RNA–Protein interactions for RNA: ENST00000537120.5

DDB1-208, Transcript of damage specific DNA binding protein 1, humanhuman

TSL 2

Gene DDB1, Length 1,215 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDB1-208ENST00000537120 NISCHQ9Y2I1 1504 aa20.44■□□□□ 0.86
DDB1-208ENST00000537120 ABCC9O60706 1549 aa18.26■□□□□ 0.51
DDB1-208ENST00000537120 CCDC180Q9P1Z9 1646 aa18.23■□□□□ 0.51
DDB1-208ENST00000537120 DCAF8L2P0C7V8 631 aa17.52■□□□□ 0.4
DDB1-208ENST00000537120 RB1CC1Q8TDY2 1594 aa17.38■□□□□ 0.37
DDB1-208ENST00000537120 NACADO15069 1562 aa17.27■□□□□ 0.35
DDB1-208ENST00000537120 PABPN1Q86U42 306 aaKnown RBP eCLIP17.1■□□□□ 0.33
DDB1-208ENST00000537120 DNAJC5BQ9UF47 199 aa17.06■□□□□ 0.32
DDB1-208ENST00000537120 MYO15BQ96JP2 1530 aa17■□□□□ 0.31
DDB1-208ENST00000537120 AEBP2Q6ZN18 517 aaPredicted RBP16.98■□□□□ 0.31
DDB1-208ENST00000537120 ZCCHC6Q5VYS8 1495 aaKnown RBP16.92■□□□□ 0.3
DDB1-208ENST00000537120 UNC13AQ9UPW8 1703 aa16.9■□□□□ 0.3
DDB1-208ENST00000537120 DCAF1Q9Y4B6 1507 aa16.84■□□□□ 0.29
DDB1-208ENST00000537120 BICRAQ9NZM4 1560 aa16.78■□□□□ 0.28
DDB1-208ENST00000537120 SCRIBQ14160 1630 aa16.7■□□□□ 0.26
DDB1-208ENST00000537120 CHIC1Q5VXU3 224 aa16.61■□□□□ 0.25
DDB1-208ENST00000537120 SHROOM4Q9ULL8 1493 aa16.56■□□□□ 0.24
DDB1-208ENST00000537120 CC2D2AQ9P2K1 1620 aa16.43■□□□□ 0.22
DDB1-208ENST00000537120 CECR2Q9BXF3 1484 aa16.42■□□□□ 0.22
DDB1-208ENST00000537120 EIF4G1Q04637 1599 aaKnown RBP16.41■□□□□ 0.22
DDB1-208ENST00000537120 NCAPD3P42695 1498 aa15.95■□□□□ 0.14
DDB1-208ENST00000537120 ATAD2BQ9ULI0 1458 aa15.91■□□□□ 0.14
DDB1-208ENST00000537120 SMARCA4P51532 1647 aa15.9■□□□□ 0.14
DDB1-208ENST00000537120 SMARCA2P51531 1590 aa15.88■□□□□ 0.13
DDB1-208ENST00000537120 BAZ1AQ9NRL2 1556 aaPredicted RBP15.87■□□□□ 0.13
DDB1-208ENST00000537120 DNAJC5Q9H3Z4 198 aa15.84■□□□□ 0.13
DDB1-208ENST00000537120 BAZ1BQ9UIG0 1483 aaKnown RBP15.81■□□□□ 0.12
DDB1-208ENST00000537120 ERCC6Q03468 1493 aa15.79■□□□□ 0.12
DDB1-208ENST00000537120 HMGXB3Q12766 1538 aa15.78■□□□□ 0.12
DDB1-208ENST00000537120 MROH2BQ7Z745 1585 aa15.75■□□□□ 0.11
DDB1-208ENST00000537120 PEG3Q9GZU2 1588 aa15.69■□□□□ 0.1
DDB1-208ENST00000537120 NESP48681 1621 aa15.68■□□□□ 0.1
DDB1-208ENST00000537120 CUX2O14529 1486 aa15.63■□□□□ 0.09
DDB1-208ENST00000537120 WIZO95785 1651 aa15.58■□□□□ 0.08
DDB1-208ENST00000537120 LAMC3Q9Y6N6 1575 aa15.56■□□□□ 0.08
DDB1-208ENST00000537120 PDS5BQ9NTI5 1447 aa15.55■□□□□ 0.08
DDB1-208ENST00000537120 CADPSQ9ULU8 1353 aa15.52■□□□□ 0.08
DDB1-208ENST00000537120 RSF1Q96T23 1441 aaPredicted RBP15.5■□□□□ 0.07
DDB1-208ENST00000537120 KIF21AQ7Z4S6 1674 aa15.43■□□□□ 0.06
DDB1-208ENST00000537120 THOC2Q8NI27 1593 aaKnown RBP15.4■□□□□ 0.06
DDB1-208ENST00000537120 TOP2AP11388 1531 aaKnown RBP15.37■□□□□ 0.05
DDB1-208ENST00000537120 MRC2Q9UBG0 1479 aa15.35■□□□□ 0.05
DDB1-208ENST00000537120 FANCD2Q9BXW9 1451 aa15.33■□□□□ 0.04
DDB1-208ENST00000537120 CEP164Q9UPV0 1460 aa15.33■□□□□ 0.04
DDB1-208ENST00000537120 CFTRP13569 1480 aa15.31■□□□□ 0.04
DDB1-208ENST00000537120 WDR62O43379 1518 aa15.25■□□□□ 0.03
DDB1-208ENST00000537120 CCDC88BA6NC98 1476 aa15.25■□□□□ 0.03
DDB1-208ENST00000537120 URB2Q14146 1524 aaKnown RBP15.15■□□□□ 0.02
DDB1-208ENST00000537120 SUPT5HO00267 1087 aaKnown RBP15.11■□□□□ 0.01
DDB1-208ENST00000537120 PRDM2Q13029 1718 aa15.1■□□□□ 0.01
DDB1-208ENST00000537120 OSCARQ8IYS5 282 aa15.09■□□□□ 0.01
DDB1-208ENST00000537120 TRIM41Q8WV44 630 aa15.07■□□□□ 0
DDB1-208ENST00000537120 ABCC8Q09428 1581 aa15.05■□□□□ -0
DDB1-208ENST00000537120 TOPBP1Q92547 1522 aa15.02■□□□□ -0
DDB1-208ENST00000537120 IFT140Q96RY7 1462 aa15.02■□□□□ -0
DDB1-208ENST00000537120 DNMBPQ6XZF7 1577 aa14.96□□□□□ -0.01
DDB1-208ENST00000537120 ZNF608Q9ULD9 1512 aaPredicted RBP14.96□□□□□ -0.02
DDB1-208ENST00000537120 FBLN2P98095 1184 aa14.94□□□□□ -0.02
DDB1-208ENST00000537120 AQRO60306 1485 aaKnown RBP eCLIP14.9□□□□□ -0.021e-6■■■□□ 15
DDB1-208ENST00000537120 SOGA1O94964 1423 aa14.9□□□□□ -0.02
DDB1-208ENST00000537120 POLA1P09884 1462 aaPredicted RBP14.87□□□□□ -0.03
DDB1-208ENST00000537120 RAD54L2Q9Y4B4 1467 aa14.86□□□□□ -0.03
DDB1-208ENST00000537120 TDRD9Q8NDG6 1382 aaKnown RBP14.85□□□□□ -0.03
DDB1-208ENST00000537120 EIF4G3O43432 1585 aaKnown RBP14.84□□□□□ -0.03
DDB1-208ENST00000537120 TARBP1Q13395 1621 aaKnown RBP14.83□□□□□ -0.04
DDB1-208ENST00000537120 FGD5Q6ZNL6 1462 aa14.82□□□□□ -0.04
DDB1-208ENST00000537120 CHMP7Q8WUX9 453 aaPredicted RBP14.81□□□□□ -0.04
DDB1-208ENST00000537120 CUX1P39880 1505 aa14.78□□□□□ -0.04
DDB1-208ENST00000537120 CYB5RLQ6IPT4 315 aa14.75□□□□□ -0.05
DDB1-208ENST00000537120 CHD1O14646 1710 aa14.72□□□□□ -0.05
DDB1-208ENST00000537120 PHF23Q9BUL5 403 aaPredicted RBP14.72□□□□□ -0.05
DDB1-208ENST00000537120 RIMBP3CA6NJZ7 1639 aa14.72□□□□□ -0.05
DDB1-208ENST00000537120 RIMBP3BA6NNM3 1639 aa14.72□□□□□ -0.05
DDB1-208ENST00000537120 RIMBP3Q9UFD9 1639 aa14.72□□□□□ -0.05
DDB1-208ENST00000537120 SNAPC4Q5SXM2 1469 aa14.71□□□□□ -0.05
DDB1-208ENST00000537120 GRIN2BQ13224 1484 aa14.7□□□□□ -0.06
DDB1-208ENST00000537120 ARHGEF11O15085 1522 aa14.69□□□□□ -0.06
DDB1-208ENST00000537120 WDR97A6NE52 1622 aa14.68□□□□□ -0.06
DDB1-208ENST00000537120 GAPVD1Q14C86 1478 aa14.68□□□□□ -0.06
DDB1-208ENST00000537120 WRNQ14191 1432 aaPredicted RBP eCLIP14.67□□□□□ -0.06
DDB1-208ENST00000537120 MAGI1Q96QZ7 1491 aaPredicted RBP14.67□□□□□ -0.06
DDB1-208ENST00000537120 ABCA10Q8WWZ4 1543 aa14.63□□□□□ -0.07
DDB1-208ENST00000537120 SYNJ2O15056 1496 aa14.63□□□□□ -0.07
DDB1-208ENST00000537120 SYNJ1O43426 1573 aa14.61□□□□□ -0.07
DDB1-208ENST00000537120 TRHP20396 242 aaPredicted RBP14.61□□□□□ -0.07
DDB1-208ENST00000537120 PBRM1Q86U86 1689 aa14.58□□□□□ -0.07
DDB1-208ENST00000537120 TOP2BQ02880 1626 aa14.58□□□□□ -0.08
DDB1-208ENST00000537120 ARAP1Q96P48 1450 aa14.55□□□□□ -0.08
DDB1-208ENST00000537120 BIVM-ERCC5R4GMW8 1640 aa14.55□□□□□ -0.08
DDB1-208ENST00000537120 ABCA5Q8WWZ7 1642 aa14.54□□□□□ -0.08
DDB1-208ENST00000537120 CLASP1Q7Z460 1538 aa14.52□□□□□ -0.08
DDB1-208ENST00000537120 FHAD1B1AJZ9 1412 aa14.49□□□□□ -0.09
DDB1-208ENST00000537120 GRIN2AQ12879 1464 aa14.49□□□□□ -0.09
DDB1-208ENST00000537120 ERICH3Q5RHP9 1530 aa14.45□□□□□ -0.1
DDB1-208ENST00000537120 ADAMTS12P58397 1594 aa14.44□□□□□ -0.1
DDB1-208ENST00000537120 JPH4Q96JJ6 628 aa14.42□□□□□ -0.1
DDB1-208ENST00000537120 NUP160Q12769 1436 aa14.41□□□□□ -0.1
DDB1-208ENST00000537120 KIF27Q86VH2 1401 aa14.4□□□□□ -0.1
DDB1-208ENST00000537120 CEP170Q5SW79 1584 aa14.39□□□□□ -0.11
DDB1-208ENST00000537120 IGF1RP08069 1367 aa14.36□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 54 ms