Protein–RNA interactions for Protein: O00337

SLC28A1, Sodium/nucleoside cotransporter 1, humanhuman

Predictions only

Length 649 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC28A1O00337 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC23.99■■□□□ 1.43
SLC28A1O00337 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC23.99■■□□□ 1.43
SLC28A1O00337 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC23.99■■□□□ 1.43
SLC28A1O00337 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC23.98■■□□□ 1.43
SLC28A1O00337 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC23.98■■□□□ 1.43
SLC28A1O00337 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC23.98■■□□□ 1.43
SLC28A1O00337 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC23.98■■□□□ 1.43
SLC28A1O00337 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC23.98■■□□□ 1.43
SLC28A1O00337 ZFPM1-201ENST00000319555 5380 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
SLC28A1O00337 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC23.97■■□□□ 1.43
SLC28A1O00337 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC23.96■■□□□ 1.43
SLC28A1O00337 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.43
SLC28A1O00337 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC23.95■■□□□ 1.42
SLC28A1O00337 AC091060.1-201ENST00000623524 1766 ntBASIC23.95■■□□□ 1.42
SLC28A1O00337 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
SLC28A1O00337 AL449106.1-201ENST00000608517 1980 ntBASIC23.94■■□□□ 1.42
SLC28A1O00337 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
SLC28A1O00337 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
SLC28A1O00337 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC23.93■■□□□ 1.42
SLC28A1O00337 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC23.93■■□□□ 1.42
SLC28A1O00337 TAZ-205ENST00000475699 1862 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
SLC28A1O00337 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC23.92■■□□□ 1.42
SLC28A1O00337 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
SLC28A1O00337 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC23.92■■□□□ 1.42
SLC28A1O00337 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
SLC28A1O00337 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC23.92■■□□□ 1.42
SLC28A1O00337 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC23.92■■□□□ 1.42
SLC28A1O00337 PLBD2-202ENST00000545182 2321 ntTSL 2 BASIC23.92■■□□□ 1.42
SLC28A1O00337 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC23.91■■□□□ 1.42
SLC28A1O00337 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC23.91■■□□□ 1.42
SLC28A1O00337 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
SLC28A1O00337 AP004609.3-201ENST00000610705 1884 ntBASIC23.91■■□□□ 1.42
SLC28A1O00337 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC23.91■■□□□ 1.42
SLC28A1O00337 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC23.89■■□□□ 1.42
SLC28A1O00337 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC23.89■■□□□ 1.42
SLC28A1O00337 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.41
SLC28A1O00337 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC23.89■■□□□ 1.41
SLC28A1O00337 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.41
SLC28A1O00337 ARMC10-205ENST00000428183 2445 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
SLC28A1O00337 POU2F2-208ENST00000529952 1716 ntAPPRIS ALT2 TSL 1 (best) BASIC23.87■■□□□ 1.41
SLC28A1O00337 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC23.87■■□□□ 1.41
SLC28A1O00337 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
SLC28A1O00337 WHAMMP3-201ENST00000611636 1609 ntBASIC23.86■■□□□ 1.41
SLC28A1O00337 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC23.86■■□□□ 1.41
SLC28A1O00337 RPS2-210ENST00000530225 765 ntTSL 2 BASIC23.86■■□□□ 1.41
SLC28A1O00337 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
SLC28A1O00337 OTUD5-202ENST00000376488 2692 ntAPPRIS ALT1 TSL 1 (best) BASIC23.86■■□□□ 1.41
SLC28A1O00337 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC23.85■■□□□ 1.41
SLC28A1O00337 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
SLC28A1O00337 HECA-201ENST00000367658 5614 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
SLC28A1O00337 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC23.85■■□□□ 1.41
SLC28A1O00337 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
SLC28A1O00337 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
SLC28A1O00337 AC145676.1-201ENST00000514988 2004 ntBASIC23.84■■□□□ 1.41
SLC28A1O00337 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC23.84■■□□□ 1.41
SLC28A1O00337 BCL7C-202ENST00000380317 2409 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
SLC28A1O00337 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
SLC28A1O00337 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC23.83■■□□□ 1.41
SLC28A1O00337 AC142472.1-201ENST00000612013 1741 ntBASIC23.83■■□□□ 1.41
SLC28A1O00337 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC23.83■■□□□ 1.4
SLC28A1O00337 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC23.83■■□□□ 1.4
SLC28A1O00337 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC23.82■■□□□ 1.4
SLC28A1O00337 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC23.82■■□□□ 1.4
SLC28A1O00337 GPR150-201ENST00000380007 2065 ntAPPRIS P1 BASIC23.82■■□□□ 1.4
SLC28A1O00337 SLC35A2-207ENST00000445167 1739 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
SLC28A1O00337 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC23.82■■□□□ 1.4
SLC28A1O00337 PTPA-202ENST00000347048 1989 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
SLC28A1O00337 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
SLC28A1O00337 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
SLC28A1O00337 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
SLC28A1O00337 MXI1-201ENST00000239007 2424 ntAPPRIS ALT1 TSL 1 (best) BASIC23.81■■□□□ 1.4
SLC28A1O00337 HGH1-207ENST00000628266 258 ntTSL 5 BASIC23.8■■□□□ 1.4
SLC28A1O00337 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC23.8■■□□□ 1.4
SLC28A1O00337 SPTSSA-201ENST00000298130 2777 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
SLC28A1O00337 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC23.8■■□□□ 1.4
SLC28A1O00337 CHML-204ENST00000638121 920 ntTSL 2 BASIC23.79■■□□□ 1.4
SLC28A1O00337 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC23.79■■□□□ 1.4
SLC28A1O00337 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC23.78■■□□□ 1.4
SLC28A1O00337 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC23.78■■□□□ 1.4
SLC28A1O00337 TMEM185A-207ENST00000600449 2840 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
SLC28A1O00337 OSBP-201ENST00000263847 5083 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
SLC28A1O00337 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC23.77■■□□□ 1.4
SLC28A1O00337 LINC01971-201ENST00000617888 1048 ntBASIC23.77■■□□□ 1.4
SLC28A1O00337 AC092803.2-201ENST00000564287 1899 ntBASIC23.77■■□□□ 1.4
SLC28A1O00337 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
SLC28A1O00337 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
SLC28A1O00337 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC23.75■■□□□ 1.39
SLC28A1O00337 RPS2P35-201ENST00000443417 897 ntBASIC23.75■■□□□ 1.39
SLC28A1O00337 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC23.75■■□□□ 1.39
SLC28A1O00337 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
SLC28A1O00337 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
SLC28A1O00337 ANKRD53-201ENST00000272421 2185 ntAPPRIS P3 TSL 1 (best) BASIC23.75■■□□□ 1.39
SLC28A1O00337 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
SLC28A1O00337 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
SLC28A1O00337 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
SLC28A1O00337 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
SLC28A1O00337 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC23.74■■□□□ 1.39
SLC28A1O00337 DUSP8P4-201ENST00000399538 1761 ntBASIC23.73■■□□□ 1.39
SLC28A1O00337 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC23.73■■□□□ 1.39
SLC28A1O00337 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
Retrieved 100 of 98,524 protein–RNA pairs in 16.4 ms