RNA–Protein interactions for RNA: ENST00000493945.5

ACTB-213, Transcript of actin beta, humanhuman

TSL 5

Gene ACTB, Length 1,236 nt, Biotype retained intron, Subcellular localisation Cell leading edge, Cytoplasm, Cytosol, Exosome, Lamellipodium, Mitochondria, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACTB-213ENST00000493945 NISCHQ9Y2I1 1504 aa35.09■■■■□ 3.21
ACTB-213ENST00000493945 CCDC180Q9P1Z9 1646 aa31.13■■■□□ 2.57
ACTB-213ENST00000493945 ABCC9O60706 1549 aa29.78■■■□□ 2.36
ACTB-213ENST00000493945 ZCCHC6Q5VYS8 1495 aaKnown RBP29.36■■■□□ 2.29
ACTB-213ENST00000493945 DCAF1Q9Y4B6 1507 aa29.15■■■□□ 2.26
ACTB-213ENST00000493945 MYO15BQ96JP2 1530 aa29.11■■■□□ 2.25
ACTB-213ENST00000493945 NACADO15069 1562 aa29.11■■■□□ 2.25
ACTB-213ENST00000493945 DCAF8L2P0C7V8 631 aa29.08■■■□□ 2.25
ACTB-213ENST00000493945 RB1CC1Q8TDY2 1594 aa29.04■■■□□ 2.24
ACTB-213ENST00000493945 SCRIBQ14160 1630 aa28.32■■■□□ 2.12
ACTB-213ENST00000493945 UNC13AQ9UPW8 1703 aa28.28■■■□□ 2.12
ACTB-213ENST00000493945 SHROOM4Q9ULL8 1493 aa27.97■■■□□ 2.07
ACTB-213ENST00000493945 BICRAQ9NZM4 1560 aa27.94■■■□□ 2.06
ACTB-213ENST00000493945 PABPN1Q86U42 306 aaKnown RBP eCLIP27.82■■■□□ 2.04
ACTB-213ENST00000493945 EIF4G1Q04637 1599 aaKnown RBP27.26■■□□□ 1.96
ACTB-213ENST00000493945 BAZ1AQ9NRL2 1556 aaPredicted RBP27.26■■□□□ 1.96
ACTB-213ENST00000493945 SMARCA4P51532 1647 aa27.16■■□□□ 1.94
ACTB-213ENST00000493945 CECR2Q9BXF3 1484 aa27.15■■□□□ 1.94
ACTB-213ENST00000493945 CC2D2AQ9P2K1 1620 aa27.01■■□□□ 1.92
ACTB-213ENST00000493945 MROH2BQ7Z745 1585 aa26.98■■□□□ 1.91
ACTB-213ENST00000493945 SMARCA2P51531 1590 aa26.97■■□□□ 1.91
ACTB-213ENST00000493945 PEG3Q9GZU2 1588 aa26.9■■□□□ 1.9
ACTB-213ENST00000493945 RSF1Q96T23 1441 aaPredicted RBP26.86■■□□□ 1.89
ACTB-213ENST00000493945 ATAD2BQ9ULI0 1458 aa26.83■■□□□ 1.89
ACTB-213ENST00000493945 HMGXB3Q12766 1538 aa26.77■■□□□ 1.88
ACTB-213ENST00000493945 NCAPD3P42695 1498 aa26.75■■□□□ 1.87
ACTB-213ENST00000493945 WIZO95785 1651 aa26.75■■□□□ 1.87
ACTB-213ENST00000493945 BAZ1BQ9UIG0 1483 aaKnown RBP26.74■■□□□ 1.87
ACTB-213ENST00000493945 DNAJC5BQ9UF47 199 aa26.63■■□□□ 1.85
ACTB-213ENST00000493945 TOP2AP11388 1531 aaKnown RBP26.6■■□□□ 1.85
ACTB-213ENST00000493945 SUPT5HO00267 1087 aaKnown RBP26.57■■□□□ 1.84
ACTB-213ENST00000493945 CCDC88BA6NC98 1476 aa26.17■■□□□ 1.78
ACTB-213ENST00000493945 LAMC3Q9Y6N6 1575 aa26.08■■□□□ 1.77
ACTB-213ENST00000493945 CADPSQ9ULU8 1353 aa26.01■■□□□ 1.75
ACTB-213ENST00000493945 PRDM2Q13029 1718 aa25.98■■□□□ 1.75
ACTB-213ENST00000493945 CFTRP13569 1480 aa25.96■■□□□ 1.75
ACTB-213ENST00000493945 PDS5BQ9NTI5 1447 aa25.88■■□□□ 1.73
ACTB-213ENST00000493945 NESP48681 1621 aa25.85■■□□□ 1.73
ACTB-213ENST00000493945 ERCC6Q03468 1493 aa25.78■■□□□ 1.72
ACTB-213ENST00000493945 FANCD2Q9BXW9 1451 aa25.73■■□□□ 1.71
ACTB-213ENST00000493945 CEP164Q9UPV0 1460 aa25.72■■□□□ 1.71
ACTB-213ENST00000493945 KIF21AQ7Z4S6 1674 aa25.7■■□□□ 1.7
ACTB-213ENST00000493945 MRC2Q9UBG0 1479 aa25.55■■□□□ 1.68
ACTB-213ENST00000493945 ABCC8Q09428 1581 aa25.53■■□□□ 1.68
ACTB-213ENST00000493945 THOC2Q8NI27 1593 aaKnown RBP25.48■■□□□ 1.67
ACTB-213ENST00000493945 DNMBPQ6XZF7 1577 aa25.45■■□□□ 1.66
ACTB-213ENST00000493945 WDR62O43379 1518 aa25.43■■□□□ 1.66
ACTB-213ENST00000493945 WRNQ14191 1432 aaPredicted RBP eCLIP25.42■■□□□ 1.66
ACTB-213ENST00000493945 URB2Q14146 1524 aaKnown RBP25.37■■□□□ 1.65
ACTB-213ENST00000493945 TOPBP1Q92547 1522 aa25.37■■□□□ 1.65
ACTB-213ENST00000493945 BIVM-ERCC5R4GMW8 1640 aa25.33■■□□□ 1.65
ACTB-213ENST00000493945 TOP2BQ02880 1626 aa25.32■■□□□ 1.64
ACTB-213ENST00000493945 CUX2O14529 1486 aa25.32■■□□□ 1.64
ACTB-213ENST00000493945 CUX1P39880 1505 aa25.31■■□□□ 1.64
ACTB-213ENST00000493945 SYNJ1O43426 1573 aa25.26■■□□□ 1.63
ACTB-213ENST00000493945 FGD5Q6ZNL6 1462 aa25.2■■□□□ 1.62
ACTB-213ENST00000493945 POLA1P09884 1462 aaPredicted RBP25.17■■□□□ 1.62
ACTB-213ENST00000493945 TRIM41Q8WV44 630 aa25.16■■□□□ 1.62
ACTB-213ENST00000493945 IFT140Q96RY7 1462 aa25.15■■□□□ 1.62
ACTB-213ENST00000493945 SOGA1O94964 1423 aa25.08■■□□□ 1.61
ACTB-213ENST00000493945 WDR97A6NE52 1622 aa25.06■■□□□ 1.6
ACTB-213ENST00000493945 CHIC1Q5VXU3 224 aa25.04■■□□□ 1.6
ACTB-213ENST00000493945 TARBP1Q13395 1621 aaKnown RBP25.03■■□□□ 1.6
ACTB-213ENST00000493945 ABCA10Q8WWZ4 1543 aa25.01■■□□□ 1.59
ACTB-213ENST00000493945 RAD54L2Q9Y4B4 1467 aa24.98■■□□□ 1.59
ACTB-213ENST00000493945 EIF4G3O43432 1585 aaKnown RBP24.89■■□□□ 1.58
ACTB-213ENST00000493945 KIF27Q86VH2 1401 aa24.89■■□□□ 1.58
ACTB-213ENST00000493945 ABCA5Q8WWZ7 1642 aa24.86■■□□□ 1.57
ACTB-213ENST00000493945 GAPVD1Q14C86 1478 aa24.83■■□□□ 1.57
ACTB-213ENST00000493945 ZNF608Q9ULD9 1512 aaPredicted RBP24.83■■□□□ 1.57
ACTB-213ENST00000493945 EEA1Q15075 1411 aa24.83■■□□□ 1.57
ACTB-213ENST00000493945 PBRM1Q86U86 1689 aa24.81■■□□□ 1.56
ACTB-213ENST00000493945 TDRD9Q8NDG6 1382 aaKnown RBP24.8■■□□□ 1.56
ACTB-213ENST00000493945 GRIN2BQ13224 1484 aa24.79■■□□□ 1.56
ACTB-213ENST00000493945 AQRO60306 1485 aaKnown RBP eCLIP24.77■■□□□ 1.563e-23■■■■■ 40.2
ACTB-213ENST00000493945 ERICH3Q5RHP9 1530 aa24.76■■□□□ 1.55
ACTB-213ENST00000493945 MAGI1Q96QZ7 1491 aaPredicted RBP24.71■■□□□ 1.55
ACTB-213ENST00000493945 CUL7Q14999 1698 aa24.71■■□□□ 1.55
ACTB-213ENST00000493945 SNAPC4Q5SXM2 1469 aa24.64■■□□□ 1.54
ACTB-213ENST00000493945 ADAMTS12P58397 1594 aa24.61■■□□□ 1.53
ACTB-213ENST00000493945 FHAD1B1AJZ9 1412 aa24.59■■□□□ 1.53
ACTB-213ENST00000493945 IGF1RP08069 1367 aa24.57■■□□□ 1.52
ACTB-213ENST00000493945 RUSC2Q8N2Y8 1516 aa24.57■■□□□ 1.52
ACTB-213ENST00000493945 SYNJ2O15056 1496 aa24.57■■□□□ 1.52
ACTB-213ENST00000493945 CSRNP3Q8WYN3 585 aa24.55■■□□□ 1.52
ACTB-213ENST00000493945 CARMIL1Q5VZK9 1371 aa24.52■■□□□ 1.52
ACTB-213ENST00000493945 FAM9AQ8IZU1 332 aaPredicted RBP24.51■■□□□ 1.51
ACTB-213ENST00000493945 CHMP7Q8WUX9 453 aaPredicted RBP24.5■■□□□ 1.51
ACTB-213ENST00000493945 CHD1O14646 1710 aa24.49■■□□□ 1.51
ACTB-213ENST00000493945 RAPGEF2Q9Y4G8 1499 aa24.48■■□□□ 1.51
ACTB-213ENST00000493945 KIF21BO75037 1637 aa24.47■■□□□ 1.51
ACTB-213ENST00000493945 FBLN2P98095 1184 aa24.45■■□□□ 1.5
ACTB-213ENST00000493945 GRIN2AQ12879 1464 aa24.45■■□□□ 1.5
ACTB-213ENST00000493945 PRXQ9BXM0 1461 aa24.45■■□□□ 1.5
ACTB-213ENST00000493945 GOLGA3Q08378 1498 aa24.38■■□□□ 1.49
ACTB-213ENST00000493945 CTTNBP2Q8WZ74 1663 aa24.3■■□□□ 1.48
ACTB-213ENST00000493945 NUP160Q12769 1436 aa24.29■■□□□ 1.48
ACTB-213ENST00000493945 OSCARQ8IYS5 282 aa24.29■■□□□ 1.48
ACTB-213ENST00000493945 CEP170Q5SW79 1584 aa24.25■■□□□ 1.47
ACTB-213ENST00000493945 KIAA0586Q9BVV6 1533 aa24.21■■□□□ 1.47
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms