Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
CLRN1P58418 ZNF768-201ENST00000380412 2315 ntAPPRIS P2 TSL 1 (best) BASIC22.21■■□□□ 1.15
CLRN1P58418 FADD-201ENST00000301838 1841 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
CLRN1P58418 CAMKK1-201ENST00000158166 2459 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
CLRN1P58418 PIK3R2-207ENST00000617130 2187 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
CLRN1P58418 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC22.2■■□□□ 1.14
CLRN1P58418 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC22.2■■□□□ 1.14
CLRN1P58418 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
CLRN1P58418 IGFBPL1-201ENST00000377694 1093 ntAPPRIS P1 TSL 2 BASIC22.2■■□□□ 1.14
CLRN1P58418 HES6-205ENST00000409356 528 ntTSL 2 BASIC22.2■■□□□ 1.14
CLRN1P58418 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC22.2■■□□□ 1.14
CLRN1P58418 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC22.2■■□□□ 1.14
CLRN1P58418 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
CLRN1P58418 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
CLRN1P58418 NAPA-201ENST00000263354 1839 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
CLRN1P58418 FRAT2-201ENST00000371019 2213 ntAPPRIS P1 BASIC22.19■■□□□ 1.14
CLRN1P58418 RNF19B-201ENST00000235150 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC22.19■■□□□ 1.14
CLRN1P58418 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
CLRN1P58418 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
CLRN1P58418 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
CLRN1P58418 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
CLRN1P58418 AC008813.1-201ENST00000536597 885 ntBASIC22.18■■□□□ 1.14
CLRN1P58418 RAB40C-204ENST00000538492 2569 ntAPPRIS P1 TSL 2 BASIC22.17■■□□□ 1.14
CLRN1P58418 C11orf80-204ENST00000525908 2135 ntAPPRIS P3 TSL 2 BASIC22.17■■□□□ 1.14
CLRN1P58418 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC22.17■■□□□ 1.14
CLRN1P58418 EMID1-202ENST00000404755 2049 ntTSL 5 BASIC22.17■■□□□ 1.14
CLRN1P58418 G6PC3-201ENST00000269097 1533 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
CLRN1P58418 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC22.16■■□□□ 1.14
CLRN1P58418 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
CLRN1P58418 HDGF-201ENST00000357325 2380 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
CLRN1P58418 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
CLRN1P58418 SURF1-201ENST00000371974 1093 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
CLRN1P58418 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
CLRN1P58418 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
CLRN1P58418 PHF23-205ENST00000571362 1768 ntTSL 2 BASIC22.15■■□□□ 1.14
CLRN1P58418 SNTB1-202ENST00000517992 2273 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.14
CLRN1P58418 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC22.14■■□□□ 1.13
CLRN1P58418 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC22.14■■□□□ 1.13
CLRN1P58418 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC22.14■■□□□ 1.13
CLRN1P58418 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC22.14■■□□□ 1.13
CLRN1P58418 TANGO2-214ENST00000447208 2086 ntTSL 3 BASIC22.14■■□□□ 1.13
CLRN1P58418 ZNF219-201ENST00000360947 3071 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
CLRN1P58418 CYB5R3-201ENST00000352397 2124 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
CLRN1P58418 KCNJ4-201ENST00000303592 2065 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
CLRN1P58418 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
CLRN1P58418 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC22.13■■□□□ 1.13
CLRN1P58418 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC22.13■■□□□ 1.13
CLRN1P58418 CR559946.2-201ENST00000623684 991 ntBASIC22.13■■□□□ 1.13
CLRN1P58418 SPATA33-209ENST00000579310 1490 ntAPPRIS ALT2 TSL 2 BASIC22.13■■□□□ 1.13
CLRN1P58418 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC22.13■■□□□ 1.13
CLRN1P58418 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
CLRN1P58418 PWWP2B-201ENST00000305233 2651 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
CLRN1P58418 MEN1-204ENST00000377313 1871 ntAPPRIS P3 TSL 2 BASIC22.12■■□□□ 1.13
CLRN1P58418 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC22.12■■□□□ 1.13
CLRN1P58418 TIGD3-201ENST00000309880 2012 ntAPPRIS P1 TSL 2 BASIC22.11■■□□□ 1.13
CLRN1P58418 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC22.11■■□□□ 1.13
CLRN1P58418 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC22.11■■□□□ 1.13
CLRN1P58418 MIR7108-201ENST00000614319 87 ntBASIC22.11■■□□□ 1.13
CLRN1P58418 GDI1-215ENST00000630693 786 ntTSL 4 BASIC22.11■■□□□ 1.13
CLRN1P58418 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC22.11■■□□□ 1.13
CLRN1P58418 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC22.11■■□□□ 1.13
CLRN1P58418 LACTBL1-202ENST00000618559 1500 ntAPPRIS ALT2 TSL 5 BASIC22.11■■□□□ 1.13
CLRN1P58418 CADPS-215ENST00000490353 2669 ntTSL 5 BASIC22.1■■□□□ 1.13
CLRN1P58418 MRAP2-201ENST00000257776 2153 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
CLRN1P58418 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
CLRN1P58418 FLJ37453-201ENST00000317122 2473 ntTSL 2 BASIC22.1■■□□□ 1.13
CLRN1P58418 POU3F3-201ENST00000361360 3064 ntAPPRIS P1 BASIC22.1■■□□□ 1.13
CLRN1P58418 MACF1-219ENST00000484793 834 ntTSL 2 BASIC22.1■■□□□ 1.13
CLRN1P58418 MIR3648-2-201ENST00000581792 180 ntBASIC22.1■■□□□ 1.13
CLRN1P58418 MIR3648-1-201ENST00000615959 180 ntBASIC22.1■■□□□ 1.13
CLRN1P58418 VSIG8-201ENST00000368100 1818 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
CLRN1P58418 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC22.09■■□□□ 1.13
CLRN1P58418 CCKBR-201ENST00000334619 2121 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
CLRN1P58418 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
CLRN1P58418 ARPC2-202ENST00000315717 1505 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
CLRN1P58418 WHAMMP3-201ENST00000611636 1609 ntBASIC22.09■■□□□ 1.13
CLRN1P58418 TXNRD2-205ENST00000400525 1874 ntTSL 5 BASIC22.09■■□□□ 1.13
CLRN1P58418 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC22.09■■□□□ 1.13
CLRN1P58418 RCOR3-202ENST00000367006 2525 ntTSL 1 (best) BASIC22.08■■□□□ 1.13
CLRN1P58418 PKM-203ENST00000389093 2279 ntTSL 5 BASIC22.08■■□□□ 1.13
CLRN1P58418 LINC01896-206ENST00000575722 1256 ntTSL 2 BASIC22.08■■□□□ 1.13
CLRN1P58418 AL449106.1-201ENST00000608517 1980 ntBASIC22.08■■□□□ 1.12
CLRN1P58418 PURG-201ENST00000339382 2693 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
CLRN1P58418 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC22.07■■□□□ 1.12
CLRN1P58418 MIR219A2-201ENST00000608502 1504 ntBASIC22.06■■□□□ 1.12
CLRN1P58418 HLA-V-202ENST00000446817 847 ntBASIC22.06■■□□□ 1.12
CLRN1P58418 AC016575.1-201ENST00000607026 382 ntBASIC22.06■■□□□ 1.12
CLRN1P58418 COPZ2-210ENST00000621465 895 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
CLRN1P58418 AC148477.6-201ENST00000623746 465 ntBASIC22.06■■□□□ 1.12
CLRN1P58418 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC22.06■■□□□ 1.12
CLRN1P58418 FAM107B-205ENST00000378467 2374 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
CLRN1P58418 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
CLRN1P58418 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC22.06■■□□□ 1.12
CLRN1P58418 CHST11-203ENST00000547956 936 ntTSL 2 BASIC22.05■■□□□ 1.12
CLRN1P58418 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
CLRN1P58418 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
CLRN1P58418 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
CLRN1P58418 SOWAHD-201ENST00000343905 1552 ntAPPRIS P1 BASIC22.04■■□□□ 1.12
CLRN1P58418 DHRS13-203ENST00000426464 1569 ntTSL 2 BASIC22.04■■□□□ 1.12
CLRN1P58418 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC22.04■■□□□ 1.12
Retrieved 100 of 98,524 protein–RNA pairs in 30.6 ms