RNA–Protein interactions for RNA: ENST00000497018.1

UBR4-217, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 3

Gene UBR4, Length 183 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-217ENST00000497018 CHIC1Q5VXU3 224 aa5.62□□□□□ -1.51
UBR4-217ENST00000497018 AEBP2Q6ZN18 517 aaPredicted RBP5.42□□□□□ -1.54
UBR4-217ENST00000497018 PHF23Q9BUL5 403 aaPredicted RBP5.01□□□□□ -1.61
UBR4-217ENST00000497018 PLPPR3Q6T4P5 718 aa4.71□□□□□ -1.66
UBR4-217ENST00000497018 SENP3Q9H4L4 574 aaPredicted RBP4.7□□□□□ -1.66
UBR4-217ENST00000497018 EHMT2Q96KQ7 1210 aa4.65□□□□□ -1.67
UBR4-217ENST00000497018 SLC24A1O60721 1099 aa4.56□□□□□ -1.68
UBR4-217ENST00000497018 KCNA4P22459 653 aa4.55□□□□□ -1.68
UBR4-217ENST00000497018 CSRNP3Q8WYN3 585 aa4.49□□□□□ -1.69
UBR4-217ENST00000497018 ADRA2BP18089 450 aa4.41□□□□□ -1.7
UBR4-217ENST00000497018 SLC4A1APQ9BWU0 796 aaKnown RBP4.36□□□□□ -1.71
UBR4-217ENST00000497018 RTN4Q9NQC3 1192 aaKnown RBP4.35□□□□□ -1.71
UBR4-217ENST00000497018 AMER1Q5JTC6 1135 aaPredicted RBP4.3□□□□□ -1.72
UBR4-217ENST00000497018 PPP6R1Q9UPN7 881 aa4.28□□□□□ -1.72
UBR4-217ENST00000497018 FOXD1Q16676 465 aa4.25□□□□□ -1.73
UBR4-217ENST00000497018 ZBTB22O15209 634 aa4.24□□□□□ -1.73
UBR4-217ENST00000497018 NCBP3Q53F19 620 aaKnown RBP4.2□□□□□ -1.74
UBR4-217ENST00000497018 PPP4R3CPQ6ZMV5 832 aa4.18□□□□□ -1.74
UBR4-217ENST00000497018 NPM3O75607 178 aaKnown RBP4.15□□□□□ -1.75
UBR4-217ENST00000497018 PIAS4Q8N2W9 510 aaPredicted RBP4.12□□□□□ -1.75
UBR4-217ENST00000497018 SCAF1Q9H7N4 1312 aaKnown RBP4.06□□□□□ -1.76
UBR4-217ENST00000497018 FOXD4L1Q9NU39 408 aa4.06□□□□□ -1.76
UBR4-217ENST00000497018 DNAJC5BQ9UF47 199 aa4.05□□□□□ -1.76
UBR4-217ENST00000497018 CNKSR2Q8WXI2 1034 aa4.01□□□□□ -1.77
UBR4-217ENST00000497018 FKBP8Q14318 412 aa3.98□□□□□ -1.77
UBR4-217ENST00000497018 PRKCSHP14314 528 aaPredicted RBP3.97□□□□□ -1.77
UBR4-217ENST00000497018 PLCB2Q00722 1185 aa3.96□□□□□ -1.78
UBR4-217ENST00000497018 MSH5O43196 834 aa3.93□□□□□ -1.78
UBR4-217ENST00000497018 TAOK2Q9UL54 1235 aa3.93□□□□□ -1.78
UBR4-217ENST00000497018 BCANQ96GW7 911 aa3.91□□□□□ -1.78
UBR4-217ENST00000497018 DAXXQ9UER7 740 aaPredicted RBP3.89□□□□□ -1.79
UBR4-217ENST00000497018 ATXN8OSP0DMR3 200 aa3.88□□□□□ -1.79
UBR4-217ENST00000497018 RNF216Q9NWF9 866 aaPredicted RBP3.87□□□□□ -1.79
UBR4-217ENST00000497018 SLC4A2P04920 1241 aa3.86□□□□□ -1.79
UBR4-217ENST00000497018 HAP1P54257 671 aaPredicted RBP3.84□□□□□ -1.79
UBR4-217ENST00000497018 TPRNQ4KMQ1 711 aa3.84□□□□□ -1.79
UBR4-217ENST00000497018 VSIG10Q8N0Z9 540 aa3.84□□□□□ -1.79
UBR4-217ENST00000497018 TIMELESSQ9UNS1 1208 aa3.84□□□□□ -1.79
UBR4-217ENST00000497018 MYCNP04198 464 aaPredicted RBP3.8□□□□□ -1.8
UBR4-217ENST00000497018 ARXQ96QS3 562 aa3.8□□□□□ -1.8
UBR4-217ENST00000497018 DNAJC5Q9H3Z4 198 aa3.8□□□□□ -1.8
UBR4-217ENST00000497018 KDM2AQ9Y2K7 1162 aa3.79□□□□□ -1.8
UBR4-217ENST00000497018 MAPK8IP2Q13387 824 aaPredicted RBP3.78□□□□□ -1.8
UBR4-217ENST00000497018 TULP1O00294 542 aaPredicted RBP3.76□□□□□ -1.81
UBR4-217ENST00000497018 HOXD11P31277 338 aaPredicted RBP3.76□□□□□ -1.81
UBR4-217ENST00000497018 FBLN2P98095 1184 aa3.75□□□□□ -1.81
UBR4-217ENST00000497018 DMRT2Q9Y5R5 561 aa3.75□□□□□ -1.81
UBR4-217ENST00000497018 PKD2Q13563 968 aa3.73□□□□□ -1.81
UBR4-217ENST00000497018 PROM2Q8N271 834 aa3.72□□□□□ -1.81
UBR4-217ENST00000497018 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP3.71□□□□□ -1.82
UBR4-217ENST00000497018 HNRNPUL2Q1KMD3 747 aaKnown RBP3.71□□□□□ -1.82
UBR4-217ENST00000497018 ATF5Q9Y2D1 282 aaPredicted RBP3.71□□□□□ -1.82
UBR4-217ENST00000497018 VASPP50552 380 aaPredicted RBP3.7□□□□□ -1.82
UBR4-217ENST00000497018 FBXO3Q9UK99 471 aa3.7□□□□□ -1.82
UBR4-217ENST00000497018 GTF3C3Q9Y5Q9 886 aa3.7□□□□□ -1.82
UBR4-217ENST00000497018 IFNLR1Q8IU57 520 aaPredicted RBP3.69□□□□□ -1.82
UBR4-217ENST00000497018 NPM1P06748 294 aaKnown RBP eCLIP3.68□□□□□ -1.82
UBR4-217ENST00000497018 HOMEZQ8IX15 550 aa3.68□□□□□ -1.82
UBR4-217ENST00000497018 BBXQ8WY36 941 aaPredicted RBP3.68□□□□□ -1.82
UBR4-217ENST00000497018 DCAF8L2P0C7V8 631 aa3.67□□□□□ -1.82
UBR4-217ENST00000497018 SAMD1Q6SPF0 538 aaPredicted RBP3.67□□□□□ -1.82
UBR4-217ENST00000497018 ERICH6Q7L0X2 663 aa3.67□□□□□ -1.82
UBR4-217ENST00000497018 TMEM132AQ24JP5 1023 aa3.66□□□□□ -1.82
UBR4-217ENST00000497018 PAXIP1Q6ZW49 1069 aaPredicted RBP3.65□□□□□ -1.83
UBR4-217ENST00000497018 TSHZ2Q9NRE2 1034 aa3.65□□□□□ -1.83
UBR4-217ENST00000497018 APLP2Q06481 763 aa3.64□□□□□ -1.83
UBR4-217ENST00000497018 GRWD1Q9BQ67 446 aaKnown RBP eCLIP3.64□□□□□ -1.83
UBR4-217ENST00000497018 ZBTB4Q9P1Z0 1013 aaPredicted RBP3.64□□□□□ -1.83
UBR4-217ENST00000497018 DCAF8L1A6NGE4 600 aa3.62□□□□□ -1.83
UBR4-217ENST00000497018 SPDYE4A6NLX3 237 aa3.61□□□□□ -1.83
UBR4-217ENST00000497018 CFAP44Q96MT7 982 aa3.61□□□□□ -1.83
UBR4-217ENST00000497018 MKRN4PQ13434 485 aaPredicted RBP3.59□□□□□ -1.83
UBR4-217ENST00000497018 NBR1Q14596 966 aa3.59□□□□□ -1.83
UBR4-217ENST00000497018 C14orf37Q86TY3 774 aa3.58□□□□□ -1.84
UBR4-217ENST00000497018 SPRYD3Q8NCJ5 442 aa3.58□□□□□ -1.84
UBR4-217ENST00000497018 RGL2O15211 777 aa3.57□□□□□ -1.84
UBR4-217ENST00000497018 ECM2O94769 699 aaPredicted RBP3.56□□□□□ -1.84
UBR4-217ENST00000497018 SPOCK2Q92563 424 aa3.54□□□□□ -1.84
UBR4-217ENST00000497018 PODXL2Q9NZ53 605 aa3.54□□□□□ -1.84
UBR4-217ENST00000497018 ZNF219Q9P2Y4 722 aaPredicted RBP3.54□□□□□ -1.84
UBR4-217ENST00000497018 U3KPZ7 1027 aaPredicted RBP3.54□□□□□ -1.84
UBR4-217ENST00000497018 RANGAP1P46060 587 aaPredicted RBP3.5□□□□□ -1.85
UBR4-217ENST00000497018 HS6ST3Q8IZP7 471 aa3.5□□□□□ -1.85
UBR4-217ENST00000497018 ABCC9O60706 1549 aa3.49□□□□□ -1.85
UBR4-217ENST00000497018 CHGAP10645 457 aaKnown RBP3.49□□□□□ -1.85
UBR4-217ENST00000497018 SUPT5HO00267 1087 aaKnown RBP3.48□□□□□ -1.85
UBR4-217ENST00000497018 BRPF1P55201 1214 aaPredicted RBP3.48□□□□□ -1.85
UBR4-217ENST00000497018 TRIM41Q8WV44 630 aa3.48□□□□□ -1.85
UBR4-217ENST00000497018 UBTFP17480 764 aaKnown RBP3.47□□□□□ -1.85
UBR4-217ENST00000497018 NKX1-1Q15270 411 aaPredicted RBP3.47□□□□□ -1.85
UBR4-217ENST00000497018 KLHL34Q8N239 644 aa3.47□□□□□ -1.85
UBR4-217ENST00000497018 ZBTB12Q9Y330 459 aaPredicted RBP3.47□□□□□ -1.85
UBR4-217ENST00000497018 TRIM26Q12899 539 aaPredicted RBP3.46□□□□□ -1.86
UBR4-217ENST00000497018 GTPBP6O43824 516 aaPredicted RBP3.45□□□□□ -1.86
UBR4-217ENST00000497018 RNF25Q96BH1 459 aaPredicted RBP3.45□□□□□ -1.86
UBR4-217ENST00000497018 HRCP23327 699 aa3.44□□□□□ -1.86
UBR4-217ENST00000497018 TRHP20396 242 aaPredicted RBP3.43□□□□□ -1.86
UBR4-217ENST00000497018 LMOD2Q6P5Q4 547 aa3.43□□□□□ -1.86
UBR4-217ENST00000497018 POLA2Q14181 598 aa3.42□□□□□ -1.86
UBR4-217ENST00000497018 DHX30Q7L2E3 1194 aaKnown RBP eCLIP3.42□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 161.3 ms