48
PCDHB11Q9Y5F2 CAPNS1-204ENST00000587718 1558 ntAPPRIS ALT2 TSL 1 (best) BASIC24.33■■□□□ 1.48
PCDHB11Q9Y5F2 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
PCDHB11Q9Y5F2 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC24.31■■□□□ 1.48
PCDHB11Q9Y5F2 PURG-201ENST00000339382 2693 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
PCDHB11Q9Y5F2 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
PCDHB11Q9Y5F2 ABHD17C-202ENST00000558464 1976 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
PCDHB11Q9Y5F2 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
PCDHB11Q9Y5F2 C17orf97-201ENST00000360127 1839 ntAPPRIS P2 TSL 1 (best) BASIC24.29■■□□□ 1.48
PCDHB11Q9Y5F2 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC24.29■■□□□ 1.48
PCDHB11Q9Y5F2 TMEM114-202ENST00000568335 899 ntTSL 3 BASIC24.29■■□□□ 1.48
PCDHB11Q9Y5F2 NPB-202ENST00000573081 2154 ntAPPRIS ALT2 BASIC24.29■■□□□ 1.48
PCDHB11Q9Y5F2 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC24.28■■□□□ 1.48
PCDHB11Q9Y5F2 G6PC3-201ENST00000269097 1533 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
PCDHB11Q9Y5F2 LACTBL1-202ENST00000618559 1500 ntAPPRIS ALT2 TSL 5 BASIC24.28■■□□□ 1.48
PCDHB11Q9Y5F2 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC24.26■■□□□ 1.47
PCDHB11Q9Y5F2 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC24.26■■□□□ 1.47
PCDHB11Q9Y5F2 TMEM55B-201ENST00000250489 1961 ntAPPRIS P3 TSL 1 (best) BASIC24.26■■□□□ 1.47
PCDHB11Q9Y5F2 TNIP2-201ENST00000315423 1974 ntAPPRIS P3 TSL 1 (best) BASIC24.26■■□□□ 1.47
PCDHB11Q9Y5F2 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC24.26■■□□□ 1.47
PCDHB11Q9Y5F2 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
PCDHB11Q9Y5F2 SPATA33-209ENST00000579310 1490 ntAPPRIS ALT2 TSL 2 BASIC24.26■■□□□ 1.47
PCDHB11Q9Y5F2 ZNF219-201ENST00000360947 3071 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
PCDHB11Q9Y5F2 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC24.25■■□□□ 1.47
PCDHB11Q9Y5F2 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
PCDHB11Q9Y5F2 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
PCDHB11Q9Y5F2 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC24.25■■□□□ 1.47
PCDHB11Q9Y5F2 KCTD15-206ENST00000588881 1211 ntAPPRIS P1 TSL 2 BASIC24.24■■□□□ 1.47
PCDHB11Q9Y5F2 ATOH7-201ENST00000373673 1480 ntAPPRIS P1 BASIC24.24■■□□□ 1.47
PCDHB11Q9Y5F2 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC24.24■■□□□ 1.47
PCDHB11Q9Y5F2 NTN3-201ENST00000293973 1986 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
PCDHB11Q9Y5F2 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC24.23■■□□□ 1.47
PCDHB11Q9Y5F2 PLEKHF2-202ENST00000519516 1144 ntAPPRIS P1 TSL 3 BASIC24.23■■□□□ 1.47
PCDHB11Q9Y5F2 MIR219A2-201ENST00000608502 1504 ntBASIC24.23■■□□□ 1.47
PCDHB11Q9Y5F2 LINC01003-201ENST00000564834 1764 ntBASIC24.23■■□□□ 1.47
PCDHB11Q9Y5F2 ROM1-201ENST00000278833 1878 ntAPPRIS P2 TSL 1 (best) BASIC24.23■■□□□ 1.47
PCDHB11Q9Y5F2 THRA-204ENST00000546243 1909 ntAPPRIS P1 TSL 2 BASIC24.23■■□□□ 1.47
PCDHB11Q9Y5F2 RHEB-201ENST00000262187 2075 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
PCDHB11Q9Y5F2 C11orf80-204ENST00000525908 2135 ntAPPRIS P3 TSL 2 BASIC24.23■■□□□ 1.47
PCDHB11Q9Y5F2 VEGFC-202ENST00000618562 2064 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
PCDHB11Q9Y5F2 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC24.22■■□□□ 1.47
Retrieved 100 of 98,524 protein–RNA pairs in 17.5 ms