RNA–Protein interactions for RNA: ENST00000372856.7

PABPC4-201, Transcript of poly(A) binding protein cytoplasmic 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PABPC4, Length 3,016 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PABPC4-201ENST00000372856 NISCHQ9Y2I1 1504 aa31.77■■■□□ 2.68
PABPC4-201ENST00000372856 SHROOM4Q9ULL8 1493 aa27.59■■■□□ 2.01
PABPC4-201ENST00000372856 SUPT5HO00267 1087 aaKnown RBP27.19■■□□□ 1.94
PABPC4-201ENST00000372856 ZCCHC6Q5VYS8 1495 aaKnown RBP26.9■■□□□ 1.9
PABPC4-201ENST00000372856 CCDC180Q9P1Z9 1646 aa26.7■■□□□ 1.86
PABPC4-201ENST00000372856 DCAF8L2P0C7V8 631 aa26.64■■□□□ 1.85
PABPC4-201ENST00000372856 CHIC1Q5VXU3 224 aa26.46■■□□□ 1.83
PABPC4-201ENST00000372856 MYO15BQ96JP2 1530 aa26.4■■□□□ 1.82
PABPC4-201ENST00000372856 HRCP23327 699 aa26.17■■□□□ 1.78
PABPC4-201ENST00000372856 PELP1Q8IZL8 1130 aaKnown RBP26.05■■□□□ 1.76
PABPC4-201ENST00000372856 PCGF6Q9BYE7 350 aa26.01■■□□□ 1.75
PABPC4-201ENST00000372856 DCAF1Q9Y4B6 1507 aa25.92■■□□□ 1.74
PABPC4-201ENST00000372856 PPARGC1BQ86YN6 1023 aaKnown RBP25.91■■□□□ 1.74
PABPC4-201ENST00000372856 LOC105371045A0A1W2PR82 267 aa25.8■■□□□ 1.72
PABPC4-201ENST00000372856 ABCC9O60706 1549 aa25.41■■□□□ 1.66
PABPC4-201ENST00000372856 TRIM26Q12899 539 aaPredicted RBP25.34■■□□□ 1.65
PABPC4-201ENST00000372856 RSF1Q96T23 1441 aaPredicted RBP25.32■■□□□ 1.64
PABPC4-201ENST00000372856 SCRIBQ14160 1630 aa25.31■■□□□ 1.64
PABPC4-201ENST00000372856 SCAF1Q9H7N4 1312 aaKnown RBP25.23■■□□□ 1.63
PABPC4-201ENST00000372856 TRIM41Q8WV44 630 aa25.23■■□□□ 1.63
PABPC4-201ENST00000372856 FAM9AQ8IZU1 332 aaPredicted RBP25.17■■□□□ 1.62
PABPC4-201ENST00000372856 MYT1Q01538 1121 aa25.14■■□□□ 1.61
PABPC4-201ENST00000372856 RB1CC1Q8TDY2 1594 aa25.08■■□□□ 1.6
PABPC4-201ENST00000372856 EHMT2Q96KQ7 1210 aa25.05■■□□□ 1.6
PABPC4-201ENST00000372856 CECR2Q9BXF3 1484 aa24.88■■□□□ 1.57
PABPC4-201ENST00000372856 ZEB1P37275 1124 aaPredicted RBP24.84■■□□□ 1.57
PABPC4-201ENST00000372856 MROH2BQ7Z745 1585 aa24.78■■□□□ 1.56
PABPC4-201ENST00000372856 NACADO15069 1562 aa24.71■■□□□ 1.55
PABPC4-201ENST00000372856 WIZO95785 1651 aa24.63■■□□□ 1.53
PABPC4-201ENST00000372856 BAZ1AQ9NRL2 1556 aaPredicted RBP24.41■■□□□ 1.5
PABPC4-201ENST00000372856 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.4■■□□□ 1.5
PABPC4-201ENST00000372856 NEUROD1Q13562 356 aa24.35■■□□□ 1.49
PABPC4-201ENST00000372856 ACIN1Q9UKV3 1341 aaKnown RBP24.34■■□□□ 1.49
PABPC4-201ENST00000372856 GTF3C3Q9Y5Q9 886 aa24.32■■□□□ 1.48
PABPC4-201ENST00000372856 CCER1Q8TC90 406 aaPredicted RBP24.32■■□□□ 1.48
PABPC4-201ENST00000372856 EIF4G1Q04637 1599 aaKnown RBP24.3■■□□□ 1.48
PABPC4-201ENST00000372856 TTBK1Q5TCY1 1321 aaPredicted RBP24.29■■□□□ 1.48
PABPC4-201ENST00000372856 ABCC8Q09428 1581 aa24.25■■□□□ 1.47
PABPC4-201ENST00000372856 CCDC88BA6NC98 1476 aa24.23■■□□□ 1.47
PABPC4-201ENST00000372856 TOP2AP11388 1531 aaKnown RBP24.18■■□□□ 1.46
PABPC4-201ENST00000372856 SOGA1O94964 1423 aa24.12■■□□□ 1.45
PABPC4-201ENST00000372856 SMARCA4P51532 1647 aa24.11■■□□□ 1.45
PABPC4-201ENST00000372856 CEP162Q5TB80 1403 aa24.09■■□□□ 1.45
PABPC4-201ENST00000372856 SMARCA2P51531 1590 aa24.09■■□□□ 1.45
PABPC4-201ENST00000372856 WRNQ14191 1432 aaPredicted RBP eCLIP24.04■■□□□ 1.44
PABPC4-201ENST00000372856 UBTFP17480 764 aaKnown RBP24.03■■□□□ 1.44
PABPC4-201ENST00000372856 CSRNP3Q8WYN3 585 aa24.01■■□□□ 1.43
PABPC4-201ENST00000372856 TNIKQ9UKE5 1360 aa24■■□□□ 1.43
PABPC4-201ENST00000372856 RUSC2Q8N2Y8 1516 aa23.99■■□□□ 1.43
PABPC4-201ENST00000372856 CENPBP07199 599 aaPredicted RBP23.96■■□□□ 1.43
PABPC4-201ENST00000372856 DIEXFQ68CQ4 756 aaKnown RBP23.95■■□□□ 1.43
PABPC4-201ENST00000372856 PABPN1Q86U42 306 aaKnown RBP eCLIP23.93■■□□□ 1.42
PABPC4-201ENST00000372856 EEA1Q15075 1411 aa23.88■■□□□ 1.41
PABPC4-201ENST00000372856 UNC13AQ9UPW8 1703 aa23.87■■□□□ 1.41
PABPC4-201ENST00000372856 GOLGA3Q08378 1498 aa23.79■■□□□ 1.4
PABPC4-201ENST00000372856 BCL11AQ9H165 835 aa23.78■■□□□ 1.4
PABPC4-201ENST00000372856 HNRNPUL2Q1KMD3 747 aaKnown RBP23.7■■□□□ 1.39
PABPC4-201ENST00000372856 ZNF316A6NFI3 1004 aaPredicted RBP23.68■■□□□ 1.38
PABPC4-201ENST00000372856 BICRAQ9NZM4 1560 aa23.65■■□□□ 1.38
PABPC4-201ENST00000372856 YTHDC1Q96MU7 727 aaKnown RBP23.63■■□□□ 1.37
PABPC4-201ENST00000372856 CEP164Q9UPV0 1460 aa23.62■■□□□ 1.37
PABPC4-201ENST00000372856 RANGAP1P46060 587 aaPredicted RBP23.62■■□□□ 1.37
PABPC4-201ENST00000372856 SYNJ1O43426 1573 aa23.61■■□□□ 1.37
PABPC4-201ENST00000372856 CLIP1P30622 1438 aa23.6■■□□□ 1.37
PABPC4-201ENST00000372856 PEG3Q9GZU2 1588 aa23.54■■□□□ 1.36
PABPC4-201ENST00000372856 APLP2Q06481 763 aa23.52■■□□□ 1.36
PABPC4-201ENST00000372856 KIF21BO75037 1637 aa23.51■■□□□ 1.35
PABPC4-201ENST00000372856 ATAD2BQ9ULI0 1458 aa23.49■■□□□ 1.35
PABPC4-201ENST00000372856 VPS8Q8N3P4 1428 aa23.48■■□□□ 1.35
PABPC4-201ENST00000372856 RAPGEF2Q9Y4G8 1499 aa23.48■■□□□ 1.35
PABPC4-201ENST00000372856 BAZ1BQ9UIG0 1483 aaKnown RBP23.46■■□□□ 1.35
PABPC4-201ENST00000372856 MIER1Q8N108 512 aa23.43■■□□□ 1.34
PABPC4-201ENST00000372856 ANP32EQ9BTT0 268 aa23.29■■□□□ 1.32
PABPC4-201ENST00000372856 PRKCSHP14314 528 aaPredicted RBP23.26■■□□□ 1.31
PABPC4-201ENST00000372856 TOP2BQ02880 1626 aa23.23■■□□□ 1.31
PABPC4-201ENST00000372856 KANK4Q5T7N3 995 aaPredicted RBP23.2■■□□□ 1.3
PABPC4-201ENST00000372856 PRXQ9BXM0 1461 aa23.15■■□□□ 1.3
PABPC4-201ENST00000372856 ARAP1Q96P48 1450 aa23.14■■□□□ 1.29
PABPC4-201ENST00000372856 DHX57Q6P158 1386 aaKnown RBP23.13■■□□□ 1.29
PABPC4-201ENST00000372856 BIVM-ERCC5R4GMW8 1640 aa23.09■■□□□ 1.29
PABPC4-201ENST00000372856 ERICH3Q5RHP9 1530 aa23.09■■□□□ 1.29
PABPC4-201ENST00000372856 CLSPNQ9HAW4 1339 aa23.06■■□□□ 1.28
PABPC4-201ENST00000372856 CUX1P39880 1505 aa23.03■■□□□ 1.28
PABPC4-201ENST00000372856 ITGAEP38570 1179 aa23.01■■□□□ 1.27
PABPC4-201ENST00000372856 KIF27Q86VH2 1401 aa23.01■■□□□ 1.27
PABPC4-201ENST00000372856 TSHZ2Q9NRE2 1034 aa22.96■■□□□ 1.27
PABPC4-201ENST00000372856 RRBP1Q9P2E9 1410 aaKnown RBP22.95■■□□□ 1.26
PABPC4-201ENST00000372856 NCAPD3P42695 1498 aa22.94■■□□□ 1.26
PABPC4-201ENST00000372856 CCNB3Q8WWL7 1395 aa22.91■■□□□ 1.26
PABPC4-201ENST00000372856 ARHGAP35Q9NRY4 1499 aa22.91■■□□□ 1.26
PABPC4-201ENST00000372856 SUPT16HQ9Y5B9 1047 aaKnown RBP22.89■■□□□ 1.25
PABPC4-201ENST00000372856 HMGXB3Q12766 1538 aa22.88■■□□□ 1.25
PABPC4-201ENST00000372856 CFTRP13569 1480 aa22.85■■□□□ 1.25
PABPC4-201ENST00000372856 CUX2O14529 1486 aa22.8■■□□□ 1.24
PABPC4-201ENST00000372856 IGF1RP08069 1367 aa22.77■■□□□ 1.24
PABPC4-201ENST00000372856 RAB3GAP2Q9H2M9 1393 aa22.77■■□□□ 1.24
PABPC4-201ENST00000372856 CARMIL1Q5VZK9 1371 aa22.69■■□□□ 1.22
PABPC4-201ENST00000372856 P3H3Q8IVL6 736 aa22.68■■□□□ 1.22
PABPC4-201ENST00000372856 KCNH8Q96L42 1107 aa22.68■■□□□ 1.22
PABPC4-201ENST00000372856 FAM50AQ14320 339 aaKnown RBP22.68■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms