RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 NISCHQ9Y2I1 1504 aa39.77■■■■□ 3.96
TRIM28-213ENST00000598355 CCDC180Q9P1Z9 1646 aa35.54■■■■□ 3.28
TRIM28-213ENST00000598355 ABCC9O60706 1549 aa34.6■■■■□ 3.13
TRIM28-213ENST00000598355 RB1CC1Q8TDY2 1594 aa33.36■■■□□ 2.93
TRIM28-213ENST00000598355 NACADO15069 1562 aa33.33■■■□□ 2.93
TRIM28-213ENST00000598355 MYO15BQ96JP2 1530 aa33.2■■■□□ 2.91
TRIM28-213ENST00000598355 ZCCHC6Q5VYS8 1495 aaKnown RBP33.18■■■□□ 2.9
TRIM28-213ENST00000598355 DCAF1Q9Y4B6 1507 aa33.01■■■□□ 2.87
TRIM28-213ENST00000598355 DCAF8L2P0C7V8 631 aa32.86■■■□□ 2.85
TRIM28-213ENST00000598355 UNC13AQ9UPW8 1703 aa32.75■■■□□ 2.83
TRIM28-213ENST00000598355 BICRAQ9NZM4 1560 aa32.43■■■□□ 2.78
TRIM28-213ENST00000598355 SCRIBQ14160 1630 aa32.26■■■□□ 2.75
TRIM28-213ENST00000598355 PABPN1Q86U42 306 aaKnown RBP eCLIP32.19■■■□□ 2.744e-7■■□□□ 14.5
TRIM28-213ENST00000598355 SHROOM4Q9ULL8 1493 aa32.12■■■□□ 2.73
TRIM28-213ENST00000598355 DNAJC5BQ9UF47 199 aa31.78■■■□□ 2.68
TRIM28-213ENST00000598355 EIF4G1Q04637 1599 aaKnown RBP31.52■■■□□ 2.64
TRIM28-213ENST00000598355 CC2D2AQ9P2K1 1620 aa31.4■■■□□ 2.62
TRIM28-213ENST00000598355 CECR2Q9BXF3 1484 aa31.12■■■□□ 2.57
TRIM28-213ENST00000598355 SMARCA4P51532 1647 aa30.92■■■□□ 2.54
TRIM28-213ENST00000598355 BAZ1AQ9NRL2 1556 aaPredicted RBP30.84■■■□□ 2.53
TRIM28-213ENST00000598355 NCAPD3P42695 1498 aa30.72■■■□□ 2.51
TRIM28-213ENST00000598355 ATAD2BQ9ULI0 1458 aa30.71■■■□□ 2.51
TRIM28-213ENST00000598355 SMARCA2P51531 1590 aa30.71■■■□□ 2.51
TRIM28-213ENST00000598355 PEG3Q9GZU2 1588 aa30.7■■■□□ 2.5
TRIM28-213ENST00000598355 HMGXB3Q12766 1538 aa30.64■■■□□ 2.5
TRIM28-213ENST00000598355 MROH2BQ7Z745 1585 aa30.63■■■□□ 2.49
TRIM28-213ENST00000598355 BAZ1BQ9UIG0 1483 aaKnown RBP30.42■■■□□ 2.46
TRIM28-213ENST00000598355 WIZO95785 1651 aa30.31■■■□□ 2.44
TRIM28-213ENST00000598355 RSF1Q96T23 1441 aaPredicted RBP30.22■■■□□ 2.43
TRIM28-213ENST00000598355 TOP2AP11388 1531 aaKnown RBP30.01■■■□□ 2.4
TRIM28-213ENST00000598355 LAMC3Q9Y6N6 1575 aa29.97■■■□□ 2.39
TRIM28-213ENST00000598355 NESP48681 1621 aa29.95■■■□□ 2.38
TRIM28-213ENST00000598355 ERCC6Q03468 1493 aa29.8■■■□□ 2.36
TRIM28-213ENST00000598355 CADPSQ9ULU8 1353 aa29.75■■■□□ 2.35
TRIM28-213ENST00000598355 KIF21AQ7Z4S6 1674 aa29.72■■■□□ 2.35
TRIM28-213ENST00000598355 THOC2Q8NI27 1593 aaKnown RBP29.67■■■□□ 2.34
TRIM28-213ENST00000598355 CUX2O14529 1486 aa29.65■■■□□ 2.34
TRIM28-213ENST00000598355 PDS5BQ9NTI5 1447 aa29.64■■■□□ 2.34
TRIM28-213ENST00000598355 CFTRP13569 1480 aa29.63■■■□□ 2.33
TRIM28-213ENST00000598355 CCDC88BA6NC98 1476 aa29.58■■■□□ 2.33
TRIM28-213ENST00000598355 PRDM2Q13029 1718 aa29.58■■■□□ 2.33
TRIM28-213ENST00000598355 FANCD2Q9BXW9 1451 aa29.43■■■□□ 2.3
TRIM28-213ENST00000598355 CEP164Q9UPV0 1460 aa29.42■■■□□ 2.3
TRIM28-213ENST00000598355 MRC2Q9UBG0 1479 aa29.41■■■□□ 2.3
TRIM28-213ENST00000598355 WDR62O43379 1518 aa29.39■■■□□ 2.3
TRIM28-213ENST00000598355 URB2Q14146 1524 aaKnown RBP29.19■■■□□ 2.26
TRIM28-213ENST00000598355 SUPT5HO00267 1087 aaKnown RBP29.13■■■□□ 2.25
TRIM28-213ENST00000598355 TOPBP1Q92547 1522 aa28.99■■■□□ 2.23
TRIM28-213ENST00000598355 DNMBPQ6XZF7 1577 aa28.99■■■□□ 2.23
TRIM28-213ENST00000598355 ABCC8Q09428 1581 aa28.96■■■□□ 2.23
TRIM28-213ENST00000598355 IFT140Q96RY7 1462 aa28.81■■■□□ 2.2
TRIM28-213ENST00000598355 TARBP1Q13395 1621 aaKnown RBP28.76■■■□□ 2.19
TRIM28-213ENST00000598355 CUX1P39880 1505 aa28.75■■■□□ 2.19
TRIM28-213ENST00000598355 POLA1P09884 1462 aaPredicted RBP28.74■■■□□ 2.19
TRIM28-213ENST00000598355 DNAJC5Q9H3Z4 198 aa28.68■■■□□ 2.18
TRIM28-213ENST00000598355 ZNF608Q9ULD9 1512 aaPredicted RBP28.67■■■□□ 2.18
TRIM28-213ENST00000598355 EIF4G3O43432 1585 aaKnown RBP28.65■■■□□ 2.18
TRIM28-213ENST00000598355 FGD5Q6ZNL6 1462 aa28.64■■■□□ 2.17
TRIM28-213ENST00000598355 WDR97A6NE52 1622 aa28.58■■■□□ 2.17
TRIM28-213ENST00000598355 BIVM-ERCC5R4GMW8 1640 aa28.58■■■□□ 2.17
TRIM28-213ENST00000598355 RAD54L2Q9Y4B4 1467 aa28.54■■■□□ 2.16
TRIM28-213ENST00000598355 TOP2BQ02880 1626 aa28.53■■■□□ 2.16
TRIM28-213ENST00000598355 SOGA1O94964 1423 aa28.52■■■□□ 2.16
TRIM28-213ENST00000598355 SYNJ1O43426 1573 aa28.5■■■□□ 2.15
TRIM28-213ENST00000598355 WRNQ14191 1432 aaPredicted RBP eCLIP28.47■■■□□ 2.15
TRIM28-213ENST00000598355 AQRO60306 1485 aaKnown RBP eCLIP28.44■■■□□ 2.147e-17■■■■□ 23.7
TRIM28-213ENST00000598355 ABCA10Q8WWZ4 1543 aa28.4■■■□□ 2.14
TRIM28-213ENST00000598355 ABCA5Q8WWZ7 1642 aa28.36■■■□□ 2.13
TRIM28-213ENST00000598355 TDRD9Q8NDG6 1382 aaKnown RBP28.34■■■□□ 2.13
TRIM28-213ENST00000598355 PBRM1Q86U86 1689 aa28.32■■■□□ 2.12
TRIM28-213ENST00000598355 CHD1O14646 1710 aa28.32■■■□□ 2.12
TRIM28-213ENST00000598355 GRIN2BQ13224 1484 aa28.27■■■□□ 2.12
TRIM28-213ENST00000598355 GAPVD1Q14C86 1478 aa28.24■■■□□ 2.11
TRIM28-213ENST00000598355 MAGI1Q96QZ7 1491 aaPredicted RBP28.24■■■□□ 2.11
TRIM28-213ENST00000598355 SNAPC4Q5SXM2 1469 aa28.23■■■□□ 2.11
TRIM28-213ENST00000598355 OSCARQ8IYS5 282 aa28.2■■■□□ 2.1
TRIM28-213ENST00000598355 SYNJ2O15056 1496 aa28.11■■■□□ 2.09
TRIM28-213ENST00000598355 ERICH3Q5RHP9 1530 aa28.08■■■□□ 2.08
TRIM28-213ENST00000598355 ADAMTS12P58397 1594 aa28.07■■■□□ 2.08
TRIM28-213ENST00000598355 CLASP1Q7Z460 1538 aa28.02■■■□□ 2.08
TRIM28-213ENST00000598355 RIMBP3CA6NJZ7 1639 aa27.96■■■□□ 2.07
TRIM28-213ENST00000598355 RIMBP3BA6NNM3 1639 aa27.96■■■□□ 2.07
TRIM28-213ENST00000598355 RIMBP3Q9UFD9 1639 aa27.96■■■□□ 2.07
TRIM28-213ENST00000598355 FBLN2P98095 1184 aa27.93■■■□□ 2.06
TRIM28-213ENST00000598355 GRIN2AQ12879 1464 aa27.93■■■□□ 2.06
TRIM28-213ENST00000598355 ARHGEF11O15085 1522 aa27.92■■■□□ 2.06
TRIM28-213ENST00000598355 FHAD1B1AJZ9 1412 aa27.92■■■□□ 2.06
TRIM28-213ENST00000598355 CHMP7Q8WUX9 453 aaPredicted RBP27.91■■■□□ 2.06
TRIM28-213ENST00000598355 KIF27Q86VH2 1401 aa27.86■■■□□ 2.05
TRIM28-213ENST00000598355 CUL7Q14999 1698 aa27.84■■■□□ 2.05
TRIM28-213ENST00000598355 NUP160Q12769 1436 aa27.84■■■□□ 2.05
TRIM28-213ENST00000598355 CEP170Q5SW79 1584 aa27.83■■■□□ 2.05
TRIM28-213ENST00000598355 IGF1RP08069 1367 aa27.75■■■□□ 2.03
TRIM28-213ENST00000598355 SHROOM2Q13796 1616 aa27.72■■■□□ 2.03
TRIM28-213ENST00000598355 ARAP1Q96P48 1450 aa27.7■■■□□ 2.03
TRIM28-213ENST00000598355 RUSC2Q8N2Y8 1516 aa27.68■■■□□ 2.02
TRIM28-213ENST00000598355 CARMIL1Q5VZK9 1371 aa27.57■■■□□ 2
TRIM28-213ENST00000598355 TRIM41Q8WV44 630 aa27.56■■■□□ 2
TRIM28-213ENST00000598355 ERCC6L2Q5T890 1561 aa27.56■■■□□ 2
TRIM28-213ENST00000598355 KIAA0586Q9BVV6 1533 aa27.5■■□□□ 1.99
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms