RNA–Protein interactions for RNA: ENST00000372857.7

PABPC4-202, Transcript of poly(A) binding protein cytoplasmic 4, humanhuman

TSL 1 (best) BASIC

Gene PABPC4, Length 3,048 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PABPC4-202ENST00000372857 NISCHQ9Y2I1 1504 aa31.08■■■□□ 2.57
PABPC4-202ENST00000372857 SHROOM4Q9ULL8 1493 aa27.28■■□□□ 1.96
PABPC4-202ENST00000372857 SUPT5HO00267 1087 aaKnown RBP26.8■■□□□ 1.88
PABPC4-202ENST00000372857 DCAF8L2P0C7V8 631 aa26.78■■□□□ 1.88
PABPC4-202ENST00000372857 HRCP23327 699 aa26.65■■□□□ 1.86
PABPC4-202ENST00000372857 MYO15BQ96JP2 1530 aa26.36■■□□□ 1.81
PABPC4-202ENST00000372857 PCGF6Q9BYE7 350 aa26.31■■□□□ 1.8
PABPC4-202ENST00000372857 PPARGC1BQ86YN6 1023 aaKnown RBP26.23■■□□□ 1.79
PABPC4-202ENST00000372857 CHIC1Q5VXU3 224 aa26.21■■□□□ 1.79
PABPC4-202ENST00000372857 ZCCHC6Q5VYS8 1495 aaKnown RBP26.21■■□□□ 1.79
PABPC4-202ENST00000372857 CCDC180Q9P1Z9 1646 aa26.06■■□□□ 1.76
PABPC4-202ENST00000372857 LOC105371045A0A1W2PR82 267 aa25.66■■□□□ 1.7
PABPC4-202ENST00000372857 DCAF1Q9Y4B6 1507 aa25.62■■□□□ 1.69
PABPC4-202ENST00000372857 TRIM26Q12899 539 aaPredicted RBP25.43■■□□□ 1.66
PABPC4-202ENST00000372857 PELP1Q8IZL8 1130 aaKnown RBP25.38■■□□□ 1.65
PABPC4-202ENST00000372857 SCAF1Q9H7N4 1312 aaKnown RBP25.12■■□□□ 1.61
PABPC4-202ENST00000372857 ZEB1P37275 1124 aaPredicted RBP25.08■■□□□ 1.61
PABPC4-202ENST00000372857 SCRIBQ14160 1630 aa25.04■■□□□ 1.6
PABPC4-202ENST00000372857 ABCC9O60706 1549 aa25.04■■□□□ 1.6
PABPC4-202ENST00000372857 EHMT2Q96KQ7 1210 aa24.94■■□□□ 1.58
PABPC4-202ENST00000372857 FAM9AQ8IZU1 332 aaPredicted RBP24.83■■□□□ 1.56
PABPC4-202ENST00000372857 TRIM41Q8WV44 630 aa24.75■■□□□ 1.55
PABPC4-202ENST00000372857 RSF1Q96T23 1441 aaPredicted RBP24.74■■□□□ 1.55
PABPC4-202ENST00000372857 CECR2Q9BXF3 1484 aa24.57■■□□□ 1.52
PABPC4-202ENST00000372857 ACIN1Q9UKV3 1341 aaKnown RBP24.54■■□□□ 1.52
PABPC4-202ENST00000372857 NEUROD1Q13562 356 aa24.53■■□□□ 1.52
PABPC4-202ENST00000372857 RB1CC1Q8TDY2 1594 aa24.5■■□□□ 1.51
PABPC4-202ENST00000372857 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.48■■□□□ 1.51
PABPC4-202ENST00000372857 MYT1Q01538 1121 aa24.44■■□□□ 1.5
PABPC4-202ENST00000372857 CCER1Q8TC90 406 aaPredicted RBP24.4■■□□□ 1.5
PABPC4-202ENST00000372857 GTF3C3Q9Y5Q9 886 aa24.38■■□□□ 1.49
PABPC4-202ENST00000372857 MROH2BQ7Z745 1585 aa24.34■■□□□ 1.49
PABPC4-202ENST00000372857 NACADO15069 1562 aa24.29■■□□□ 1.48
PABPC4-202ENST00000372857 DIEXFQ68CQ4 756 aaKnown RBP24.29■■□□□ 1.48
PABPC4-202ENST00000372857 CENPBP07199 599 aaPredicted RBP24.25■■□□□ 1.47
PABPC4-202ENST00000372857 WIZO95785 1651 aa24.19■■□□□ 1.46
PABPC4-202ENST00000372857 PABPN1Q86U42 306 aaKnown RBP eCLIP24.19■■□□□ 1.46
PABPC4-202ENST00000372857 TTBK1Q5TCY1 1321 aaPredicted RBP24.15■■□□□ 1.46
PABPC4-202ENST00000372857 YTHDC1Q96MU7 727 aaKnown RBP23.97■■□□□ 1.43
PABPC4-202ENST00000372857 ZNF316A6NFI3 1004 aaPredicted RBP23.84■■□□□ 1.41
PABPC4-202ENST00000372857 BAZ1AQ9NRL2 1556 aaPredicted RBP23.81■■□□□ 1.4
PABPC4-202ENST00000372857 ABCC8Q09428 1581 aa23.8■■□□□ 1.4
PABPC4-202ENST00000372857 CCDC88BA6NC98 1476 aa23.72■■□□□ 1.39
PABPC4-202ENST00000372857 MIER1Q8N108 512 aa23.71■■□□□ 1.39
PABPC4-202ENST00000372857 WRNQ14191 1432 aaPredicted RBP eCLIP23.71■■□□□ 1.39
PABPC4-202ENST00000372857 CEP162Q5TB80 1403 aa23.7■■□□□ 1.38
PABPC4-202ENST00000372857 SMARCA4P51532 1647 aa23.65■■□□□ 1.38
PABPC4-202ENST00000372857 UNC13AQ9UPW8 1703 aa23.62■■□□□ 1.37
PABPC4-202ENST00000372857 EIF4G1Q04637 1599 aaKnown RBP23.6■■□□□ 1.37
PABPC4-202ENST00000372857 SOGA1O94964 1423 aa23.6■■□□□ 1.37
PABPC4-202ENST00000372857 UBTFP17480 764 aaKnown RBP23.59■■□□□ 1.37
PABPC4-202ENST00000372857 TOP2AP11388 1531 aaKnown RBP23.59■■□□□ 1.37
PABPC4-202ENST00000372857 RANGAP1P46060 587 aaPredicted RBP23.58■■□□□ 1.37
PABPC4-202ENST00000372857 SMARCA2P51531 1590 aa23.54■■□□□ 1.36
PABPC4-202ENST00000372857 HNRNPUL2Q1KMD3 747 aaKnown RBP23.53■■□□□ 1.36
PABPC4-202ENST00000372857 RUSC2Q8N2Y8 1516 aa23.53■■□□□ 1.36
PABPC4-202ENST00000372857 TNIKQ9UKE5 1360 aa23.5■■□□□ 1.35
PABPC4-202ENST00000372857 BICRAQ9NZM4 1560 aa23.43■■□□□ 1.34
PABPC4-202ENST00000372857 CSRNP3Q8WYN3 585 aa23.41■■□□□ 1.34
PABPC4-202ENST00000372857 GOLGA3Q08378 1498 aa23.26■■□□□ 1.31
PABPC4-202ENST00000372857 EEA1Q15075 1411 aa23.24■■□□□ 1.31
PABPC4-202ENST00000372857 SUPT16HQ9Y5B9 1047 aaKnown RBP23.23■■□□□ 1.31
PABPC4-202ENST00000372857 ATAD2BQ9ULI0 1458 aa23.18■■□□□ 1.3
PABPC4-202ENST00000372857 BAZ1BQ9UIG0 1483 aaKnown RBP23.17■■□□□ 1.3
PABPC4-202ENST00000372857 APLP2Q06481 763 aa23.11■■□□□ 1.29
PABPC4-202ENST00000372857 CLIP1P30622 1438 aa23.1■■□□□ 1.29
PABPC4-202ENST00000372857 SYNJ1O43426 1573 aa23.1■■□□□ 1.29
PABPC4-202ENST00000372857 TSHZ2Q9NRE2 1034 aa23.07■■□□□ 1.28
PABPC4-202ENST00000372857 CLSPNQ9HAW4 1339 aa23.05■■□□□ 1.28
PABPC4-202ENST00000372857 VPS8Q8N3P4 1428 aa23.03■■□□□ 1.28
PABPC4-202ENST00000372857 CEP164Q9UPV0 1460 aa23.02■■□□□ 1.28
PABPC4-202ENST00000372857 BCL11AQ9H165 835 aa22.98■■□□□ 1.27
PABPC4-202ENST00000372857 ANP32EQ9BTT0 268 aa22.97■■□□□ 1.27
PABPC4-202ENST00000372857 DHX57Q6P158 1386 aaKnown RBP22.95■■□□□ 1.27
PABPC4-202ENST00000372857 RAPGEF2Q9Y4G8 1499 aa22.95■■□□□ 1.26
PABPC4-202ENST00000372857 PEG3Q9GZU2 1588 aa22.94■■□□□ 1.26
PABPC4-202ENST00000372857 KIF21BO75037 1637 aa22.93■■□□□ 1.26
PABPC4-202ENST00000372857 BCANQ96GW7 911 aa22.89■■□□□ 1.25
PABPC4-202ENST00000372857 KCNH8Q96L42 1107 aa22.87■■□□□ 1.25
PABPC4-202ENST00000372857 PRKCSHP14314 528 aaPredicted RBP22.86■■□□□ 1.25
PABPC4-202ENST00000372857 KANK4Q5T7N3 995 aaPredicted RBP22.76■■□□□ 1.23
PABPC4-202ENST00000372857 FKBP8Q14318 412 aa22.71■■□□□ 1.23
PABPC4-202ENST00000372857 ITGAEP38570 1179 aa22.7■■□□□ 1.22
PABPC4-202ENST00000372857 TOP2BQ02880 1626 aa22.62■■□□□ 1.21
PABPC4-202ENST00000372857 CUX1P39880 1505 aa22.61■■□□□ 1.21
PABPC4-202ENST00000372857 NCAPD3P42695 1498 aa22.61■■□□□ 1.21
PABPC4-202ENST00000372857 ARAP1Q96P48 1450 aa22.61■■□□□ 1.21
PABPC4-202ENST00000372857 DDX10Q13206 875 aaKnown RBP22.58■■□□□ 1.21
PABPC4-202ENST00000372857 P3H3Q8IVL6 736 aa22.57■■□□□ 1.2
PABPC4-202ENST00000372857 ATP1B4Q9UN42 357 aaPredicted RBP22.56■■□□□ 1.2
PABPC4-202ENST00000372857 RRBP1Q9P2E9 1410 aaKnown RBP22.56■■□□□ 1.2
PABPC4-202ENST00000372857 RBM19Q9Y4C8 960 aaKnown RBP22.55■■□□□ 1.2
PABPC4-202ENST00000372857 CCNB3Q8WWL7 1395 aa22.52■■□□□ 1.19
PABPC4-202ENST00000372857 KIF27Q86VH2 1401 aa22.51■■□□□ 1.19
PABPC4-202ENST00000372857 NEFLP07196 543 aa22.5■■□□□ 1.19
PABPC4-202ENST00000372857 PRXQ9BXM0 1461 aa22.49■■□□□ 1.19
PABPC4-202ENST00000372857 TRIM52Q96A61 297 aa22.48■■□□□ 1.19
PABPC4-202ENST00000372857 CUX2O14529 1486 aa22.48■■□□□ 1.19
PABPC4-202ENST00000372857 RAB3GAP2Q9H2M9 1393 aa22.47■■□□□ 1.19
PABPC4-202ENST00000372857 CFTRP13569 1480 aa22.47■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms