RNA–Protein interactions for RNA: ENST00000477556.1

PABPC4-212, Transcript of poly(A) binding protein cytoplasmic 4, humanhuman

TSL 3

Gene PABPC4, Length 413 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PABPC4-212ENST00000477556 NISCHQ9Y2I1 1504 aa32.81■■■□□ 2.84
PABPC4-212ENST00000477556 ABCC9O60706 1549 aa29.45■■■□□ 2.31
PABPC4-212ENST00000477556 CCDC180Q9P1Z9 1646 aa29.43■■■□□ 2.3
PABPC4-212ENST00000477556 RB1CC1Q8TDY2 1594 aa28.04■■■□□ 2.08
PABPC4-212ENST00000477556 NACADO15069 1562 aa27.86■■■□□ 2.05
PABPC4-212ENST00000477556 DCAF8L2P0C7V8 631 aa27.75■■■□□ 2.03
PABPC4-212ENST00000477556 DNAJC5BQ9UF47 199 aa27.59■■■□□ 2.01
PABPC4-212ENST00000477556 MYO15BQ96JP2 1530 aa27.46■■□□□ 1.99
PABPC4-212ENST00000477556 PABPN1Q86U42 306 aaKnown RBP eCLIP27.43■■□□□ 1.98
PABPC4-212ENST00000477556 UNC13AQ9UPW8 1703 aa27.33■■□□□ 1.96
PABPC4-212ENST00000477556 ZCCHC6Q5VYS8 1495 aaKnown RBP27.19■■□□□ 1.94
PABPC4-212ENST00000477556 BICRAQ9NZM4 1560 aa27.18■■□□□ 1.94
PABPC4-212ENST00000477556 DCAF1Q9Y4B6 1507 aa27.11■■□□□ 1.93
PABPC4-212ENST00000477556 SHROOM4Q9ULL8 1493 aa26.87■■□□□ 1.89
PABPC4-212ENST00000477556 SCRIBQ14160 1630 aa26.82■■□□□ 1.88
PABPC4-212ENST00000477556 CC2D2AQ9P2K1 1620 aa26.58■■□□□ 1.85
PABPC4-212ENST00000477556 CECR2Q9BXF3 1484 aa26.55■■□□□ 1.84
PABPC4-212ENST00000477556 EIF4G1Q04637 1599 aaKnown RBP26.54■■□□□ 1.84
PABPC4-212ENST00000477556 NCAPD3P42695 1498 aa25.71■■□□□ 1.71
PABPC4-212ENST00000477556 ATAD2BQ9ULI0 1458 aa25.62■■□□□ 1.69
PABPC4-212ENST00000477556 SMARCA4P51532 1647 aa25.59■■□□□ 1.69
PABPC4-212ENST00000477556 SMARCA2P51531 1590 aa25.57■■□□□ 1.68
PABPC4-212ENST00000477556 HMGXB3Q12766 1538 aa25.51■■□□□ 1.67
PABPC4-212ENST00000477556 BAZ1AQ9NRL2 1556 aaPredicted RBP25.48■■□□□ 1.67
PABPC4-212ENST00000477556 ERCC6Q03468 1493 aa25.47■■□□□ 1.67
PABPC4-212ENST00000477556 CUX2O14529 1486 aa25.4■■□□□ 1.66
PABPC4-212ENST00000477556 DNAJC5Q9H3Z4 198 aa25.39■■□□□ 1.66
PABPC4-212ENST00000477556 BAZ1BQ9UIG0 1483 aaKnown RBP25.39■■□□□ 1.65
PABPC4-212ENST00000477556 PEG3Q9GZU2 1588 aa25.33■■□□□ 1.65
PABPC4-212ENST00000477556 NESP48681 1621 aa25.27■■□□□ 1.64
PABPC4-212ENST00000477556 MROH2BQ7Z745 1585 aa25.27■■□□□ 1.64
PABPC4-212ENST00000477556 LAMC3Q9Y6N6 1575 aa25.13■■□□□ 1.61
PABPC4-212ENST00000477556 PDS5BQ9NTI5 1447 aa25.02■■□□□ 1.6
PABPC4-212ENST00000477556 THOC2Q8NI27 1593 aaKnown RBP25.01■■□□□ 1.59
PABPC4-212ENST00000477556 WIZO95785 1651 aa24.94■■□□□ 1.58
PABPC4-212ENST00000477556 CADPSQ9ULU8 1353 aa24.94■■□□□ 1.58
PABPC4-212ENST00000477556 KIF21AQ7Z4S6 1674 aa24.94■■□□□ 1.58
PABPC4-212ENST00000477556 MRC2Q9UBG0 1479 aa24.78■■□□□ 1.56
PABPC4-212ENST00000477556 RSF1Q96T23 1441 aaPredicted RBP24.76■■□□□ 1.55
PABPC4-212ENST00000477556 WDR62O43379 1518 aa24.7■■□□□ 1.54
PABPC4-212ENST00000477556 CEP164Q9UPV0 1460 aa24.69■■□□□ 1.54
PABPC4-212ENST00000477556 TOP2AP11388 1531 aaKnown RBP24.66■■□□□ 1.54
PABPC4-212ENST00000477556 CFTRP13569 1480 aa24.64■■□□□ 1.54
PABPC4-212ENST00000477556 FANCD2Q9BXW9 1451 aa24.64■■□□□ 1.54
PABPC4-212ENST00000477556 URB2Q14146 1524 aaKnown RBP24.42■■□□□ 1.5
PABPC4-212ENST00000477556 CCDC88BA6NC98 1476 aa24.38■■□□□ 1.49
PABPC4-212ENST00000477556 PRDM2Q13029 1718 aa24.35■■□□□ 1.49
PABPC4-212ENST00000477556 TRIM41Q8WV44 630 aa24.3■■□□□ 1.48
PABPC4-212ENST00000477556 OSCARQ8IYS5 282 aa24.27■■□□□ 1.48
PABPC4-212ENST00000477556 IFT140Q96RY7 1462 aa24.19■■□□□ 1.46
PABPC4-212ENST00000477556 TOPBP1Q92547 1522 aa24.17■■□□□ 1.46
PABPC4-212ENST00000477556 ABCC8Q09428 1581 aa24.16■■□□□ 1.46
PABPC4-212ENST00000477556 ZNF608Q9ULD9 1512 aaPredicted RBP24.12■■□□□ 1.45
PABPC4-212ENST00000477556 DNMBPQ6XZF7 1577 aa24.09■■□□□ 1.45
PABPC4-212ENST00000477556 EIF4G3O43432 1585 aaKnown RBP23.99■■□□□ 1.43
PABPC4-212ENST00000477556 TARBP1Q13395 1621 aaKnown RBP23.93■■□□□ 1.42
PABPC4-212ENST00000477556 POLA1P09884 1462 aaPredicted RBP23.93■■□□□ 1.42
PABPC4-212ENST00000477556 AQRO60306 1485 aaKnown RBP eCLIP23.91■■□□□ 1.428e-11■■■■■ 43.3
PABPC4-212ENST00000477556 RIMBP3CA6NJZ7 1639 aa23.89■■□□□ 1.42
PABPC4-212ENST00000477556 RIMBP3BA6NNM3 1639 aa23.89■■□□□ 1.42
PABPC4-212ENST00000477556 RIMBP3Q9UFD9 1639 aa23.89■■□□□ 1.42
PABPC4-212ENST00000477556 ARHGEF11O15085 1522 aa23.84■■□□□ 1.41
PABPC4-212ENST00000477556 SOGA1O94964 1423 aa23.84■■□□□ 1.41
PABPC4-212ENST00000477556 RAD54L2Q9Y4B4 1467 aa23.83■■□□□ 1.41
PABPC4-212ENST00000477556 FBLN2P98095 1184 aa23.81■■□□□ 1.4
PABPC4-212ENST00000477556 CHD1O14646 1710 aa23.79■■□□□ 1.4
PABPC4-212ENST00000477556 TDRD9Q8NDG6 1382 aaKnown RBP23.78■■□□□ 1.4
PABPC4-212ENST00000477556 FGD5Q6ZNL6 1462 aa23.78■■□□□ 1.4
PABPC4-212ENST00000477556 CUX1P39880 1505 aa23.74■■□□□ 1.39
PABPC4-212ENST00000477556 WDR97A6NE52 1622 aa23.73■■□□□ 1.39
PABPC4-212ENST00000477556 CYB5RLQ6IPT4 315 aa23.7■■□□□ 1.38
PABPC4-212ENST00000477556 SUPT5HO00267 1087 aaKnown RBP23.69■■□□□ 1.38
PABPC4-212ENST00000477556 SNAPC4Q5SXM2 1469 aa23.68■■□□□ 1.38
PABPC4-212ENST00000477556 GRIN2BQ13224 1484 aa23.63■■□□□ 1.37
PABPC4-212ENST00000477556 MAGI1Q96QZ7 1491 aaPredicted RBP23.63■■□□□ 1.37
PABPC4-212ENST00000477556 CHMP7Q8WUX9 453 aaPredicted RBP23.63■■□□□ 1.37
PABPC4-212ENST00000477556 ARAP1Q96P48 1450 aa23.6■■□□□ 1.37
PABPC4-212ENST00000477556 SYNJ1O43426 1573 aa23.56■■□□□ 1.36
PABPC4-212ENST00000477556 SYNJ2O15056 1496 aa23.55■■□□□ 1.36
PABPC4-212ENST00000477556 GAPVD1Q14C86 1478 aa23.55■■□□□ 1.36
PABPC4-212ENST00000477556 CLASP1Q7Z460 1538 aa23.54■■□□□ 1.36
PABPC4-212ENST00000477556 ABCA10Q8WWZ4 1543 aa23.51■■□□□ 1.35
PABPC4-212ENST00000477556 PBRM1Q86U86 1689 aa23.49■■□□□ 1.35
PABPC4-212ENST00000477556 TRHP20396 242 aaPredicted RBP23.46■■□□□ 1.35
PABPC4-212ENST00000477556 ABCA5Q8WWZ7 1642 aa23.45■■□□□ 1.34
PABPC4-212ENST00000477556 WRNQ14191 1432 aaPredicted RBP eCLIP23.44■■□□□ 1.34
PABPC4-212ENST00000477556 TOP2BQ02880 1626 aa23.37■■□□□ 1.33
PABPC4-212ENST00000477556 BIVM-ERCC5R4GMW8 1640 aa23.36■■□□□ 1.33
PABPC4-212ENST00000477556 GRIN2AQ12879 1464 aa23.32■■□□□ 1.32
PABPC4-212ENST00000477556 ADAMTS12P58397 1594 aa23.29■■□□□ 1.32
PABPC4-212ENST00000477556 FHAD1B1AJZ9 1412 aa23.25■■□□□ 1.31
PABPC4-212ENST00000477556 NUP160Q12769 1436 aa23.24■■□□□ 1.31
PABPC4-212ENST00000477556 ERICH3Q5RHP9 1530 aa23.22■■□□□ 1.31
PABPC4-212ENST00000477556 CEP170Q5SW79 1584 aa23.21■■□□□ 1.31
PABPC4-212ENST00000477556 ERCC6L2Q5T890 1561 aa23.15■■□□□ 1.3
PABPC4-212ENST00000477556 SHROOM2Q13796 1616 aa23.1■■□□□ 1.29
PABPC4-212ENST00000477556 PRG4Q92954 1404 aaPredicted RBP23.02■■□□□ 1.28
PABPC4-212ENST00000477556 JPH4Q96JJ6 628 aa23.02■■□□□ 1.28
PABPC4-212ENST00000477556 KIF27Q86VH2 1401 aa22.96■■□□□ 1.27
PABPC4-212ENST00000477556 RUSC2Q8N2Y8 1516 aa22.95■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms