RNA–Protein interactions for RNA: ENST00000244763.8

SSR1-201, Transcript of signal sequence receptor subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SSR1, Length 9,669 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSR1-201ENST00000244763 DCAF8L2P0C7V8 631 aa12.65□□□□□ -0.39
SSR1-201ENST00000244763 NISCHQ9Y2I1 1504 aa11.92□□□□□ -0.5
SSR1-201ENST00000244763 SUPT5HO00267 1087 aaKnown RBP11.79□□□□□ -0.52
SSR1-201ENST00000244763 FAM9AQ8IZU1 332 aaPredicted RBP11.77□□□□□ -0.52
SSR1-201ENST00000244763 PELP1Q8IZL8 1130 aaKnown RBP11.64□□□□□ -0.55
SSR1-201ENST00000244763 APLP2Q06481 763 aa11.62□□□□□ -0.55
SSR1-201ENST00000244763 SHROOM4Q9ULL8 1493 aa11.49□□□□□ -0.57
SSR1-201ENST00000244763 EHMT2Q96KQ7 1210 aa11.32□□□□□ -0.6
SSR1-201ENST00000244763 CCER1Q8TC90 406 aaPredicted RBP11.14□□□□□ -0.63
SSR1-201ENST00000244763 ATP1B4Q9UN42 357 aaPredicted RBP11.1□□□□□ -0.63
SSR1-201ENST00000244763 ZEB1P37275 1124 aaPredicted RBP11.1□□□□□ -0.63
SSR1-201ENST00000244763 TRIM41Q8WV44 630 aa11.07□□□□□ -0.64
SSR1-201ENST00000244763 CENPBP07199 599 aaPredicted RBP11.01□□□□□ -0.65
SSR1-201ENST00000244763 ERICH6Q7L0X2 663 aa11.01□□□□□ -0.65
SSR1-201ENST00000244763 UBTFP17480 764 aaKnown RBP11□□□□□ -0.65
SSR1-201ENST00000244763 PCGF6Q9BYE7 350 aa10.97□□□□□ -0.65
SSR1-201ENST00000244763 RANGAP1P46060 587 aaPredicted RBP10.96□□□□□ -0.65
SSR1-201ENST00000244763 TTBK1Q5TCY1 1321 aaPredicted RBP10.94□□□□□ -0.66
SSR1-201ENST00000244763 NEFLP07196 543 aa10.88□□□□□ -0.67
SSR1-201ENST00000244763 MYT1LQ9UL68 1186 aa10.84□□□□□ -0.67
SSR1-201ENST00000244763 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.76□□□□□ -0.69
SSR1-201ENST00000244763 HNRNPUL2Q1KMD3 747 aaKnown RBP10.76□□□□□ -0.69
SSR1-201ENST00000244763 DAXXQ9UER7 740 aaPredicted RBP10.65□□□□□ -0.71
SSR1-201ENST00000244763 TRIM26Q12899 539 aaPredicted RBP10.62□□□□□ -0.71
SSR1-201ENST00000244763 MYT1Q01538 1121 aa10.6□□□□□ -0.71
SSR1-201ENST00000244763 POLR3GLQ9BT43 218 aa10.55□□□□□ -0.72
SSR1-201ENST00000244763 ITGAEP38570 1179 aa10.54□□□□□ -0.72
SSR1-201ENST00000244763 YTHDC1Q96MU7 727 aaKnown RBP10.52□□□□□ -0.73
SSR1-201ENST00000244763 SLC4A1APQ9BWU0 796 aaKnown RBP10.51□□□□□ -0.73
SSR1-201ENST00000244763 PPARGC1BQ86YN6 1023 aaKnown RBP10.44□□□□□ -0.74
SSR1-201ENST00000244763 CHIC1Q5VXU3 224 aa10.44□□□□□ -0.74
SSR1-201ENST00000244763 FAM50AQ14320 339 aaKnown RBP10.37□□□□□ -0.75
SSR1-201ENST00000244763 CLSPNQ9HAW4 1339 aa10.37□□□□□ -0.75
SSR1-201ENST00000244763 TRIM52Q96A61 297 aa10.36□□□□□ -0.75
SSR1-201ENST00000244763 ABCC9O60706 1549 aa10.36□□□□□ -0.75
SSR1-201ENST00000244763 ZBTB47Q9UFB7 747 aaPredicted RBP10.35□□□□□ -0.75
SSR1-201ENST00000244763 ZNF316A6NFI3 1004 aaPredicted RBP10.33□□□□□ -0.76
SSR1-201ENST00000244763 NEFMP07197 916 aa10.32□□□□□ -0.76
SSR1-201ENST00000244763 HRCP23327 699 aa10.31□□□□□ -0.76
SSR1-201ENST00000244763 PABPN1Q86U42 306 aaKnown RBP eCLIP10.3□□□□□ -0.76
SSR1-201ENST00000244763 FBLN2P98095 1184 aa10.29□□□□□ -0.76
SSR1-201ENST00000244763 CNGB1Q14028 1251 aaPredicted RBP10.29□□□□□ -0.76
SSR1-201ENST00000244763 LOC105371045A0A1W2PR82 267 aa10.27□□□□□ -0.77
SSR1-201ENST00000244763 CDK11AQ9UQ88 783 aaPredicted RBP10.27□□□□□ -0.77
SSR1-201ENST00000244763 RTL5Q5HYW3 569 aaPredicted RBP10.25□□□□□ -0.77
SSR1-201ENST00000244763 BCANQ96GW7 911 aa10.24□□□□□ -0.77
SSR1-201ENST00000244763 ESF1Q9H501 851 aaKnown RBP10.24□□□□□ -0.77
SSR1-201ENST00000244763 ANP32CO43423 234 aa10.21□□□□□ -0.77
SSR1-201ENST00000244763 NPM1P06748 294 aaKnown RBP eCLIP10.19□□□□□ -0.78
SSR1-201ENST00000244763 DIEXFQ68CQ4 756 aaKnown RBP10.19□□□□□ -0.78
SSR1-201ENST00000244763 NEUROD1Q13562 356 aa10.18□□□□□ -0.78
SSR1-201ENST00000244763 SLC24A1O60721 1099 aa10.18□□□□□ -0.78
SSR1-201ENST00000244763 CANXP27824 592 aaKnown RBP10.13□□□□□ -0.79
SSR1-201ENST00000244763 ZNF326Q5BKZ1 582 aaKnown RBP10.13□□□□□ -0.79
SSR1-201ENST00000244763 STAG3Q9UJ98 1225 aa10.11□□□□□ -0.79
SSR1-201ENST00000244763 CSRNP3Q8WYN3 585 aa10.07□□□□□ -0.8
SSR1-201ENST00000244763 ZNF777Q9ULD5 760 aaPredicted RBP10.05□□□□□ -0.8
SSR1-201ENST00000244763 ACIN1Q9UKV3 1341 aaKnown RBP10.01□□□□□ -0.81
SSR1-201ENST00000244763 P3H3Q8IVL6 736 aa10.01□□□□□ -0.81
SSR1-201ENST00000244763 CHGAP10645 457 aaKnown RBP9.99□□□□□ -0.81
SSR1-201ENST00000244763 TSPY4P0CV99 314 aa9.97□□□□□ -0.81
SSR1-201ENST00000244763 TSPY10P0CW01 314 aa9.97□□□□□ -0.81
SSR1-201ENST00000244763 SCRIBQ14160 1630 aa9.96□□□□□ -0.82
SSR1-201ENST00000244763 TONSLQ96HA7 1378 aa9.95□□□□□ -0.82
SSR1-201ENST00000244763 UPF2Q9HAU5 1272 aaKnown RBP9.95□□□□□ -0.82
SSR1-201ENST00000244763 ANP32BQ92688 251 aaKnown RBP9.95□□□□□ -0.82
SSR1-201ENST00000244763 ANP32AP39687 249 aaKnown RBP9.94□□□□□ -0.82
SSR1-201ENST00000244763 GOLGA6L2Q8N9W4 650 aaPredicted RBP9.93□□□□□ -0.82
SSR1-201ENST00000244763 ARID3CA6NKF2 412 aa9.93□□□□□ -0.82
SSR1-201ENST00000244763 CCDC180Q9P1Z9 1646 aa9.92□□□□□ -0.82
SSR1-201ENST00000244763 CHMP7Q8WUX9 453 aaPredicted RBP9.91□□□□□ -0.82
SSR1-201ENST00000244763 NPM2Q86SE8 214 aaKnown RBP9.91□□□□□ -0.82
SSR1-201ENST00000244763 BCL11AQ9H165 835 aa9.9□□□□□ -0.82
SSR1-201ENST00000244763 HSP90AA1P07900 732 aaKnown RBP9.89□□□□□ -0.83
SSR1-201ENST00000244763 RB1CC1Q8TDY2 1594 aa9.86□□□□□ -0.83
SSR1-201ENST00000244763 WDR43Q15061 677 aaKnown RBP eCLIP9.85□□□□□ -0.83
SSR1-201ENST00000244763 PLPPR3Q6T4P5 718 aa9.85□□□□□ -0.83
SSR1-201ENST00000244763 TMC1Q8TDI8 760 aa9.85□□□□□ -0.83
SSR1-201ENST00000244763 MTUS2Q5JR59 1369 aa9.85□□□□□ -0.83
SSR1-201ENST00000244763 GRWD1Q9BQ67 446 aaKnown RBP eCLIP9.84□□□□□ -0.831e-10■■■□□ 14.7
SSR1-201ENST00000244763 RSF1Q96T23 1441 aaPredicted RBP9.82□□□□□ -0.84
SSR1-201ENST00000244763 SCAF1Q9H7N4 1312 aaKnown RBP9.8□□□□□ -0.84
SSR1-201ENST00000244763 MYH16Q9H6N6 1097 aa9.8□□□□□ -0.84
SSR1-201ENST00000244763 EIF5BO60841 1220 aaKnown RBP9.8□□□□□ -0.84
SSR1-201ENST00000244763 GTF3C3Q9Y5Q9 886 aa9.8□□□□□ -0.84
SSR1-201ENST00000244763 PLEKHD1A6NEE1 506 aa9.8□□□□□ -0.84
SSR1-201ENST00000244763 ZCCHC6Q5VYS8 1495 aaKnown RBP9.79□□□□□ -0.84
SSR1-201ENST00000244763 CDCA8Q53HL2 280 aa9.79□□□□□ -0.84
SSR1-201ENST00000244763 PPP1R15AO75807 674 aaPredicted RBP9.78□□□□□ -0.84
SSR1-201ENST00000244763 CDK11BP21127 795 aaKnown RBP9.78□□□□□ -0.84
SSR1-201ENST00000244763 HNRNPUQ00839 825 aaKnown RBP eCLIP9.76□□□□□ -0.85
SSR1-201ENST00000244763 EEA1Q15075 1411 aa9.76□□□□□ -0.85
SSR1-201ENST00000244763 C14orf37Q86TY3 774 aa9.75□□□□□ -0.85
SSR1-201ENST00000244763 CHIC2Q9UKJ5 165 aa9.75□□□□□ -0.85
SSR1-201ENST00000244763 HAP1P54257 671 aaPredicted RBP9.74□□□□□ -0.85
SSR1-201ENST00000244763 FAM9BQ8IZU0 186 aa9.74□□□□□ -0.85
SSR1-201ENST00000244763 KDM2AQ9Y2K7 1162 aa9.73□□□□□ -0.85
SSR1-201ENST00000244763 EIF4G2P78344 907 aaKnown RBP eCLIP9.73□□□□□ -0.85
SSR1-201ENST00000244763 NACADO15069 1562 aa9.73□□□□□ -0.85
SSR1-201ENST00000244763 CFAP53Q96M91 514 aa9.72□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 82.5 ms