RNA–Protein interactions for RNA: ENST00000527718.1

PABPC4-222, Transcript of poly(A) binding protein cytoplasmic 4, human

TSL 5

Gene PABPC4, Length 746 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PABPC4-222	ENST00000527718	AEBP2	Q6ZN18	517 aa	Predicted RBP	19.26	■□□□□ 0.67
PABPC4-222	ENST00000527718	CHIC1	Q5VXU3	224 aa		18.04	■□□□□ 0.48
PABPC4-222	ENST00000527718	SENP3	Q9H4L4	574 aa	Predicted RBP	16.47	■□□□□ 0.23
PABPC4-222	ENST00000527718	PHF23	Q9BUL5	403 aa	Predicted RBP	16.18	■□□□□ 0.18
PABPC4-222	ENST00000527718	FOXD1	Q16676	465 aa		15.36	■□□□□ 0.05
PABPC4-222	ENST00000527718	POTED	Q86YR6	584 aa		14.59	□□□□□ -0.07
PABPC4-222	ENST00000527718	MSH5	O43196	834 aa		14.49	□□□□□ -0.09
PABPC4-222	ENST00000527718	PLPPR3	Q6T4P5	718 aa		14.26	□□□□□ -0.13
PABPC4-222	ENST00000527718	PIAS4	Q8N2W9	510 aa	Predicted RBP	14.23	□□□□□ -0.13
PABPC4-222	ENST00000527718	PPP6R1	Q9UPN7	881 aa		14.15	□□□□□ -0.14
PABPC4-222	ENST00000527718	ADRA2B	P18089	450 aa		14.03	□□□□□ -0.16
PABPC4-222	ENST00000527718	NISCH	Q9Y2I1	1504 aa		13.68	□□□□□ -0.22
PABPC4-222	ENST00000527718	DMRT2	Q9Y5R5	561 aa		13.04	□□□□□ -0.32
PABPC4-222	ENST00000527718	MAPK8IP2	Q13387	824 aa	Predicted RBP	12.97	□□□□□ -0.33
PABPC4-222	ENST00000527718	SCAF1	Q9H7N4	1312 aa	Known RBP	12.86	□□□□□ -0.35
PABPC4-222	ENST00000527718	CACNB1	Q02641	598 aa	Predicted RBP	12.5	□□□□□ -0.41
PABPC4-222	ENST00000527718	HOXD11	P31277	338 aa	Predicted RBP	12.49	□□□□□ -0.41
PABPC4-222	ENST00000527718	PPP4R3CP	Q6ZMV5	832 aa		12.44	□□□□□ -0.42
PABPC4-222	ENST00000527718	RNF39	Q9H2S5	420 aa		12.37	□□□□□ -0.43
PABPC4-222	ENST00000527718	DCAF8L1	A6NGE4	600 aa		12.29	□□□□□ -0.44
PABPC4-222	ENST00000527718	CNKSR2	Q8WXI2	1034 aa		12.29	□□□□□ -0.44
PABPC4-222	ENST00000527718	RNF216	Q9NWF9	866 aa	Predicted RBP	12.28	□□□□□ -0.44
PABPC4-222	ENST00000527718	DNAJC5B	Q9UF47	199 aa		12.21	□□□□□ -0.45
PABPC4-222	ENST00000527718	C1QBP	Q07021	282 aa	Known RBP	12.17	□□□□□ -0.46
PABPC4-222	ENST00000527718	CCDC180	Q9P1Z9	1646 aa		11.96	□□□□□ -0.5
PABPC4-222	ENST00000527718	NCBP3	Q53F19	620 aa	Known RBP	11.86	□□□□□ -0.51
PABPC4-222	ENST00000527718	NPM3	O75607	178 aa	Known RBP	11.73	□□□□□ -0.53
PABPC4-222	ENST00000527718	GRWD1	Q9BQ67	446 aa	Known RBP eCLIP	11.73	□□□□□ -0.53	8e-9	■■■□□ 14.9
PABPC4-222	ENST00000527718	ABCC9	O60706	1549 aa		11.61	□□□□□ -0.55
PABPC4-222	ENST00000527718		U3KPZ7	1027 aa	Predicted RBP	11.56	□□□□□ -0.56
PABPC4-222	ENST00000527718	ZCCHC6	Q5VYS8	1495 aa	Known RBP	11.5	□□□□□ -0.57
PABPC4-222	ENST00000527718	DSG3	P32926	999 aa		11.46	□□□□□ -0.57
PABPC4-222	ENST00000527718	DCAF1	Q9Y4B6	1507 aa		11.43	□□□□□ -0.58
PABPC4-222	ENST00000527718	SPINK5	Q9NQ38	1064 aa	Predicted RBP	11.42	□□□□□ -0.58
PABPC4-222	ENST00000527718	POTEH	Q6S545	545 aa		11.36	□□□□□ -0.59
PABPC4-222	ENST00000527718	CAPN15	O75808	1086 aa		11.34	□□□□□ -0.59
PABPC4-222	ENST00000527718	MYO15B	Q96JP2	1530 aa		11.31	□□□□□ -0.6
PABPC4-222	ENST00000527718	DCAF8L2	P0C7V8	631 aa		11.31	□□□□□ -0.6
PABPC4-222	ENST00000527718	SLC4A2	P04920	1241 aa		11.3	□□□□□ -0.6
PABPC4-222	ENST00000527718	KCNA4	P22459	653 aa		11.22	□□□□□ -0.61
PABPC4-222	ENST00000527718	NACAD	O15069	1562 aa		11.19	□□□□□ -0.62
PABPC4-222	ENST00000527718	RB1CC1	Q8TDY2	1594 aa		11.19	□□□□□ -0.62
PABPC4-222	ENST00000527718	APLP2	Q06481	763 aa		11.17	□□□□□ -0.62
PABPC4-222	ENST00000527718	ZNF219	Q9P2Y4	722 aa	Predicted RBP	11.16	□□□□□ -0.62
PABPC4-222	ENST00000527718	HNRNPUL2-BSCL2	H3BQZ7	746 aa	Predicted RBP	11.12	□□□□□ -0.63
PABPC4-222	ENST00000527718	HNRNPUL2	Q1KMD3	747 aa	Known RBP	11.12	□□□□□ -0.63
PABPC4-222	ENST00000527718	TRH	P20396	242 aa	Predicted RBP	11.08	□□□□□ -0.64
PABPC4-222	ENST00000527718	SHROOM4	Q9ULL8	1493 aa		11.07	□□□□□ -0.64
PABPC4-222	ENST00000527718	ABCB7	O75027	752 aa		11.05	□□□□□ -0.64
PABPC4-222	ENST00000527718	SAMD1	Q6SPF0	538 aa	Predicted RBP	11.04	□□□□□ -0.64
PABPC4-222	ENST00000527718	UNC13A	Q9UPW8	1703 aa		10.95	□□□□□ -0.66
PABPC4-222	ENST00000527718	RBM42	Q9BTD8	480 aa	Known RBP	10.94	□□□□□ -0.66
PABPC4-222	ENST00000527718	SCRIB	Q14160	1630 aa		10.87	□□□□□ -0.67
PABPC4-222	ENST00000527718	PABPN1	Q86U42	306 aa	Known RBP eCLIP	10.86	□□□□□ -0.67
PABPC4-222	ENST00000527718	BICRA	Q9NZM4	1560 aa		10.86	□□□□□ -0.67
PABPC4-222	ENST00000527718	MYCN	P04198	464 aa	Predicted RBP	10.85	□□□□□ -0.67
PABPC4-222	ENST00000527718	SUPT5H	O00267	1087 aa	Known RBP	10.79	□□□□□ -0.68
PABPC4-222	ENST00000527718	POLA2	Q14181	598 aa		10.78	□□□□□ -0.68
PABPC4-222	ENST00000527718	CHRDL2	Q6WN34	429 aa		10.78	□□□□□ -0.68
PABPC4-222	ENST00000527718	BAZ1A	Q9NRL2	1556 aa	Predicted RBP	10.65	□□□□□ -0.71
PABPC4-222	ENST00000527718	AKT1S1	Q96B36	256 aa		10.64	□□□□□ -0.71
PABPC4-222	ENST00000527718	ZBTB12	Q9Y330	459 aa	Predicted RBP	10.61	□□□□□ -0.71
PABPC4-222	ENST00000527718	RSF1	Q96T23	1441 aa	Predicted RBP	10.6	□□□□□ -0.71
PABPC4-222	ENST00000527718	ATF5	Q9Y2D1	282 aa	Predicted RBP	10.6	□□□□□ -0.71
PABPC4-222	ENST00000527718	FOXD4L1	Q9NU39	408 aa		10.59	□□□□□ -0.71
PABPC4-222	ENST00000527718	EIF4G1	Q04637	1599 aa	Known RBP	10.56	□□□□□ -0.72
PABPC4-222	ENST00000527718	SP7	Q8TDD2	431 aa	Predicted RBP	10.53	□□□□□ -0.72
PABPC4-222	ENST00000527718	REM2	Q8IYK8	340 aa	Predicted RBP	10.51	□□□□□ -0.73
PABPC4-222	ENST00000527718	SLC4A1AP	Q9BWU0	796 aa	Known RBP	10.51	□□□□□ -0.73
PABPC4-222	ENST00000527718	CC2D2A	Q9P2K1	1620 aa		10.51	□□□□□ -0.73
PABPC4-222	ENST00000527718	CECR2	Q9BXF3	1484 aa		10.48	□□□□□ -0.73
PABPC4-222	ENST00000527718	SMARCA4	P51532	1647 aa		10.47	□□□□□ -0.73
PABPC4-222	ENST00000527718	PIP4P2	Q8N4L2	257 aa		10.47	□□□□□ -0.73
PABPC4-222	ENST00000527718	MROH2B	Q7Z745	1585 aa		10.47	□□□□□ -0.73
PABPC4-222	ENST00000527718	OSCAR	Q8IYS5	282 aa		10.46	□□□□□ -0.73
PABPC4-222	ENST00000527718	SMARCA2	P51531	1590 aa		10.43	□□□□□ -0.74
PABPC4-222	ENST00000527718	FXR2	P51116	673 aa	Known RBP eCLIP	10.42	□□□□□ -0.74	3e-8	■■■□□ 18.6
PABPC4-222	ENST00000527718	TOP2A	P11388	1531 aa	Known RBP	10.4	□□□□□ -0.74
PABPC4-222	ENST00000527718	PITPNM1	O00562	1244 aa		10.4	□□□□□ -0.74
PABPC4-222	ENST00000527718	PEG3	Q9GZU2	1588 aa		10.39	□□□□□ -0.75
PABPC4-222	ENST00000527718	ZBTB22	O15209	634 aa		10.36	□□□□□ -0.75
PABPC4-222	ENST00000527718	ATXN8OS	P0DMR3	200 aa		10.35	□□□□□ -0.75
PABPC4-222	ENST00000527718	WIZ	O95785	1651 aa		10.34	□□□□□ -0.75
PABPC4-222	ENST00000527718	BAZ1B	Q9UIG0	1483 aa	Known RBP	10.33	□□□□□ -0.76
PABPC4-222	ENST00000527718	ATAD2B	Q9ULI0	1458 aa		10.33	□□□□□ -0.76
PABPC4-222	ENST00000527718	NCAPD3	P42695	1498 aa		10.32	□□□□□ -0.76
PABPC4-222	ENST00000527718	HMGXB3	Q12766	1538 aa		10.28	□□□□□ -0.76
PABPC4-222	ENST00000527718	SPDYE2B	A6NHP3	402 aa		10.27	□□□□□ -0.77
PABPC4-222	ENST00000527718	SPDYE6	P0CI01	402 aa		10.27	□□□□□ -0.77
PABPC4-222	ENST00000527718	SPDYE2	Q495Y8	402 aa		10.27	□□□□□ -0.77
PABPC4-222	ENST00000527718	TRIM41	Q8WV44	630 aa		10.27	□□□□□ -0.77
PABPC4-222	ENST00000527718	HAX1	O00165	279 aa		10.26	□□□□□ -0.77
PABPC4-222	ENST00000527718	CCDC88B	A6NC98	1476 aa		10.23	□□□□□ -0.77
PABPC4-222	ENST00000527718	EVX2	Q03828	476 aa		10.2	□□□□□ -0.78
PABPC4-222	ENST00000527718	FBLN2	P98095	1184 aa		10.16	□□□□□ -0.78
PABPC4-222	ENST00000527718	SSUH2	Q9Y2M2	353 aa		10.15	□□□□□ -0.78
PABPC4-222	ENST00000527718	MKRN4P	Q13434	485 aa	Predicted RBP	10.14	□□□□□ -0.79
PABPC4-222	ENST00000527718	SPDYE1	Q8NFV5	336 aa	Predicted RBP	10.12	□□□□□ -0.79
PABPC4-222	ENST00000527718	EEA1	Q15075	1411 aa		10.12	□□□□□ -0.79
PABPC4-222	ENST00000527718	C19orf67	A6NJJ6	358 aa		10.09	□□□□□ -0.79

Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms