RNA–Protein interactions for RNA: ENST00000556541.1

FOXN3-212, Transcript of forkhead box N3, humanhuman

TSL 3

Gene FOXN3, Length 388 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN3-212ENST00000556541 NISCHQ9Y2I1 1504 aa26.81■■□□□ 1.88
FOXN3-212ENST00000556541 CCDC180Q9P1Z9 1646 aa23.78■■□□□ 1.4
FOXN3-212ENST00000556541 ABCC9O60706 1549 aa22.59■■□□□ 1.21
FOXN3-212ENST00000556541 ZCCHC6Q5VYS8 1495 aaKnown RBP22.45■■□□□ 1.18
FOXN3-212ENST00000556541 DCAF1Q9Y4B6 1507 aa22.34■■□□□ 1.17
FOXN3-212ENST00000556541 MYO15BQ96JP2 1530 aa22.31■■□□□ 1.16
FOXN3-212ENST00000556541 NACADO15069 1562 aa22.21■■□□□ 1.15
FOXN3-212ENST00000556541 RB1CC1Q8TDY2 1594 aa22.09■■□□□ 1.13
FOXN3-212ENST00000556541 DCAF8L2P0C7V8 631 aa21.9■■□□□ 1.1
FOXN3-212ENST00000556541 UNC13AQ9UPW8 1703 aa21.6■■□□□ 1.05
FOXN3-212ENST00000556541 SCRIBQ14160 1630 aa21.51■■□□□ 1.03
FOXN3-212ENST00000556541 BICRAQ9NZM4 1560 aa21.39■■□□□ 1.01
FOXN3-212ENST00000556541 SHROOM4Q9ULL8 1493 aa21.38■■□□□ 1.01
FOXN3-212ENST00000556541 DNAJC5BQ9UF47 199 aa21.22■□□□□ 0.99
FOXN3-212ENST00000556541 PABPN1Q86U42 306 aaKnown RBP eCLIP21.08■□□□□ 0.97
FOXN3-212ENST00000556541 BAZ1AQ9NRL2 1556 aaPredicted RBP20.78■□□□□ 0.92
FOXN3-212ENST00000556541 EIF4G1Q04637 1599 aaKnown RBP20.77■□□□□ 0.92
FOXN3-212ENST00000556541 CECR2Q9BXF3 1484 aa20.74■□□□□ 0.91
FOXN3-212ENST00000556541 SMARCA4P51532 1647 aa20.72■□□□□ 0.91
FOXN3-212ENST00000556541 PEG3Q9GZU2 1588 aa20.62■□□□□ 0.89
FOXN3-212ENST00000556541 MROH2BQ7Z745 1585 aa20.6■□□□□ 0.89
FOXN3-212ENST00000556541 CC2D2AQ9P2K1 1620 aa20.56■□□□□ 0.88
FOXN3-212ENST00000556541 SMARCA2P51531 1590 aa20.54■□□□□ 0.88
FOXN3-212ENST00000556541 RSF1Q96T23 1441 aaPredicted RBP20.53■□□□□ 0.88
FOXN3-212ENST00000556541 ATAD2BQ9ULI0 1458 aa20.47■□□□□ 0.87
FOXN3-212ENST00000556541 NCAPD3P42695 1498 aa20.45■□□□□ 0.86
FOXN3-212ENST00000556541 HMGXB3Q12766 1538 aa20.43■□□□□ 0.86
FOXN3-212ENST00000556541 WIZO95785 1651 aa20.4■□□□□ 0.86
FOXN3-212ENST00000556541 BAZ1BQ9UIG0 1483 aaKnown RBP20.3■□□□□ 0.84
FOXN3-212ENST00000556541 TOP2AP11388 1531 aaKnown RBP20.29■□□□□ 0.84
FOXN3-212ENST00000556541 SUPT5HO00267 1087 aaKnown RBP20.1■□□□□ 0.81
FOXN3-212ENST00000556541 CCDC88BA6NC98 1476 aa19.97■□□□□ 0.79
FOXN3-212ENST00000556541 LAMC3Q9Y6N6 1575 aa19.87■□□□□ 0.77
FOXN3-212ENST00000556541 DNAJC5Q9H3Z4 198 aa19.86■□□□□ 0.77
FOXN3-212ENST00000556541 PRDM2Q13029 1718 aa19.83■□□□□ 0.77
FOXN3-212ENST00000556541 CFTRP13569 1480 aa19.83■□□□□ 0.76
FOXN3-212ENST00000556541 CADPSQ9ULU8 1353 aa19.82■□□□□ 0.76
FOXN3-212ENST00000556541 NESP48681 1621 aa19.67■□□□□ 0.74
FOXN3-212ENST00000556541 PDS5BQ9NTI5 1447 aa19.66■□□□□ 0.74
FOXN3-212ENST00000556541 FANCD2Q9BXW9 1451 aa19.57■□□□□ 0.72
FOXN3-212ENST00000556541 KIF21AQ7Z4S6 1674 aa19.56■□□□□ 0.72
FOXN3-212ENST00000556541 CEP164Q9UPV0 1460 aa19.53■□□□□ 0.72
FOXN3-212ENST00000556541 ERCC6Q03468 1493 aa19.47■□□□□ 0.71
FOXN3-212ENST00000556541 ABCC8Q09428 1581 aa19.44■□□□□ 0.7
FOXN3-212ENST00000556541 THOC2Q8NI27 1593 aaKnown RBP19.44■□□□□ 0.7
FOXN3-212ENST00000556541 MRC2Q9UBG0 1479 aa19.42■□□□□ 0.7
FOXN3-212ENST00000556541 WDR62O43379 1518 aa19.4■□□□□ 0.7
FOXN3-212ENST00000556541 DNMBPQ6XZF7 1577 aa19.39■□□□□ 0.69
FOXN3-212ENST00000556541 BIVM-ERCC5R4GMW8 1640 aa19.36■□□□□ 0.69
FOXN3-212ENST00000556541 URB2Q14146 1524 aaKnown RBP19.35■□□□□ 0.69
FOXN3-212ENST00000556541 WRNQ14191 1432 aaPredicted RBP eCLIP19.34■□□□□ 0.69
FOXN3-212ENST00000556541 TOP2BQ02880 1626 aa19.33■□□□□ 0.69
FOXN3-212ENST00000556541 TOPBP1Q92547 1522 aa19.33■□□□□ 0.68
FOXN3-212ENST00000556541 CUX1P39880 1505 aa19.32■□□□□ 0.68
FOXN3-212ENST00000556541 SYNJ1O43426 1573 aa19.27■□□□□ 0.68
FOXN3-212ENST00000556541 CUX2O14529 1486 aa19.25■□□□□ 0.67
FOXN3-212ENST00000556541 POLA1P09884 1462 aaPredicted RBP19.18■□□□□ 0.66
FOXN3-212ENST00000556541 FGD5Q6ZNL6 1462 aa19.17■□□□□ 0.66
FOXN3-212ENST00000556541 WDR97A6NE52 1622 aa19.14■□□□□ 0.65
FOXN3-212ENST00000556541 IFT140Q96RY7 1462 aa19.13■□□□□ 0.65
FOXN3-212ENST00000556541 TARBP1Q13395 1621 aaKnown RBP19.13■□□□□ 0.65
FOXN3-212ENST00000556541 CHIC1Q5VXU3 224 aa19.12■□□□□ 0.65
FOXN3-212ENST00000556541 ABCA10Q8WWZ4 1543 aa19.09■□□□□ 0.65
FOXN3-212ENST00000556541 SOGA1O94964 1423 aa19.08■□□□□ 0.64
FOXN3-212ENST00000556541 TRIM41Q8WV44 630 aa19.06■□□□□ 0.64
FOXN3-212ENST00000556541 RAD54L2Q9Y4B4 1467 aa19.01■□□□□ 0.63
FOXN3-212ENST00000556541 ABCA5Q8WWZ7 1642 aa18.99■□□□□ 0.63
FOXN3-212ENST00000556541 EIF4G3O43432 1585 aaKnown RBP18.93■□□□□ 0.62
FOXN3-212ENST00000556541 EEA1Q15075 1411 aa18.92■□□□□ 0.62
FOXN3-212ENST00000556541 KIF27Q86VH2 1401 aa18.92■□□□□ 0.62
FOXN3-212ENST00000556541 ZNF608Q9ULD9 1512 aaPredicted RBP18.9■□□□□ 0.62
FOXN3-212ENST00000556541 GAPVD1Q14C86 1478 aa18.89■□□□□ 0.61
FOXN3-212ENST00000556541 ERICH3Q5RHP9 1530 aa18.89■□□□□ 0.61
FOXN3-212ENST00000556541 PBRM1Q86U86 1689 aa18.89■□□□□ 0.61
FOXN3-212ENST00000556541 GRIN2BQ13224 1484 aa18.86■□□□□ 0.61
FOXN3-212ENST00000556541 TDRD9Q8NDG6 1382 aaKnown RBP18.84■□□□□ 0.61
FOXN3-212ENST00000556541 AQRO60306 1485 aaKnown RBP eCLIP18.84■□□□□ 0.616e-7■■■□□ 15.2
FOXN3-212ENST00000556541 CUL7Q14999 1698 aa18.82■□□□□ 0.6
FOXN3-212ENST00000556541 MAGI1Q96QZ7 1491 aaPredicted RBP18.81■□□□□ 0.6
FOXN3-212ENST00000556541 RUSC2Q8N2Y8 1516 aa18.77■□□□□ 0.6
FOXN3-212ENST00000556541 IGF1RP08069 1367 aa18.77■□□□□ 0.6
FOXN3-212ENST00000556541 ADAMTS12P58397 1594 aa18.75■□□□□ 0.59
FOXN3-212ENST00000556541 FHAD1B1AJZ9 1412 aa18.72■□□□□ 0.59
FOXN3-212ENST00000556541 SNAPC4Q5SXM2 1469 aa18.71■□□□□ 0.59
FOXN3-212ENST00000556541 SYNJ2O15056 1496 aa18.7■□□□□ 0.58
FOXN3-212ENST00000556541 PRXQ9BXM0 1461 aa18.7■□□□□ 0.58
FOXN3-212ENST00000556541 KIF21BO75037 1637 aa18.68■□□□□ 0.58
FOXN3-212ENST00000556541 CSRNP3Q8WYN3 585 aa18.68■□□□□ 0.58
FOXN3-212ENST00000556541 CARMIL1Q5VZK9 1371 aa18.66■□□□□ 0.58
FOXN3-212ENST00000556541 RAPGEF2Q9Y4G8 1499 aa18.63■□□□□ 0.57
FOXN3-212ENST00000556541 CHD1O14646 1710 aa18.62■□□□□ 0.57
FOXN3-212ENST00000556541 GRIN2AQ12879 1464 aa18.6■□□□□ 0.57
FOXN3-212ENST00000556541 NUP160Q12769 1436 aa18.55■□□□□ 0.56
FOXN3-212ENST00000556541 GOLGA3Q08378 1498 aa18.54■□□□□ 0.56
FOXN3-212ENST00000556541 CHMP7Q8WUX9 453 aaPredicted RBP18.52■□□□□ 0.56
FOXN3-212ENST00000556541 FAM9AQ8IZU1 332 aaPredicted RBP18.51■□□□□ 0.55
FOXN3-212ENST00000556541 CTTNBP2Q8WZ74 1663 aa18.5■□□□□ 0.55
FOXN3-212ENST00000556541 CEP170Q5SW79 1584 aa18.49■□□□□ 0.55
FOXN3-212ENST00000556541 CLASP1Q7Z460 1538 aa18.46■□□□□ 0.55
FOXN3-212ENST00000556541 KIAA0586Q9BVV6 1533 aa18.46■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 69.3 ms