RNA–Protein interactions for RNA: ENST00000549935.6

CALCOCO1-217, Transcript of calcium binding and coiled-coil domain 1, humanhuman

TSL 5

Gene CALCOCO1, Length 2,112 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CALCOCO1-217ENST00000549935 NISCHQ9Y2I1 1504 aa25.87■■□□□ 1.73
CALCOCO1-217ENST00000549935 SHROOM4Q9ULL8 1493 aa22.18■■□□□ 1.14
CALCOCO1-217ENST00000549935 CCDC180Q9P1Z9 1646 aa21.95■■□□□ 1.1
CALCOCO1-217ENST00000549935 ZCCHC6Q5VYS8 1495 aaKnown RBP21.9■■□□□ 1.1
CALCOCO1-217ENST00000549935 SUPT5HO00267 1087 aaKnown RBP21.77■■□□□ 1.08
CALCOCO1-217ENST00000549935 DCAF8L2P0C7V8 631 aa21.48■■□□□ 1.03
CALCOCO1-217ENST00000549935 HRCP23327 699 aa21.38■■□□□ 1.01
CALCOCO1-217ENST00000549935 CHIC1Q5VXU3 224 aa21.21■□□□□ 0.99
CALCOCO1-217ENST00000549935 MYO15BQ96JP2 1530 aa21.2■□□□□ 0.99
CALCOCO1-217ENST00000549935 DCAF1Q9Y4B6 1507 aa21.19■□□□□ 0.98
CALCOCO1-217ENST00000549935 PCGF6Q9BYE7 350 aa20.92■□□□□ 0.94
CALCOCO1-217ENST00000549935 ABCC9O60706 1549 aa20.69■□□□□ 0.9
CALCOCO1-217ENST00000549935 PPARGC1BQ86YN6 1023 aaKnown RBP20.67■□□□□ 0.9
CALCOCO1-217ENST00000549935 SCRIBQ14160 1630 aa20.63■□□□□ 0.89
CALCOCO1-217ENST00000549935 LOC105371045A0A1W2PR82 267 aa20.57■□□□□ 0.88
CALCOCO1-217ENST00000549935 TRIM26Q12899 539 aaPredicted RBP20.56■□□□□ 0.88
CALCOCO1-217ENST00000549935 RSF1Q96T23 1441 aaPredicted RBP20.51■□□□□ 0.87
CALCOCO1-217ENST00000549935 ZEB1P37275 1124 aaPredicted RBP20.39■□□□□ 0.86
CALCOCO1-217ENST00000549935 RB1CC1Q8TDY2 1594 aa20.34■□□□□ 0.85
CALCOCO1-217ENST00000549935 PELP1Q8IZL8 1130 aaKnown RBP20.28■□□□□ 0.84
CALCOCO1-217ENST00000549935 NACADO15069 1562 aa20.27■□□□□ 0.84
CALCOCO1-217ENST00000549935 TRIM41Q8WV44 630 aa20.26■□□□□ 0.83
CALCOCO1-217ENST00000549935 CECR2Q9BXF3 1484 aa20.19■□□□□ 0.82
CALCOCO1-217ENST00000549935 MROH2BQ7Z745 1585 aa20.13■□□□□ 0.81
CALCOCO1-217ENST00000549935 FAM9AQ8IZU1 332 aaPredicted RBP20.12■□□□□ 0.81
CALCOCO1-217ENST00000549935 WIZO95785 1651 aa20.04■□□□□ 0.8
CALCOCO1-217ENST00000549935 EHMT2Q96KQ7 1210 aa19.98■□□□□ 0.79
CALCOCO1-217ENST00000549935 SCAF1Q9H7N4 1312 aaKnown RBP19.92■□□□□ 0.78
CALCOCO1-217ENST00000549935 BAZ1AQ9NRL2 1556 aaPredicted RBP19.9■□□□□ 0.78
CALCOCO1-217ENST00000549935 EIF4G1Q04637 1599 aaKnown RBP19.78■□□□□ 0.76
CALCOCO1-217ENST00000549935 TOP2AP11388 1531 aaKnown RBP19.7■□□□□ 0.74
CALCOCO1-217ENST00000549935 SMARCA4P51532 1647 aa19.7■□□□□ 0.74
CALCOCO1-217ENST00000549935 UNC13AQ9UPW8 1703 aa19.66■□□□□ 0.74
CALCOCO1-217ENST00000549935 ACIN1Q9UKV3 1341 aaKnown RBP19.64■□□□□ 0.73
CALCOCO1-217ENST00000549935 ABCC8Q09428 1581 aa19.63■□□□□ 0.73
CALCOCO1-217ENST00000549935 CCDC88BA6NC98 1476 aa19.63■□□□□ 0.73
CALCOCO1-217ENST00000549935 SMARCA2P51531 1590 aa19.61■□□□□ 0.73
CALCOCO1-217ENST00000549935 WRNQ14191 1432 aaPredicted RBP eCLIP19.53■□□□□ 0.72
CALCOCO1-217ENST00000549935 CCER1Q8TC90 406 aaPredicted RBP19.51■□□□□ 0.71
CALCOCO1-217ENST00000549935 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.49■□□□□ 0.71
CALCOCO1-217ENST00000549935 NEUROD1Q13562 356 aa19.49■□□□□ 0.71
CALCOCO1-217ENST00000549935 MYT1Q01538 1121 aa19.46■□□□□ 0.71
CALCOCO1-217ENST00000549935 CENPBP07199 599 aaPredicted RBP19.46■□□□□ 0.71
CALCOCO1-217ENST00000549935 SOGA1O94964 1423 aa19.46■□□□□ 0.71
CALCOCO1-217ENST00000549935 PABPN1Q86U42 306 aaKnown RBP eCLIP19.44■□□□□ 0.7
CALCOCO1-217ENST00000549935 DIEXFQ68CQ4 756 aaKnown RBP19.43■□□□□ 0.7
CALCOCO1-217ENST00000549935 CEP162Q5TB80 1403 aa19.41■□□□□ 0.7
CALCOCO1-217ENST00000549935 BICRAQ9NZM4 1560 aa19.39■□□□□ 0.7
CALCOCO1-217ENST00000549935 TTBK1Q5TCY1 1321 aaPredicted RBP19.36■□□□□ 0.69
CALCOCO1-217ENST00000549935 RUSC2Q8N2Y8 1516 aa19.35■□□□□ 0.69
CALCOCO1-217ENST00000549935 TNIKQ9UKE5 1360 aa19.34■□□□□ 0.69
CALCOCO1-217ENST00000549935 GTF3C3Q9Y5Q9 886 aa19.34■□□□□ 0.69
CALCOCO1-217ENST00000549935 EEA1Q15075 1411 aa19.34■□□□□ 0.69
CALCOCO1-217ENST00000549935 CSRNP3Q8WYN3 585 aa19.33■□□□□ 0.69
CALCOCO1-217ENST00000549935 UBTFP17480 764 aaKnown RBP19.3■□□□□ 0.68
CALCOCO1-217ENST00000549935 PEG3Q9GZU2 1588 aa19.29■□□□□ 0.68
CALCOCO1-217ENST00000549935 GOLGA3Q08378 1498 aa19.24■□□□□ 0.67
CALCOCO1-217ENST00000549935 ZNF316A6NFI3 1004 aaPredicted RBP19.21■□□□□ 0.67
CALCOCO1-217ENST00000549935 SYNJ1O43426 1573 aa19.19■□□□□ 0.66
CALCOCO1-217ENST00000549935 ATAD2BQ9ULI0 1458 aa19.16■□□□□ 0.66
CALCOCO1-217ENST00000549935 BAZ1BQ9UIG0 1483 aaKnown RBP19.14■□□□□ 0.65
CALCOCO1-217ENST00000549935 CEP164Q9UPV0 1460 aa19.11■□□□□ 0.65
CALCOCO1-217ENST00000549935 KIF21BO75037 1637 aa19.09■□□□□ 0.65
CALCOCO1-217ENST00000549935 CLIP1P30622 1438 aa19.03■□□□□ 0.64
CALCOCO1-217ENST00000549935 RAPGEF2Q9Y4G8 1499 aa18.98■□□□□ 0.63
CALCOCO1-217ENST00000549935 VPS8Q8N3P4 1428 aa18.95■□□□□ 0.62
CALCOCO1-217ENST00000549935 RANGAP1P46060 587 aaPredicted RBP18.93■□□□□ 0.62
CALCOCO1-217ENST00000549935 MIER1Q8N108 512 aa18.93■□□□□ 0.62
CALCOCO1-217ENST00000549935 TOP2BQ02880 1626 aa18.93■□□□□ 0.62
CALCOCO1-217ENST00000549935 HNRNPUL2Q1KMD3 747 aaKnown RBP18.92■□□□□ 0.62
CALCOCO1-217ENST00000549935 APLP2Q06481 763 aa18.88■□□□□ 0.61
CALCOCO1-217ENST00000549935 CLSPNQ9HAW4 1339 aa18.86■□□□□ 0.61
CALCOCO1-217ENST00000549935 BIVM-ERCC5R4GMW8 1640 aa18.85■□□□□ 0.61
CALCOCO1-217ENST00000549935 YTHDC1Q96MU7 727 aaKnown RBP18.84■□□□□ 0.61
CALCOCO1-217ENST00000549935 HMGXB3Q12766 1538 aa18.77■□□□□ 0.6
CALCOCO1-217ENST00000549935 ERICH3Q5RHP9 1530 aa18.76■□□□□ 0.59
CALCOCO1-217ENST00000549935 PRXQ9BXM0 1461 aa18.76■□□□□ 0.59
CALCOCO1-217ENST00000549935 NCAPD3P42695 1498 aa18.75■□□□□ 0.59
CALCOCO1-217ENST00000549935 CUX1P39880 1505 aa18.73■□□□□ 0.59
CALCOCO1-217ENST00000549935 ARAP1Q96P48 1450 aa18.7■□□□□ 0.58
CALCOCO1-217ENST00000549935 KIF27Q86VH2 1401 aa18.67■□□□□ 0.58
CALCOCO1-217ENST00000549935 DHX57Q6P158 1386 aaKnown RBP18.65■□□□□ 0.58
CALCOCO1-217ENST00000549935 CFTRP13569 1480 aa18.65■□□□□ 0.58
CALCOCO1-217ENST00000549935 KANK4Q5T7N3 995 aaPredicted RBP18.62■□□□□ 0.57
CALCOCO1-217ENST00000549935 CUX2O14529 1486 aa18.57■□□□□ 0.56
CALCOCO1-217ENST00000549935 SUPT16HQ9Y5B9 1047 aaKnown RBP18.57■□□□□ 0.56
CALCOCO1-217ENST00000549935 RRBP1Q9P2E9 1410 aaKnown RBP18.54■□□□□ 0.56
CALCOCO1-217ENST00000549935 ARHGAP35Q9NRY4 1499 aa18.53■□□□□ 0.56
CALCOCO1-217ENST00000549935 PRDM2Q13029 1718 aa18.5■□□□□ 0.55
CALCOCO1-217ENST00000549935 IGF1RP08069 1367 aa18.45■□□□□ 0.54
CALCOCO1-217ENST00000549935 CCNB3Q8WWL7 1395 aa18.44■□□□□ 0.54
CALCOCO1-217ENST00000549935 CADPSQ9ULU8 1353 aa18.42■□□□□ 0.54
CALCOCO1-217ENST00000549935 ITGAEP38570 1179 aa18.41■□□□□ 0.54
CALCOCO1-217ENST00000549935 FGD5Q6ZNL6 1462 aa18.4■□□□□ 0.54
CALCOCO1-217ENST00000549935 TSHZ2Q9NRE2 1034 aa18.4■□□□□ 0.54
CALCOCO1-217ENST00000549935 CARMIL1Q5VZK9 1371 aa18.38■□□□□ 0.53
CALCOCO1-217ENST00000549935 TIAM1Q13009 1591 aa18.35■□□□□ 0.53
CALCOCO1-217ENST00000549935 ANP32EQ9BTT0 268 aa18.32■□□□□ 0.52
CALCOCO1-217ENST00000549935 MAP3K1Q13233 1512 aa18.3■□□□□ 0.52
CALCOCO1-217ENST00000549935 RAB3GAP2Q9H2M9 1393 aa18.29■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms