RNA–Protein interactions for RNA: ENST00000538129.1

DDB1-210, Transcript of damage specific DNA binding protein 1, humanhuman

TSL 2

Gene DDB1, Length 475 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDB1-210ENST00000538129 AEBP2Q6ZN18 517 aaPredicted RBP20.63■□□□□ 0.89
DDB1-210ENST00000538129 CHIC1Q5VXU3 224 aa20.29■□□□□ 0.84
DDB1-210ENST00000538129 SENP3Q9H4L4 574 aaPredicted RBP17.77■□□□□ 0.44
DDB1-210ENST00000538129 PHF23Q9BUL5 403 aaPredicted RBP17.71■□□□□ 0.43
DDB1-210ENST00000538129 PLPPR3Q6T4P5 718 aa16.57■□□□□ 0.24
DDB1-210ENST00000538129 FOXD1Q16676 465 aa16.33■□□□□ 0.2
DDB1-210ENST00000538129 ADRA2BP18089 450 aa15.67■□□□□ 0.1
DDB1-210ENST00000538129 PPP6R1Q9UPN7 881 aa15.62■□□□□ 0.09
DDB1-210ENST00000538129 PIAS4Q8N2W9 510 aaPredicted RBP15.5■□□□□ 0.07
DDB1-210ENST00000538129 MSH5O43196 834 aa15.27■□□□□ 0.04
DDB1-210ENST00000538129 SCAF1Q9H7N4 1312 aaKnown RBP14.62□□□□□ -0.07
DDB1-210ENST00000538129 PPP4R3CPQ6ZMV5 832 aa14.52□□□□□ -0.09
DDB1-210ENST00000538129 NCBP3Q53F19 620 aaKnown RBP14.31□□□□□ -0.12
DDB1-210ENST00000538129 CNKSR2Q8WXI2 1034 aa14.19□□□□□ -0.14
DDB1-210ENST00000538129 MAPK8IP2Q13387 824 aaPredicted RBP14.17□□□□□ -0.14
DDB1-210ENST00000538129 NISCHQ9Y2I1 1504 aa14.15□□□□□ -0.14
DDB1-210ENST00000538129 DMRT2Q9Y5R5 561 aa14.1□□□□□ -0.15
DDB1-210ENST00000538129 KCNA4P22459 653 aa14.07□□□□□ -0.16
DDB1-210ENST00000538129 RNF216Q9NWF9 866 aaPredicted RBP13.9□□□□□ -0.18
DDB1-210ENST00000538129 NPM3O75607 178 aaKnown RBP13.87□□□□□ -0.19
DDB1-210ENST00000538129 HOXD11P31277 338 aaPredicted RBP13.8□□□□□ -0.2
DDB1-210ENST00000538129 POTEDQ86YR6 584 aa13.78□□□□□ -0.2
DDB1-210ENST00000538129 DCAF8L1A6NGE4 600 aa13.58□□□□□ -0.24
DDB1-210ENST00000538129 DNAJC5BQ9UF47 199 aa13.55□□□□□ -0.24
DDB1-210ENST00000538129 SLC4A1APQ9BWU0 796 aaKnown RBP13.51□□□□□ -0.25
DDB1-210ENST00000538129 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.25□□□□□ -0.294e-8■□□□□ 8.6
DDB1-210ENST00000538129 FOXD4L1Q9NU39 408 aa13.08□□□□□ -0.32
DDB1-210ENST00000538129 SLC4A2P04920 1241 aa13.05□□□□□ -0.32
DDB1-210ENST00000538129 EHMT2Q96KQ7 1210 aa13.03□□□□□ -0.32
DDB1-210ENST00000538129 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.99□□□□□ -0.33
DDB1-210ENST00000538129 HNRNPUL2Q1KMD3 747 aaKnown RBP12.99□□□□□ -0.33
DDB1-210ENST00000538129 RNF39Q9H2S5 420 aa12.96□□□□□ -0.33
DDB1-210ENST00000538129 MYCNP04198 464 aaPredicted RBP12.94□□□□□ -0.34
DDB1-210ENST00000538129 C1QBPQ07021 282 aaKnown RBP12.92□□□□□ -0.34
DDB1-210ENST00000538129 APLP2Q06481 763 aa12.91□□□□□ -0.34
DDB1-210ENST00000538129 U3KPZ7 1027 aaPredicted RBP12.88□□□□□ -0.35
DDB1-210ENST00000538129 SAMD1Q6SPF0 538 aaPredicted RBP12.87□□□□□ -0.35
DDB1-210ENST00000538129 ZBTB22O15209 634 aa12.84□□□□□ -0.35
DDB1-210ENST00000538129 CSRNP3Q8WYN3 585 aa12.84□□□□□ -0.35
DDB1-210ENST00000538129 CACNB1Q02641 598 aaPredicted RBP12.73□□□□□ -0.37
DDB1-210ENST00000538129 ATXN8OSP0DMR3 200 aa12.68□□□□□ -0.38
DDB1-210ENST00000538129 CAPN15O75808 1086 aa12.61□□□□□ -0.39
DDB1-210ENST00000538129 ZNF219Q9P2Y4 722 aaPredicted RBP12.6□□□□□ -0.39
DDB1-210ENST00000538129 CCDC180Q9P1Z9 1646 aa12.52□□□□□ -0.4
DDB1-210ENST00000538129 TRHP20396 242 aaPredicted RBP12.51□□□□□ -0.41
DDB1-210ENST00000538129 SPINK5Q9NQ38 1064 aaPredicted RBP12.5□□□□□ -0.41
DDB1-210ENST00000538129 ATF5Q9Y2D1 282 aaPredicted RBP12.37□□□□□ -0.43
DDB1-210ENST00000538129 DSG3P32926 999 aa12.31□□□□□ -0.44
DDB1-210ENST00000538129 POLA2Q14181 598 aa12.29□□□□□ -0.44
DDB1-210ENST00000538129 ABCB7O75027 752 aa12.26□□□□□ -0.45
DDB1-210ENST00000538129 ZBTB12Q9Y330 459 aaPredicted RBP12.25□□□□□ -0.45
DDB1-210ENST00000538129 ABCC9O60706 1549 aa12.18□□□□□ -0.46
DDB1-210ENST00000538129 FBLN2P98095 1184 aa12.16□□□□□ -0.46
DDB1-210ENST00000538129 RBM42Q9BTD8 480 aaKnown RBP11.92□□□□□ -0.5
DDB1-210ENST00000538129 MKRN4PQ13434 485 aaPredicted RBP11.86□□□□□ -0.51
DDB1-210ENST00000538129 SPDYE2BA6NHP3 402 aa11.83□□□□□ -0.52
DDB1-210ENST00000538129 DCAF8L2P0C7V8 631 aa11.83□□□□□ -0.52
DDB1-210ENST00000538129 SPDYE6P0CI01 402 aa11.83□□□□□ -0.52
DDB1-210ENST00000538129 SPDYE2Q495Y8 402 aa11.83□□□□□ -0.52
DDB1-210ENST00000538129 OSCARQ8IYS5 282 aa11.82□□□□□ -0.52
DDB1-210ENST00000538129 NACADO15069 1562 aa11.79□□□□□ -0.52
DDB1-210ENST00000538129 RB1CC1Q8TDY2 1594 aa11.77□□□□□ -0.53
DDB1-210ENST00000538129 ZNF692Q9BU19 519 aaPredicted RBP11.77□□□□□ -0.53
DDB1-210ENST00000538129 ZCCHC6Q5VYS8 1495 aaKnown RBP11.76□□□□□ -0.53
DDB1-210ENST00000538129 MYO15BQ96JP2 1530 aa11.76□□□□□ -0.53
DDB1-210ENST00000538129 SPDYE4A6NLX3 237 aa11.75□□□□□ -0.53
DDB1-210ENST00000538129 DCAF1Q9Y4B6 1507 aa11.72□□□□□ -0.53
DDB1-210ENST00000538129 FKBP8Q14318 412 aa11.7□□□□□ -0.54
DDB1-210ENST00000538129 AKT1S1Q96B36 256 aa11.69□□□□□ -0.54
DDB1-210ENST00000538129 SSUH2Q9Y2M2 353 aa11.63□□□□□ -0.55
DDB1-210ENST00000538129 PABPN1Q86U42 306 aaKnown RBP eCLIP11.56□□□□□ -0.56
DDB1-210ENST00000538129 STAG3Q9UJ98 1225 aa11.53□□□□□ -0.56
DDB1-210ENST00000538129 SPDYE1Q8NFV5 336 aaPredicted RBP11.51□□□□□ -0.57
DDB1-210ENST00000538129 REM2Q8IYK8 340 aaPredicted RBP11.5□□□□□ -0.57
DDB1-210ENST00000538129 UNC13AQ9UPW8 1703 aa11.48□□□□□ -0.57
DDB1-210ENST00000538129 FBXO3Q9UK99 471 aa11.47□□□□□ -0.57
DDB1-210ENST00000538129 PROM2Q8N271 834 aa11.45□□□□□ -0.58
DDB1-210ENST00000538129 CLEC11AQ9Y240 323 aa11.42□□□□□ -0.58
DDB1-210ENST00000538129 SCRIBQ14160 1630 aa11.4□□□□□ -0.58
DDB1-210ENST00000538129 BICRAQ9NZM4 1560 aa11.39□□□□□ -0.59
DDB1-210ENST00000538129 PRR29P0C7W0 189 aa11.35□□□□□ -0.59
DDB1-210ENST00000538129 PITPNM1O00562 1244 aa11.34□□□□□ -0.59
DDB1-210ENST00000538129 PLEKHG5O94827 1062 aa11.33□□□□□ -0.6
DDB1-210ENST00000538129 CHRDL2Q6WN34 429 aa11.31□□□□□ -0.6
DDB1-210ENST00000538129 SHROOM4Q9ULL8 1493 aa11.31□□□□□ -0.6
DDB1-210ENST00000538129 MIER1Q8N108 512 aa11.2□□□□□ -0.62
DDB1-210ENST00000538129 PLCD3Q8N3E9 789 aa11.2□□□□□ -0.62
DDB1-210ENST00000538129 ZBTB47Q9UFB7 747 aaPredicted RBP11.19□□□□□ -0.62
DDB1-210ENST00000538129 VASPP50552 380 aaPredicted RBP11.15□□□□□ -0.62
DDB1-210ENST00000538129 FXR2P51116 673 aaKnown RBP eCLIP11.15□□□□□ -0.622e-7■■■□□ 17.5
DDB1-210ENST00000538129 PRKAR2AP13861 404 aaKnown RBP11.11□□□□□ -0.63
DDB1-210ENST00000538129 PIP4P2Q8N4L2 257 aa11.11□□□□□ -0.63
DDB1-210ENST00000538129 EIF4G1Q04637 1599 aaKnown RBP11.09□□□□□ -0.63
DDB1-210ENST00000538129 NPM1P06748 294 aaKnown RBP eCLIP11.08□□□□□ -0.64
DDB1-210ENST00000538129 KLHL34Q8N239 644 aa11.08□□□□□ -0.64
DDB1-210ENST00000538129 CREBZFQ9NS37 354 aa11.05□□□□□ -0.64
DDB1-210ENST00000538129 CC2D2AQ9P2K1 1620 aa11.02□□□□□ -0.64
DDB1-210ENST00000538129 CHADLQ6NUI6 762 aa11.02□□□□□ -0.65
DDB1-210ENST00000538129 FARP1Q9Y4F1 1045 aaPredicted RBP11□□□□□ -0.65
DDB1-210ENST00000538129 CECR2Q9BXF3 1484 aa11□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms