Protein–RNA interactions for Protein: Q01081

U2AF1, Splicing factor U2AF 35 kDa subunit, humanhuman

Known RBP eCLIP

Length 240 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
U2AF1Q01081 TRAPPC8-211ENST00000582539 4391 ntTSL 1 (best) BASIC13.06□□□□□ -0.324e-6■□□□□ 8.3
U2AF1Q01081 AL133352.1-204ENST00000528174 538 ntAPPRIS ALT2 TSL 312.97□□□□□ -0.334e-6■□□□□ 8.3
U2AF1Q01081 UBE2G2-206ENST00000481546 4340 ntTSL 1 (best)10.93□□□□□ -0.664e-6■□□□□ 8.3
U2AF1Q01081 SSR1-201ENST00000244763 9669 ntAPPRIS P1 TSL 1 (best) BASIC9.24□□□□□ -0.931e-7■□□□□ 8.3
U2AF1Q01081 SPTBN1-204ENST00000467371 3332 ntTSL 29.1□□□□□ -0.951e-7■□□□□ 8.3
U2AF1Q01081 CCDC162P-208ENST00000506861 508 ntTSL 47.49□□□□□ -1.214e-6■□□□□ 8.3
U2AF1Q01081 TRAPPC8-202ENST00000577426 437 ntTSL 56.7□□□□□ -1.344e-6■□□□□ 8.3
U2AF1Q01081 UBR4-217ENST00000497018 183 ntTSL 32.38□□□□□ -2.034e-6■□□□□ 8.3
U2AF1Q01081 ACTB-203ENST00000417101 472 ntTSL 429.18■■■□□ 2.268e-43■□□□□ 8.3
U2AF1Q01081 ACTB-213ENST00000493945 1236 ntTSL 519.85■□□□□ 0.778e-43■□□□□ 8.3
U2AF1Q01081 MIR4639-201ENST00000584938 69 ntBASIC0.56□□□□□ -2.325e-22■□□□□ 8.3
U2AF1Q01081 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC23.73■■□□□ 1.391e-10■□□□□ 8.3
U2AF1Q01081 ACSS3-203ENST00000548058 9254 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.21e-10■□□□□ 8.3
U2AF1Q01081 ACSS3-204ENST00000548324 2214 ntTSL 210.3□□□□□ -0.761e-10■□□□□ 8.3
U2AF1Q01081 DDX39A-206ENST00000587730 1813 ntTSL 1 (best)23.68■■□□□ 1.382e-6■□□□□ 8.3
U2AF1Q01081 PRPF8-205ENST00000572621 7445 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.352e-6■□□□□ 8.3
U2AF1Q01081 PRPF8-207ENST00000573681 1044 ntTSL 217.02■□□□□ 0.322e-6■□□□□ 8.3
U2AF1Q01081 PRPF8-201ENST00000304992 7295 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.332e-6■□□□□ 8.3
U2AF1Q01081 ADAM9-201ENST00000379917 3836 ntTSL 1 (best)12.69□□□□□ -0.382e-6■□□□□ 8.3
U2AF1Q01081 ADAM9-209ENST00000487273 3839 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.412e-6■□□□□ 8.3
U2AF1Q01081 ADAM9-207ENST00000481873 3793 ntTSL 1 (best)12.12□□□□□ -0.472e-6■□□□□ 8.3
U2AF1Q01081 ADAM9-204ENST00000468065 3755 ntTSL 1 (best)11.62□□□□□ -0.552e-6■□□□□ 8.3
U2AF1Q01081 ADAM9-205ENST00000481058 516 ntTSL 53.39□□□□□ -1.872e-6■□□□□ 8.3
U2AF1Q01081 MALAT1-203ENST00000544868 480 ntTSL 3 BASIC10.75□□□□□ -0.691e-323■□□□□ 8.3
U2AF1Q01081 SRSF11-209ENST00000463877 617 ntTSL 238.07■■■■□ 3.682e-19■□□□□ 8.3
U2AF1Q01081 PSME2-211ENST00000559613 300 ntTSL 33.84□□□□□ -1.792e-8■□□□□ 8.2
U2AF1Q01081 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC28.51■■■□□ 2.154e-8■□□□□ 8.2
U2AF1Q01081 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC28.51■■■□□ 2.154e-8■□□□□ 8.2
U2AF1Q01081 SELENOO-202ENST00000492092 1626 ntTSL 1 (best)26.82■■□□□ 1.884e-8■□□□□ 8.2
U2AF1Q01081 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC23.57■■□□□ 1.364e-8■□□□□ 8.2
U2AF1Q01081 AXIN2-202ENST00000375702 2541 ntTSL 1 (best) BASIC20.75■□□□□ 0.914e-8■□□□□ 8.2
U2AF1Q01081 FGFR1OP-201ENST00000349556 1484 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.814e-8■□□□□ 8.2
U2AF1Q01081 AC004805.1-201ENST00000577662 1616 ntAPPRIS P1 TSL 2 BASIC19.86■□□□□ 0.774e-8■□□□□ 8.2
U2AF1Q01081 AXIN2-201ENST00000307078 4259 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.634e-8■□□□□ 8.2
U2AF1Q01081 AXIN2-209ENST00000618960 4060 ntTSL 5 BASIC17.56■□□□□ 0.44e-8■□□□□ 8.2
U2AF1Q01081 FGFR1OP-207ENST00000622353 3451 ntTSL 2 BASIC15.6■□□□□ 0.094e-8■□□□□ 8.2
U2AF1Q01081 FUS-205ENST00000487045 952 ntTSL 215.48■□□□□ 0.074e-8■□□□□ 8.2
U2AF1Q01081 FGFR1OP-202ENST00000366847 14166 ntAPPRIS P4 TSL 1 (best) BASIC9.37□□□□□ -0.914e-8■□□□□ 8.2
U2AF1Q01081 Z94721.2-201ENST00000609590 5310 ntTSL 2 BASIC6.63□□□□□ -1.354e-8■□□□□ 8.2
U2AF1Q01081 FGFR1OP-206ENST00000496181 640 ntTSL 26.43□□□□□ -1.384e-8■□□□□ 8.2
U2AF1Q01081 SF1-210ENST00000443908 767 ntTSL 317.83■□□□□ 0.443e-13■□□□□ 8.2
U2AF1Q01081 PUM1-223ENST00000532678 793 ntTSL 410.7□□□□□ -0.73e-13■□□□□ 8.2
U2AF1Q01081 PUM1-217ENST00000526128 579 ntTSL 37.35□□□□□ -1.233e-13■□□□□ 8.2
U2AF1Q01081 COASY-213ENST00000591753 2225 ntTSL 1 (best)21.96■■□□□ 1.116e-9■□□□□ 8.2
U2AF1Q01081 COASY-209ENST00000588353 387 ntTSL 321.75■■□□□ 1.076e-9■□□□□ 8.2
U2AF1Q01081 COASY-214ENST00000591779 994 ntTSL 220.99■□□□□ 0.956e-9■□□□□ 8.2
U2AF1Q01081 COASY-211ENST00000590958 1976 ntTSL 1 (best) BASIC18.79■□□□□ 0.66e-9■□□□□ 8.2
U2AF1Q01081 COASY-202ENST00000421097 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.536e-9■□□□□ 8.2
U2AF1Q01081 COASY-201ENST00000393818 2458 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.296e-9■□□□□ 8.2
U2AF1Q01081 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC27.18■■□□□ 1.943e-6■□□□□ 8.2
U2AF1Q01081 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.43e-6■□□□□ 8.2
U2AF1Q01081 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC23.46■■□□□ 1.353e-6■□□□□ 8.2
U2AF1Q01081 GPC3-202ENST00000394299 2379 ntTSL 1 (best) BASIC19.81■□□□□ 0.764e-9■□□□□ 8.2
U2AF1Q01081 IP6K2-223ENST00000453202 571 ntTSL 4 BASIC17.05■□□□□ 0.323e-6■□□□□ 8.2
U2AF1Q01081 IP6K2-214ENST00000436134 631 ntTSL 316.85■□□□□ 0.293e-6■□□□□ 8.2
U2AF1Q01081 GPC3-201ENST00000370818 2568 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.274e-9■□□□□ 8.2
U2AF1Q01081 IP6K2-218ENST00000443964 973 ntTSL 4 BASIC15.14■□□□□ 0.013e-6■□□□□ 8.2
U2AF1Q01081 IP6K2-208ENST00000417896 1124 ntTSL 2 BASIC15.06■□□□□ 03e-6■□□□□ 8.2
U2AF1Q01081 MSL1-208ENST00000581246 583 ntTSL 413.64□□□□□ -0.233e-6■□□□□ 8.2
U2AF1Q01081 GPC3-204ENST00000631057 1581 ntTSL 1 (best) BASIC10.39□□□□□ -0.754e-9■□□□□ 8.2
U2AF1Q01081 MSL1-201ENST00000339569 3424 ntTSL 26.09□□□□□ -1.443e-6■□□□□ 8.2
U2AF1Q01081 MSL1-209ENST00000582884 580 ntTSL 56.02□□□□□ -1.453e-6■□□□□ 8.2
U2AF1Q01081 AP1G2-222ENST00000556152 673 ntTSL 314.14□□□□□ -0.151e-7■□□□□ 8.2
U2AF1Q01081 AP1G2-230ENST00000557162 561 ntTSL 413.82□□□□□ -0.21e-7■□□□□ 8.2
U2AF1Q01081 AP1G2-215ENST00000554977 569 ntTSL 412.37□□□□□ -0.431e-7■□□□□ 8.2
U2AF1Q01081 FN1-218ENST00000473614 568 ntTSL 29.41□□□□□ -0.97e-13■□□□□ 8.2
U2AF1Q01081 SRSF2-201ENST00000358156 572 ntTSL 425.08■■□□□ 1.612e-8■□□□□ 8.2
U2AF1Q01081 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC23.59■■□□□ 1.371e-15■□□□□ 8.2
U2AF1Q01081 SRSF2-207ENST00000583836 561 ntTSL 523.4■■□□□ 1.342e-8■□□□□ 8.2
U2AF1Q01081 UGCG-201ENST00000374279 4007 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.012e-8■□□□□ 8.2
U2AF1Q01081 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC21.32■■□□□ 11e-15■□□□□ 8.2
U2AF1Q01081 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC27.41■■□□□ 1.982e-7■□□□□ 8.2
U2AF1Q01081 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC25.21■■□□□ 1.632e-7■□□□□ 8.2
U2AF1Q01081 FOXN3-204ENST00000553840 555 ntTSL 423.68■■□□□ 1.382e-7■□□□□ 8.2
U2AF1Q01081 FOXN3-219ENST00000615335 2421 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.282e-7■□□□□ 8.2
U2AF1Q01081 FOXN3-212ENST00000556541 388 ntTSL 314.99□□□□□ -0.012e-7■□□□□ 8.2
U2AF1Q01081 FOXN3-201ENST00000261302 2542 ntAPPRIS ALT1 TSL 5 BASIC14.91□□□□□ -0.022e-7■□□□□ 8.2
U2AF1Q01081 FOXN3-202ENST00000345097 7832 ntAPPRIS ALT1 TSL 1 (best) BASIC11.59□□□□□ -0.552e-7■□□□□ 8.2
U2AF1Q01081 FOXN3-218ENST00000557718 398 ntTSL 57.89□□□□□ -1.152e-7■□□□□ 8.2
U2AF1Q01081 FOXN3-217ENST00000557572 513 ntTSL 33.9□□□□□ -1.792e-7■□□□□ 8.2
U2AF1Q01081 FOXN3-207ENST00000555010 340 ntTSL 53.66□□□□□ -1.822e-7■□□□□ 8.2
U2AF1Q01081 FOXN3-216ENST00000557496 228 ntTSL 53.02□□□□□ -1.932e-7■□□□□ 8.2
U2AF1Q01081 TMEM248-205ENST00000433271 1610 ntTSL 1 (best)35.26■■■■□ 3.246e-7■□□□□ 8.1
U2AF1Q01081 KRIT1-215ENST00000452773 665 ntTSL 224.34■■□□□ 1.496e-7■□□□□ 8.1
U2AF1Q01081 KRIT1-224ENST00000489087 512 ntTSL 424.14■■□□□ 1.456e-7■□□□□ 8.1
U2AF1Q01081 KRIT1-210ENST00000430102 702 ntTSL 323.37■■□□□ 1.336e-7■□□□□ 8.1
U2AF1Q01081 HGS-212ENST00000575058 632 ntTSL 321.98■■□□□ 1.116e-7■□□□□ 8.1
U2AF1Q01081 HGS-208ENST00000572392 824 ntTSL 521.11■□□□□ 0.976e-7■□□□□ 8.1
U2AF1Q01081 KRIT1-217ENST00000458177 1472 ntTSL 1 (best)19.1■□□□□ 0.656e-7■□□□□ 8.1
U2AF1Q01081 GLYR1-207ENST00000587936 897 ntTSL 518.39■□□□□ 0.536e-7■□□□□ 8.1
U2AF1Q01081 RPS6KC1-207ENST00000543470 4227 ntTSL 2 BASIC18.34■□□□□ 0.536e-7■□□□□ 8.1
U2AF1Q01081 RPS6KC1-201ENST00000366959 5454 ntAPPRIS ALT1 TSL 2 BASIC18.22■□□□□ 0.516e-7■□□□□ 8.1
U2AF1Q01081 RPS6KC1-202ENST00000366960 5490 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.516e-7■□□□□ 8.1
U2AF1Q01081 RPS6KC1-208ENST00000614059 4188 ntTSL 1 (best) BASIC17.77■□□□□ 0.446e-7■□□□□ 8.1
U2AF1Q01081 RPS6KC1-206ENST00000543354 4082 ntTSL 1 (best) BASIC17.62■□□□□ 0.416e-7■□□□□ 8.1
U2AF1Q01081 TMEM248-201ENST00000341567 4229 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.46e-7■□□□□ 8.1
U2AF1Q01081 GLYR1-212ENST00000591451 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC17.3■□□□□ 0.366e-7■□□□□ 8.1
U2AF1Q01081 KRIT1-211ENST00000433016 855 ntTSL 516.44■□□□□ 0.226e-7■□□□□ 8.1
U2AF1Q01081 KRIT1-219ENST00000466166 545 ntTSL 416.44■□□□□ 0.226e-7■□□□□ 8.1
U2AF1Q01081 RPS6KC1-209ENST00000615329 4022 ntTSL 1 (best) BASIC16.09■□□□□ 0.176e-7■□□□□ 8.1
Retrieved 100 of 10,096 protein–RNA pairs in 285.7 ms