Protein–RNA interactions for Protein: Q01081

U2AF1, Splicing factor U2AF 35 kDa subunit, humanhuman

Known RBP eCLIP

Length 240 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
U2AF1Q01081 KRIT1-205ENST00000412043 3378 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.096e-7■□□□□ 8.1
U2AF1Q01081 GLYR1-201ENST00000321919 3772 ntAPPRIS P3 TSL 1 (best) BASIC15.58■□□□□ 0.096e-7■□□□□ 8.1
U2AF1Q01081 KRIT1-212ENST00000440209 557 ntTSL 415.33■□□□□ 0.046e-7■□□□□ 8.1
U2AF1Q01081 KRIT1-201ENST00000340022 4553 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.016e-7■□□□□ 8.1
U2AF1Q01081 GLYR1-202ENST00000436648 3466 ntTSL 2 BASIC14.97□□□□□ -0.016e-7■□□□□ 8.1
U2AF1Q01081 GLYR1-210ENST00000589389 3606 ntTSL 1 (best)14.4□□□□□ -0.16e-7■□□□□ 8.1
U2AF1Q01081 KRIT1-213ENST00000444960 783 ntTSL 413.65□□□□□ -0.226e-7■□□□□ 8.1
U2AF1Q01081 GLYR1-209ENST00000588732 3527 ntTSL 1 (best)12.89□□□□□ -0.356e-7■□□□□ 8.1
U2AF1Q01081 KRIT1-206ENST00000413688 551 ntTSL 412.55□□□□□ -0.46e-7■□□□□ 8.1
U2AF1Q01081 KRIT1-216ENST00000454017 978 ntTSL 312.55□□□□□ -0.46e-7■□□□□ 8.1
U2AF1Q01081 KRIT1-202ENST00000394503 2827 ntTSL 2 BASIC12.5□□□□□ -0.416e-7■□□□□ 8.1
U2AF1Q01081 KRIT1-208ENST00000425073 546 ntTSL 412.06□□□□□ -0.486e-7■□□□□ 8.1
U2AF1Q01081 KRIT1-204ENST00000394507 4762 ntAPPRIS P1 TSL 5 BASIC11.57□□□□□ -0.566e-7■□□□□ 8.1
U2AF1Q01081 TMEM248-206ENST00000484751 739 ntTSL 211.08□□□□□ -0.646e-7■□□□□ 8.1
U2AF1Q01081 KRIT1-203ENST00000394505 3143 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.86e-7■□□□□ 8.1
U2AF1Q01081 RPS6KC1-203ENST00000468069 784 ntTSL 37.39□□□□□ -1.236e-7■□□□□ 8.1
U2AF1Q01081 KRIT1-207ENST00000422347 483 ntTSL 56.55□□□□□ -1.366e-7■□□□□ 8.1
U2AF1Q01081 KRIT1-209ENST00000425919 572 ntTSL 56.55□□□□□ -1.366e-7■□□□□ 8.1
U2AF1Q01081 KRIT1-218ENST00000458493 507 ntTSL 46.27□□□□□ -1.416e-7■□□□□ 8.1
U2AF1Q01081 RPS6KC1-204ENST00000490299 5154 ntTSL 1 (best)4.55□□□□□ -1.686e-7■□□□□ 8.1
U2AF1Q01081 FTCD-202ENST00000397743 1834 ntTSL 1 (best) BASIC35.99■■■■□ 3.356e-8■□□□□ 8.1
U2AF1Q01081 FTCD-203ENST00000397746 1878 ntAPPRIS P1 TSL 1 (best) BASIC35.86■■■■□ 3.336e-8■□□□□ 8.1
U2AF1Q01081 FTCD-212ENST00000498355 1936 ntTSL 235.34■■■■□ 3.256e-8■□□□□ 8.1
U2AF1Q01081 FTCD-204ENST00000397748 1955 ntTSL 1 (best) BASIC34.96■■■■□ 3.196e-8■□□□□ 8.1
U2AF1Q01081 FTCD-201ENST00000291670 1905 ntAPPRIS P1 TSL 1 (best) BASIC33.63■■■□□ 2.976e-8■□□□□ 8.1
U2AF1Q01081 PRPSAP1-204ENST00000436498 1003 ntTSL 326.52■■□□□ 1.846e-8■□□□□ 8.1
U2AF1Q01081 FTCD-210ENST00000488577 447 ntTSL 326.07■■□□□ 1.766e-8■□□□□ 8.1
U2AF1Q01081 FTCD-211ENST00000494498 840 ntTSL 326.07■■□□□ 1.766e-8■□□□□ 8.1
U2AF1Q01081 FTCD-206ENST00000460011 1260 ntTSL 1 (best)25.69■■□□□ 1.76e-8■□□□□ 8.1
U2AF1Q01081 STK39-201ENST00000355999 3820 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.876e-8■□□□□ 8.1
U2AF1Q01081 PRPSAP1-206ENST00000446526 3660 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.486e-8■□□□□ 8.1
U2AF1Q01081 PRPSAP1-201ENST00000324684 1678 ntTSL 2 BASIC13.75□□□□□ -0.216e-8■□□□□ 8.1
U2AF1Q01081 PRPSAP1-203ENST00000435555 916 ntTSL 513.75□□□□□ -0.216e-8■□□□□ 8.1
U2AF1Q01081 PRPSAP1-210ENST00000586137 473 ntTSL 313.75□□□□□ -0.216e-8■□□□□ 8.1
U2AF1Q01081 STK39-203ENST00000487143 2214 ntTSL 1 (best)7.71□□□□□ -1.186e-8■□□□□ 8.1
U2AF1Q01081 CC2D1A-202ENST00000585896 1843 ntTSL 226.21■■□□□ 1.797e-6■□□□□ 8.1
U2AF1Q01081 VWCE-206ENST00000538438 1076 ntTSL 321.34■■□□□ 1.017e-6■□□□□ 8.1
U2AF1Q01081 SPG7-205ENST00000561945 411 ntTSL 319.44■□□□□ 0.77e-6■□□□□ 8.1
U2AF1Q01081 VWCE-205ENST00000535710 1437 ntTSL 2 BASIC19.09■□□□□ 0.657e-6■□□□□ 8.1
U2AF1Q01081 VWCE-201ENST00000301770 3368 ntTSL 1 (best)18.98■□□□□ 0.637e-6■□□□□ 8.1
U2AF1Q01081 VWCE-202ENST00000335613 3640 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.587e-6■□□□□ 8.1
U2AF1Q01081 SPG7-207ENST00000563218 654 ntTSL 517.78■□□□□ 0.447e-6■□□□□ 8.1
U2AF1Q01081 VWCE-208ENST00000613271 3032 ntTSL 5 BASIC15.03■□□□□ -07e-6■□□□□ 8.1
U2AF1Q01081 LPIN2-201ENST00000261596 6229 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.147e-6■□□□□ 8.1
U2AF1Q01081 CC2D1A-209ENST00000589679 610 ntTSL 313.88□□□□□ -0.197e-6■□□□□ 8.1
U2AF1Q01081 TTLL4-211ENST00000448224 583 ntTSL 513.86□□□□□ -0.197e-6■□□□□ 8.1
U2AF1Q01081 ARHGAP5-208ENST00000555814 583 ntTSL 411.85□□□□□ -0.517e-6■□□□□ 8.1
U2AF1Q01081 ARHGAP5-209ENST00000556191 654 ntTSL 43.19□□□□□ -1.97e-6■□□□□ 8.1
U2AF1Q01081 NFATC2IP-202ENST00000562977 638 ntTSL 435.35■■■■□ 3.255e-7■□□□□ 8.1
U2AF1Q01081 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.435e-7■□□□□ 8.1
U2AF1Q01081 TRIM28-206ENST00000595974 665 ntTSL 321.68■■□□□ 1.065e-13■□□□□ 8.1
U2AF1Q01081 TRIM28-213ENST00000598355 714 ntTSL 221.59■■□□□ 1.055e-13■□□□□ 8.1
U2AF1Q01081 NFATC2IP-206ENST00000568148 1157 ntTSL 2 BASIC17.35■□□□□ 0.375e-7■□□□□ 8.1
U2AF1Q01081 NFATC2IP-203ENST00000564978 2350 ntTSL 1 (best) BASIC12.33□□□□□ -0.445e-7■□□□□ 8.1
U2AF1Q01081 TRIM28-214ENST00000600840 338 ntTSL 211.6□□□□□ -0.555e-13■□□□□ 8.1
U2AF1Q01081 CALCOCO1-217ENST00000549935 2112 ntTSL 516.15■□□□□ 0.182e-7■□□□□ 8.1
U2AF1Q01081 NEAT1_3.1-201ENST00000613347 159 ntBASIC14.87□□□□□ -0.031e-323■□□□□ 8
U2AF1Q01081 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC26.6■■□□□ 1.855e-6■□□□□ 8
U2AF1Q01081 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC22.78■■□□□ 1.245e-6■□□□□ 8
U2AF1Q01081 FMO5-205ENST00000527849 2410 ntTSL 522.43■■□□□ 1.185e-6■□□□□ 8
U2AF1Q01081 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC21.04■□□□□ 0.965e-6■□□□□ 8
U2AF1Q01081 PABPC4-201ENST00000372856 3016 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.825e-6■□□□□ 8
U2AF1Q01081 PABPC4-202ENST00000372857 3048 ntTSL 1 (best) BASIC19.83■□□□□ 0.775e-6■□□□□ 8
U2AF1Q01081 STK36-215ENST00000486644 730 ntTSL 518.93■□□□□ 0.625e-6■□□□□ 8
U2AF1Q01081 PABPC4-219ENST00000525045 765 ntTSL 218.82■□□□□ 0.65e-6■□□□□ 8
U2AF1Q01081 PABPC4-205ENST00000421687 1663 ntTSL 518.73■□□□□ 0.595e-6■□□□□ 8
U2AF1Q01081 PABPC4-216ENST00000492468 2257 ntTSL 218.45■□□□□ 0.545e-6■□□□□ 8
U2AF1Q01081 PABPC4-212ENST00000477556 413 ntTSL 317.54■□□□□ 0.45e-6■□□□□ 8
U2AF1Q01081 STK36-209ENST00000462031 582 ntTSL 216.72■□□□□ 0.275e-6■□□□□ 8
U2AF1Q01081 PABPC4-215ENST00000484555 450 ntTSL 516.57■□□□□ 0.245e-6■□□□□ 8
U2AF1Q01081 MAGED1-201ENST00000326587 2747 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.195e-6■□□□□ 8
U2AF1Q01081 PABPC4-206ENST00000437136 876 ntTSL 516.16■□□□□ 0.185e-6■□□□□ 8
U2AF1Q01081 MAGED1-209ENST00000485420 2906 ntTSL 515.79■□□□□ 0.125e-6■□□□□ 8
U2AF1Q01081 MAGED1-203ENST00000375722 2806 ntAPPRIS P1 TSL 5 BASIC15.53■□□□□ 0.085e-6■□□□□ 8
U2AF1Q01081 COG4-205ENST00000526700 1978 ntTSL 515.42■□□□□ 0.065e-6■□□□□ 8
U2AF1Q01081 MAGED1-202ENST00000375695 2875 ntTSL 1 (best) BASIC15.05■□□□□ 05e-6■□□□□ 8
U2AF1Q01081 COG4-202ENST00000393612 2756 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.065e-6■□□□□ 8
U2AF1Q01081 COG4-201ENST00000323786 2833 ntAPPRIS P3 TSL 1 (best) BASIC14.46□□□□□ -0.095e-6■□□□□ 8
U2AF1Q01081 COG4-203ENST00000482252 2953 ntTSL 214.37□□□□□ -0.115e-6■□□□□ 8
U2AF1Q01081 COG4-211ENST00000564415 3000 ntTSL 514.02□□□□□ -0.175e-6■□□□□ 8
U2AF1Q01081 STK36-204ENST00000419433 2093 ntTSL 213.73□□□□□ -0.215e-6■□□□□ 8
U2AF1Q01081 MAGED1-210ENST00000494718 5418 ntTSL 213□□□□□ -0.335e-6■□□□□ 8
U2AF1Q01081 MAGED1-204ENST00000375772 2701 ntAPPRIS P1 TSL 5 BASIC12.96□□□□□ -0.345e-6■□□□□ 8
U2AF1Q01081 COG4-207ENST00000530314 3488 ntTSL 1 (best)12.57□□□□□ -0.45e-6■□□□□ 8
U2AF1Q01081 PABPC4-209ENST00000468476 3592 ntTSL 211.6□□□□□ -0.555e-6■□□□□ 8
U2AF1Q01081 FMO5-203ENST00000441068 1696 ntTSL 1 (best) BASIC10.7□□□□□ -0.75e-6■□□□□ 8
U2AF1Q01081 PABPC4-222ENST00000527718 746 ntTSL 58.16□□□□□ -1.15e-6■□□□□ 8
U2AF1Q01081 A2M-202ENST00000404455 623 ntTSL 57.12□□□□□ -1.274e-10■□□□□ 8
U2AF1Q01081 A2M-209ENST00000539638 590 ntTSL 47.12□□□□□ -1.274e-10■□□□□ 8
U2AF1Q01081 DDB1-220ENST00000542337 558 ntTSL 327.06■■□□□ 1.923e-7■□□□□ 8
U2AF1Q01081 DDB1-222ENST00000543627 540 ntTSL 514.81□□□□□ -0.043e-7■□□□□ 8
U2AF1Q01081 DDB1-214ENST00000539426 805 ntTSL 314.57□□□□□ -0.083e-7■□□□□ 8
U2AF1Q01081 DDB1-221ENST00000543162 575 ntTSL 414.22□□□□□ -0.133e-7■□□□□ 8
U2AF1Q01081 DDB1-206ENST00000535283 1220 ntTSL 212.93□□□□□ -0.343e-7■□□□□ 8
U2AF1Q01081 DDB1-208ENST00000537120 1215 ntTSL 211.21□□□□□ -0.613e-7■□□□□ 8
U2AF1Q01081 DDB1-210ENST00000538129 475 ntTSL 27.89□□□□□ -1.153e-7■□□□□ 8
Retrieved 96 of 10,096 protein–RNA pairs in 261.4 ms