Protein–RNA interactions for Protein: Q9Y566

SHANK1, SH3 and multiple ankyrin repeat domains protein 1, humanhuman

Predictions only

Length 2,161 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1Q9Y566 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC22.78■■□□□ 1.24
SHANK1Q9Y566 FAHD1-204ENST00000615972 757 ntTSL 5 BASIC22.78■■□□□ 1.24
SHANK1Q9Y566 SLC16A11-201ENST00000308009 1803 ntAPPRIS P2 TSL 1 (best) BASIC22.77■■□□□ 1.24
SHANK1Q9Y566 TPM2-203ENST00000378292 2147 ntAPPRIS ALT1 TSL 1 (best) BASIC22.77■■□□□ 1.24
SHANK1Q9Y566 KCNG2-201ENST00000316249 1401 ntAPPRIS P1 TSL 1 (best) BASIC22.77■■□□□ 1.24
SHANK1Q9Y566 WBP1-202ENST00000393972 1325 ntTSL 2 BASIC22.77■■□□□ 1.24
SHANK1Q9Y566 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC22.77■■□□□ 1.24
SHANK1Q9Y566 ADAMTS13-203ENST00000371910 1074 ntTSL 1 (best) BASIC22.77■■□□□ 1.24
SHANK1Q9Y566 IL17D-201ENST00000304920 1861 ntAPPRIS P1 TSL 1 (best) BASIC22.77■■□□□ 1.23
SHANK1Q9Y566 DHRS13-203ENST00000426464 1569 ntTSL 2 BASIC22.76■■□□□ 1.23
SHANK1Q9Y566 LY6H-201ENST00000342752 951 ntAPPRIS ALT2 TSL 1 (best) BASIC22.76■■□□□ 1.23
SHANK1Q9Y566 LY6H-202ENST00000414417 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC22.76■■□□□ 1.23
SHANK1Q9Y566 LY6H-203ENST00000430474 925 ntAPPRIS P3 TSL 3 BASIC22.76■■□□□ 1.23
SHANK1Q9Y566 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC22.76■■□□□ 1.23
SHANK1Q9Y566 AC025884.2-201ENST00000553429 711 ntBASIC22.76■■□□□ 1.23
SHANK1Q9Y566 MEST-211ENST00000437945 1455 ntTSL 5 BASIC22.76■■□□□ 1.23
SHANK1Q9Y566 MKRN1-202ENST00000443720 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC22.76■■□□□ 1.23
SHANK1Q9Y566 SLC16A8-201ENST00000320521 1878 ntAPPRIS P1 TSL 1 (best) BASIC22.76■■□□□ 1.23
SHANK1Q9Y566 DUX4L9-201ENST00000449051 1259 ntBASIC22.75■■□□□ 1.23
SHANK1Q9Y566 MORF4L1-203ENST00000426013 1880 ntAPPRIS P1 TSL 1 (best) BASIC22.75■■□□□ 1.23
SHANK1Q9Y566 WDR86-204ENST00000477459 1428 ntTSL 2 BASIC22.75■■□□□ 1.23
SHANK1Q9Y566 FEZ1-201ENST00000278919 1748 ntAPPRIS P1 TSL 1 (best) BASIC22.75■■□□□ 1.23
SHANK1Q9Y566 ST6GALNAC6-203ENST00000373142 2448 ntTSL 1 (best) BASIC22.75■■□□□ 1.23
SHANK1Q9Y566 TMEM150A-202ENST00000334462 1518 ntAPPRIS P1 TSL 1 (best) BASIC22.75■■□□□ 1.23
SHANK1Q9Y566 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC22.74■■□□□ 1.23
SHANK1Q9Y566 MTURN-203ENST00000409688 843 ntTSL 2 BASIC22.74■■□□□ 1.23
SHANK1Q9Y566 HOXD13-201ENST00000392539 2240 ntAPPRIS P1 TSL 1 (best) BASIC22.74■■□□□ 1.23
SHANK1Q9Y566 ACOT7-201ENST00000361521 2429 ntAPPRIS ALT2 TSL 1 (best) BASIC22.73■■□□□ 1.23
SHANK1Q9Y566 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC22.73■■□□□ 1.23
SHANK1Q9Y566 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC22.73■■□□□ 1.23
SHANK1Q9Y566 IGFBP7-201ENST00000295666 1427 ntAPPRIS P3 TSL 1 (best) BASIC22.73■■□□□ 1.23
SHANK1Q9Y566 MATK-201ENST00000310132 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC22.73■■□□□ 1.23
SHANK1Q9Y566 UBE2E3-213ENST00000602959 909 ntAPPRIS P1 TSL 5 BASIC22.73■■□□□ 1.23
SHANK1Q9Y566 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC22.73■■□□□ 1.23
SHANK1Q9Y566 EFNA1-202ENST00000368407 1926 ntAPPRIS P1 TSL 1 (best) BASIC22.73■■□□□ 1.23
SHANK1Q9Y566 DEXI-202ENST00000469379 1393 ntAPPRIS P1 TSL 2 BASIC22.72■■□□□ 1.23
SHANK1Q9Y566 ABHD17B-202ENST00000377041 1312 ntAPPRIS P4 TSL 1 (best) BASIC22.72■■□□□ 1.23
SHANK1Q9Y566 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC22.71■■□□□ 1.23
SHANK1Q9Y566 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC22.71■■□□□ 1.23
SHANK1Q9Y566 TYMP-201ENST00000252029 1630 ntAPPRIS P3 TSL 1 (best) BASIC22.71■■□□□ 1.23
SHANK1Q9Y566 RCC1L-202ENST00000614461 2419 ntTSL 1 (best) BASIC22.71■■□□□ 1.23
SHANK1Q9Y566 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC22.7■■□□□ 1.23
SHANK1Q9Y566 AC104002.3-202ENST00000557170 1100 ntTSL 3 BASIC22.7■■□□□ 1.23
SHANK1Q9Y566 RAP2CP1-202ENST00000605179 643 ntBASIC22.7■■□□□ 1.23
SHANK1Q9Y566 FGFRL1-205ENST00000510644 2304 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
SHANK1Q9Y566 ITPKA-201ENST00000260386 1824 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
SHANK1Q9Y566 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC22.7■■□□□ 1.22
SHANK1Q9Y566 ZFAND2B-201ENST00000289528 1314 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
SHANK1Q9Y566 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC22.7■■□□□ 1.22
SHANK1Q9Y566 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC22.7■■□□□ 1.22
SHANK1Q9Y566 IRX1-201ENST00000302006 1858 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
SHANK1Q9Y566 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC22.7■■□□□ 1.22
SHANK1Q9Y566 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
SHANK1Q9Y566 PLA2G10-201ENST00000438167 1000 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
SHANK1Q9Y566 RNF130-205ENST00000521389 2263 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
SHANK1Q9Y566 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC22.68■■□□□ 1.22
SHANK1Q9Y566 AC010907.1-201ENST00000441632 807 ntTSL 3 BASIC22.68■■□□□ 1.22
SHANK1Q9Y566 AC093536.1-201ENST00000569153 554 ntBASIC22.68■■□□□ 1.22
SHANK1Q9Y566 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC22.68■■□□□ 1.22
SHANK1Q9Y566 AC131212.1-201ENST00000613771 668 ntBASIC22.67■■□□□ 1.22
SHANK1Q9Y566 CCZ1B-215ENST00000626257 2211 ntTSL 2 BASIC22.67■■□□□ 1.22
SHANK1Q9Y566 RPUSD1-208ENST00000567114 1835 ntTSL 2 BASIC22.67■■□□□ 1.22
SHANK1Q9Y566 HOXD8-201ENST00000313173 1917 ntAPPRIS P3 TSL 2 BASIC22.67■■□□□ 1.22
SHANK1Q9Y566 CUEDC1-201ENST00000360238 2193 ntAPPRIS P1 TSL 2 BASIC22.67■■□□□ 1.22
SHANK1Q9Y566 SLC25A23-203ENST00000334510 1424 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
SHANK1Q9Y566 SPCS2P3-201ENST00000500401 656 ntBASIC22.66■■□□□ 1.22
SHANK1Q9Y566 EMC10-206ENST00000598585 1610 ntAPPRIS ALT2 TSL 5 BASIC22.66■■□□□ 1.22
SHANK1Q9Y566 SDF2L1-201ENST00000248958 865 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
SHANK1Q9Y566 BEX3-202ENST00000372634 753 ntTSL 2 BASIC22.66■■□□□ 1.22
SHANK1Q9Y566 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
SHANK1Q9Y566 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC22.65■■□□□ 1.22
SHANK1Q9Y566 AC116025.2-201ENST00000576632 443 ntTSL 3 BASIC22.65■■□□□ 1.22
SHANK1Q9Y566 AC139426.1-201ENST00000568218 2529 ntBASIC22.65■■□□□ 1.22
SHANK1Q9Y566 RUNX2-205ENST00000465038 1770 ntAPPRIS P4 TSL 5 BASIC22.65■■□□□ 1.22
SHANK1Q9Y566 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC22.65■■□□□ 1.22
SHANK1Q9Y566 AGAP3-216ENST00000479901 1881 ntTSL 5 BASIC22.65■■□□□ 1.22
SHANK1Q9Y566 PSMG4-206ENST00000438998 838 ntAPPRIS P1 TSL 2 BASIC22.65■■□□□ 1.22
SHANK1Q9Y566 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC22.65■■□□□ 1.22
SHANK1Q9Y566 PPP4C-201ENST00000279387 1407 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.22
SHANK1Q9Y566 ABCB10P3-201ENST00000561950 2166 ntBASIC22.64■■□□□ 1.22
SHANK1Q9Y566 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC22.64■■□□□ 1.22
SHANK1Q9Y566 MRPL4-201ENST00000253099 1455 ntAPPRIS P2 TSL 1 (best) BASIC22.64■■□□□ 1.21
SHANK1Q9Y566 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
SHANK1Q9Y566 AC055876.1-201ENST00000430589 895 ntTSL 2 BASIC22.63■■□□□ 1.21
SHANK1Q9Y566 RTN2-201ENST00000245923 2293 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
SHANK1Q9Y566 CTAG1B-201ENST00000328435 748 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
SHANK1Q9Y566 CTAG1A-202ENST00000599837 748 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
SHANK1Q9Y566 AC026202.3-201ENST00000600805 1127 ntBASIC22.63■■□□□ 1.21
SHANK1Q9Y566 ANKRD13D-211ENST00000511455 2139 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
SHANK1Q9Y566 SMPD5-203ENST00000639008 1464 ntBASIC22.63■■□□□ 1.21
SHANK1Q9Y566 HES6-204ENST00000409182 863 ntTSL 2 BASIC22.62■■□□□ 1.21
SHANK1Q9Y566 CCND3-205ENST00000415497 1843 ntTSL 2 BASIC22.62■■□□□ 1.21
SHANK1Q9Y566 CIB2-201ENST00000258930 1598 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
SHANK1Q9Y566 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC22.62■■□□□ 1.21
SHANK1Q9Y566 PRELID2-207ENST00000511435 1894 ntAPPRIS ALT1 TSL 2 BASIC22.61■■□□□ 1.21
SHANK1Q9Y566 CIB2-202ENST00000539011 1511 ntTSL 1 (best) BASIC22.61■■□□□ 1.21
SHANK1Q9Y566 GUSBP5-201ENST00000418136 578 ntBASIC22.61■■□□□ 1.21
SHANK1Q9Y566 AC010980.1-201ENST00000587192 1142 ntBASIC22.6■■□□□ 1.21
SHANK1Q9Y566 PKIG-205ENST00000372891 1443 ntAPPRIS P1 TSL 2 BASIC22.6■■□□□ 1.21
SHANK1Q9Y566 PVT1_1.1-201ENST00000615125 194 ntBASIC22.6■■□□□ 1.21
Retrieved 100 of 98,524 protein–RNA pairs in 40.8 ms