RNA–Protein interactions for RNA: ENST00000468476.1

PABPC4-209, Transcript of poly(A) binding protein cytoplasmic 4, humanhuman

TSL 2

Gene PABPC4, Length 3,592 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PABPC4-209ENST00000468476 NISCHQ9Y2I1 1504 aa18.13■□□□□ 0.49
PABPC4-209ENST00000468476 DCAF8L2P0C7V8 631 aa16.23■□□□□ 0.19
PABPC4-209ENST00000468476 SHROOM4Q9ULL8 1493 aa16.05■□□□□ 0.16
PABPC4-209ENST00000468476 SUPT5HO00267 1087 aaKnown RBP15.69■□□□□ 0.1
PABPC4-209ENST00000468476 PELP1Q8IZL8 1130 aaKnown RBP15.37■□□□□ 0.05
PABPC4-209ENST00000468476 CCDC180Q9P1Z9 1646 aa15.22■□□□□ 0.03
PABPC4-209ENST00000468476 ZCCHC6Q5VYS8 1495 aaKnown RBP15.18■□□□□ 0.02
PABPC4-209ENST00000468476 ABCC9O60706 1549 aa15.11■□□□□ 0.01
PABPC4-209ENST00000468476 MYT1Q01538 1121 aa14.98□□□□□ -0.01
PABPC4-209ENST00000468476 EHMT2Q96KQ7 1210 aa14.8□□□□□ -0.04
PABPC4-209ENST00000468476 SCRIBQ14160 1630 aa14.76□□□□□ -0.05
PABPC4-209ENST00000468476 HRCP23327 699 aa14.75□□□□□ -0.05
PABPC4-209ENST00000468476 CHIC1Q5VXU3 224 aa14.69□□□□□ -0.06
PABPC4-209ENST00000468476 PPARGC1BQ86YN6 1023 aaKnown RBP14.67□□□□□ -0.06
PABPC4-209ENST00000468476 FAM9AQ8IZU1 332 aaPredicted RBP14.64□□□□□ -0.07
PABPC4-209ENST00000468476 PABPN1Q86U42 306 aaKnown RBP eCLIP14.63□□□□□ -0.07
PABPC4-209ENST00000468476 DCAF1Q9Y4B6 1507 aa14.54□□□□□ -0.08
PABPC4-209ENST00000468476 LOC105371045A0A1W2PR82 267 aa14.52□□□□□ -0.09
PABPC4-209ENST00000468476 TRIM41Q8WV44 630 aa14.46□□□□□ -0.09
PABPC4-209ENST00000468476 SCAF1Q9H7N4 1312 aaKnown RBP14.44□□□□□ -0.1
PABPC4-209ENST00000468476 MYO15BQ96JP2 1530 aa14.38□□□□□ -0.11
PABPC4-209ENST00000468476 PCGF6Q9BYE7 350 aa14.38□□□□□ -0.11
PABPC4-209ENST00000468476 CECR2Q9BXF3 1484 aa14.37□□□□□ -0.11
PABPC4-209ENST00000468476 RSF1Q96T23 1441 aaPredicted RBP14.36□□□□□ -0.11
PABPC4-209ENST00000468476 NACADO15069 1562 aa14.34□□□□□ -0.11
PABPC4-209ENST00000468476 RB1CC1Q8TDY2 1594 aa14.28□□□□□ -0.12
PABPC4-209ENST00000468476 MROH2BQ7Z745 1585 aa14.19□□□□□ -0.14
PABPC4-209ENST00000468476 TTBK1Q5TCY1 1321 aaPredicted RBP14.19□□□□□ -0.14
PABPC4-209ENST00000468476 RANGAP1P46060 587 aaPredicted RBP14.11□□□□□ -0.15
PABPC4-209ENST00000468476 WIZO95785 1651 aa14.09□□□□□ -0.15
PABPC4-209ENST00000468476 BCL11AQ9H165 835 aa14.07□□□□□ -0.16
PABPC4-209ENST00000468476 PRKCSHP14314 528 aaPredicted RBP14.07□□□□□ -0.16
PABPC4-209ENST00000468476 UBTFP17480 764 aaKnown RBP13.96□□□□□ -0.17
PABPC4-209ENST00000468476 BAZ1AQ9NRL2 1556 aaPredicted RBP13.95□□□□□ -0.18
PABPC4-209ENST00000468476 GTF3C3Q9Y5Q9 886 aa13.94□□□□□ -0.18
PABPC4-209ENST00000468476 UNC13AQ9UPW8 1703 aa13.92□□□□□ -0.18
PABPC4-209ENST00000468476 CENPBP07199 599 aaPredicted RBP13.88□□□□□ -0.19
PABPC4-209ENST00000468476 ACIN1Q9UKV3 1341 aaKnown RBP13.86□□□□□ -0.19
PABPC4-209ENST00000468476 CCDC88BA6NC98 1476 aa13.85□□□□□ -0.19
PABPC4-209ENST00000468476 NEUROD1Q13562 356 aa13.84□□□□□ -0.19
PABPC4-209ENST00000468476 ABCC8Q09428 1581 aa13.83□□□□□ -0.2
PABPC4-209ENST00000468476 SMARCA4P51532 1647 aa13.82□□□□□ -0.2
PABPC4-209ENST00000468476 TRIM26Q12899 539 aaPredicted RBP13.8□□□□□ -0.2
PABPC4-209ENST00000468476 BICRAQ9NZM4 1560 aa13.76□□□□□ -0.21
PABPC4-209ENST00000468476 BAZ1BQ9UIG0 1483 aaKnown RBP13.74□□□□□ -0.21
PABPC4-209ENST00000468476 TOP2AP11388 1531 aaKnown RBP13.73□□□□□ -0.21
PABPC4-209ENST00000468476 ERICH6Q7L0X2 663 aa13.73□□□□□ -0.21
PABPC4-209ENST00000468476 CSRNP3Q8WYN3 585 aa13.71□□□□□ -0.21
PABPC4-209ENST00000468476 SOGA1O94964 1423 aa13.7□□□□□ -0.22
PABPC4-209ENST00000468476 ATAD2BQ9ULI0 1458 aa13.66□□□□□ -0.22
PABPC4-209ENST00000468476 SMARCA2P51531 1590 aa13.66□□□□□ -0.22
PABPC4-209ENST00000468476 RUSC2Q8N2Y8 1516 aa13.62□□□□□ -0.23
PABPC4-209ENST00000468476 APLP2Q06481 763 aa13.62□□□□□ -0.23
PABPC4-209ENST00000468476 ZEB1P37275 1124 aaPredicted RBP13.62□□□□□ -0.23
PABPC4-209ENST00000468476 WRNQ14191 1432 aaPredicted RBP eCLIP13.62□□□□□ -0.23
PABPC4-209ENST00000468476 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.58□□□□□ -0.23
PABPC4-209ENST00000468476 ATP1B4Q9UN42 357 aaPredicted RBP13.58□□□□□ -0.23
PABPC4-209ENST00000468476 CCER1Q8TC90 406 aaPredicted RBP13.56□□□□□ -0.24
PABPC4-209ENST00000468476 HNRNPUL2Q1KMD3 747 aaKnown RBP13.53□□□□□ -0.24
PABPC4-209ENST00000468476 YTHDC1Q96MU7 727 aaKnown RBP13.51□□□□□ -0.25
PABPC4-209ENST00000468476 ANP32EQ9BTT0 268 aa13.5□□□□□ -0.25
PABPC4-209ENST00000468476 EIF4G1Q04637 1599 aaKnown RBP13.48□□□□□ -0.25
PABPC4-209ENST00000468476 CEP162Q5TB80 1403 aa13.47□□□□□ -0.25
PABPC4-209ENST00000468476 P3H3Q8IVL6 736 aa13.46□□□□□ -0.26
PABPC4-209ENST00000468476 ITGAEP38570 1179 aa13.44□□□□□ -0.26
PABPC4-209ENST00000468476 DNAJC5BQ9UF47 199 aa13.43□□□□□ -0.26
PABPC4-209ENST00000468476 SYNJ1O43426 1573 aa13.38□□□□□ -0.27
PABPC4-209ENST00000468476 GOLGA3Q08378 1498 aa13.36□□□□□ -0.27
PABPC4-209ENST00000468476 TNIKQ9UKE5 1360 aa13.35□□□□□ -0.27
PABPC4-209ENST00000468476 NCAPD3P42695 1498 aa13.34□□□□□ -0.27
PABPC4-209ENST00000468476 CLIP1P30622 1438 aa13.34□□□□□ -0.27
PABPC4-209ENST00000468476 DIEXFQ68CQ4 756 aaKnown RBP13.32□□□□□ -0.28
PABPC4-209ENST00000468476 EEA1Q15075 1411 aa13.31□□□□□ -0.28
PABPC4-209ENST00000468476 RAPGEF2Q9Y4G8 1499 aa13.31□□□□□ -0.28
PABPC4-209ENST00000468476 PEG3Q9GZU2 1588 aa13.3□□□□□ -0.28
PABPC4-209ENST00000468476 CEP164Q9UPV0 1460 aa13.28□□□□□ -0.28
PABPC4-209ENST00000468476 CADPSQ9ULU8 1353 aa13.27□□□□□ -0.28
PABPC4-209ENST00000468476 CC2D2AQ9P2K1 1620 aa13.27□□□□□ -0.28
PABPC4-209ENST00000468476 ARID3CA6NKF2 412 aa13.27□□□□□ -0.29
PABPC4-209ENST00000468476 NESP48681 1621 aa13.26□□□□□ -0.29
PABPC4-209ENST00000468476 CUX2O14529 1486 aa13.25□□□□□ -0.29
PABPC4-209ENST00000468476 KIF27Q86VH2 1401 aa13.24□□□□□ -0.29
PABPC4-209ENST00000468476 ANO8Q9HCE9 1232 aaPredicted RBP13.2□□□□□ -0.3
PABPC4-209ENST00000468476 CFTRP13569 1480 aa13.19□□□□□ -0.3
PABPC4-209ENST00000468476 CUX1P39880 1505 aa13.19□□□□□ -0.3
PABPC4-209ENST00000468476 HMGXB3Q12766 1538 aa13.19□□□□□ -0.3
PABPC4-209ENST00000468476 FBLN2P98095 1184 aa13.18□□□□□ -0.3
PABPC4-209ENST00000468476 FAM50AQ14320 339 aaKnown RBP13.17□□□□□ -0.3
PABPC4-209ENST00000468476 KANK4Q5T7N3 995 aaPredicted RBP13.17□□□□□ -0.3
PABPC4-209ENST00000468476 TDRD9Q8NDG6 1382 aaKnown RBP13.16□□□□□ -0.3
PABPC4-209ENST00000468476 FANCD2Q9BXW9 1451 aa13.16□□□□□ -0.3
PABPC4-209ENST00000468476 RAD54L2Q9Y4B4 1467 aa13.15□□□□□ -0.31
PABPC4-209ENST00000468476 CARMIL1Q5VZK9 1371 aa13.13□□□□□ -0.31
PABPC4-209ENST00000468476 TOP2BQ02880 1626 aa13.12□□□□□ -0.31
PABPC4-209ENST00000468476 FGD5Q6ZNL6 1462 aa13.12□□□□□ -0.31
PABPC4-209ENST00000468476 VPS8Q8N3P4 1428 aa13.09□□□□□ -0.31
PABPC4-209ENST00000468476 IGF1RP08069 1367 aa13.08□□□□□ -0.32
PABPC4-209ENST00000468476 TSHZ2Q9NRE2 1034 aa13.07□□□□□ -0.32
PABPC4-209ENST00000468476 CCDC136Q96JN2 1154 aa13.05□□□□□ -0.32
PABPC4-209ENST00000468476 KIF21BO75037 1637 aa13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms