RNA–Protein interactions for RNA: ENST00000557496.1

FOXN3-216, Transcript of forkhead box N3, humanhuman

TSL 5

Gene FOXN3, Length 228 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN3-216ENST00000557496 AEBP2Q6ZN18 517 aaPredicted RBP19.38■□□□□ 0.69
FOXN3-216ENST00000557496 CHIC1Q5VXU3 224 aa18.5■□□□□ 0.55
FOXN3-216ENST00000557496 SENP3Q9H4L4 574 aaPredicted RBP16.49■□□□□ 0.23
FOXN3-216ENST00000557496 PHF23Q9BUL5 403 aaPredicted RBP16.28■□□□□ 0.2
FOXN3-216ENST00000557496 FOXD1Q16676 465 aa15.36■□□□□ 0.05
FOXN3-216ENST00000557496 PLPPR3Q6T4P5 718 aa14.82□□□□□ -0.04
FOXN3-216ENST00000557496 PPP6R1Q9UPN7 881 aa14.45□□□□□ -0.1
FOXN3-216ENST00000557496 ADRA2BP18089 450 aa14.39□□□□□ -0.11
FOXN3-216ENST00000557496 PIAS4Q8N2W9 510 aaPredicted RBP14.37□□□□□ -0.11
FOXN3-216ENST00000557496 MSH5O43196 834 aa14.34□□□□□ -0.11
FOXN3-216ENST00000557496 POTEDQ86YR6 584 aa13.81□□□□□ -0.2
FOXN3-216ENST00000557496 MAPK8IP2Q13387 824 aaPredicted RBP13.19□□□□□ -0.3
FOXN3-216ENST00000557496 SCAF1Q9H7N4 1312 aaKnown RBP13.15□□□□□ -0.3
FOXN3-216ENST00000557496 DMRT2Q9Y5R5 561 aa13.11□□□□□ -0.31
FOXN3-216ENST00000557496 PPP4R3CPQ6ZMV5 832 aa13□□□□□ -0.33
FOXN3-216ENST00000557496 CNKSR2Q8WXI2 1034 aa12.74□□□□□ -0.37
FOXN3-216ENST00000557496 HOXD11P31277 338 aaPredicted RBP12.67□□□□□ -0.38
FOXN3-216ENST00000557496 RNF216Q9NWF9 866 aaPredicted RBP12.6□□□□□ -0.39
FOXN3-216ENST00000557496 DCAF8L1A6NGE4 600 aa12.51□□□□□ -0.41
FOXN3-216ENST00000557496 NCBP3Q53F19 620 aaKnown RBP12.51□□□□□ -0.41
FOXN3-216ENST00000557496 NPM3O75607 178 aaKnown RBP12.37□□□□□ -0.43
FOXN3-216ENST00000557496 RNF39Q9H2S5 420 aa12.25□□□□□ -0.45
FOXN3-216ENST00000557496 DNAJC5BQ9UF47 199 aa12.23□□□□□ -0.45
FOXN3-216ENST00000557496 KCNA4P22459 653 aa12.22□□□□□ -0.45
FOXN3-216ENST00000557496 CACNB1Q02641 598 aaPredicted RBP12.2□□□□□ -0.46
FOXN3-216ENST00000557496 C1QBPQ07021 282 aaKnown RBP12.07□□□□□ -0.48
FOXN3-216ENST00000557496 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.03□□□□□ -0.48
FOXN3-216ENST00000557496 U3KPZ7 1027 aaPredicted RBP11.83□□□□□ -0.52
FOXN3-216ENST00000557496 SLC4A2P04920 1241 aa11.78□□□□□ -0.52
FOXN3-216ENST00000557496 SPINK5Q9NQ38 1064 aaPredicted RBP11.61□□□□□ -0.55
FOXN3-216ENST00000557496 CAPN15O75808 1086 aa11.56□□□□□ -0.56
FOXN3-216ENST00000557496 SLC4A1APQ9BWU0 796 aaKnown RBP11.55□□□□□ -0.56
FOXN3-216ENST00000557496 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.51□□□□□ -0.57
FOXN3-216ENST00000557496 DSG3P32926 999 aa11.51□□□□□ -0.57
FOXN3-216ENST00000557496 HNRNPUL2Q1KMD3 747 aaKnown RBP11.51□□□□□ -0.57
FOXN3-216ENST00000557496 APLP2Q06481 763 aa11.49□□□□□ -0.57
FOXN3-216ENST00000557496 SAMD1Q6SPF0 538 aaPredicted RBP11.46□□□□□ -0.57
FOXN3-216ENST00000557496 MYCNP04198 464 aaPredicted RBP11.43□□□□□ -0.58
FOXN3-216ENST00000557496 ZNF219Q9P2Y4 722 aaPredicted RBP11.42□□□□□ -0.58
FOXN3-216ENST00000557496 TRHP20396 242 aaPredicted RBP11.4□□□□□ -0.58
FOXN3-216ENST00000557496 FOXD4L1Q9NU39 408 aa11.38□□□□□ -0.59
FOXN3-216ENST00000557496 ABCB7O75027 752 aa11.32□□□□□ -0.6
FOXN3-216ENST00000557496 ZBTB22O15209 634 aa11.26□□□□□ -0.61
FOXN3-216ENST00000557496 ATF5Q9Y2D1 282 aaPredicted RBP11.17□□□□□ -0.62
FOXN3-216ENST00000557496 POLA2Q14181 598 aa11.13□□□□□ -0.63
FOXN3-216ENST00000557496 ATXN8OSP0DMR3 200 aa11.02□□□□□ -0.65
FOXN3-216ENST00000557496 RBM42Q9BTD8 480 aaKnown RBP10.96□□□□□ -0.65
FOXN3-216ENST00000557496 ZBTB12Q9Y330 459 aaPredicted RBP10.93□□□□□ -0.66
FOXN3-216ENST00000557496 POTEHQ6S545 545 aa10.84□□□□□ -0.67
FOXN3-216ENST00000557496 CSRNP3Q8WYN3 585 aa10.82□□□□□ -0.68
FOXN3-216ENST00000557496 OSCARQ8IYS5 282 aa10.8□□□□□ -0.68
FOXN3-216ENST00000557496 AKT1S1Q96B36 256 aa10.74□□□□□ -0.69
FOXN3-216ENST00000557496 EHMT2Q96KQ7 1210 aa10.72□□□□□ -0.69
FOXN3-216ENST00000557496 FBLN2P98095 1184 aa10.69□□□□□ -0.7
FOXN3-216ENST00000557496 CHRDL2Q6WN34 429 aa10.68□□□□□ -0.7
FOXN3-216ENST00000557496 MKRN4PQ13434 485 aaPredicted RBP10.66□□□□□ -0.7
FOXN3-216ENST00000557496 REM2Q8IYK8 340 aaPredicted RBP10.63□□□□□ -0.71
FOXN3-216ENST00000557496 SPDYE2BA6NHP3 402 aa10.6□□□□□ -0.71
FOXN3-216ENST00000557496 SPDYE6P0CI01 402 aa10.6□□□□□ -0.71
FOXN3-216ENST00000557496 SPDYE2Q495Y8 402 aa10.6□□□□□ -0.71
FOXN3-216ENST00000557496 PITPNM1O00562 1244 aa10.53□□□□□ -0.72
FOXN3-216ENST00000557496 SSUH2Q9Y2M2 353 aa10.5□□□□□ -0.73
FOXN3-216ENST00000557496 ZNF692Q9BU19 519 aaPredicted RBP10.48□□□□□ -0.73
FOXN3-216ENST00000557496 PIP4P2Q8N4L2 257 aa10.46□□□□□ -0.73
FOXN3-216ENST00000557496 FXR2P51116 673 aaKnown RBP eCLIP10.42□□□□□ -0.74
FOXN3-216ENST00000557496 SPDYE1Q8NFV5 336 aaPredicted RBP10.38□□□□□ -0.75
FOXN3-216ENST00000557496 CLEC11AQ9Y240 323 aa10.34□□□□□ -0.75
FOXN3-216ENST00000557496 PABPN1Q86U42 306 aaKnown RBP eCLIP10.33□□□□□ -0.76
FOXN3-216ENST00000557496 PRKAR2AP13861 404 aaKnown RBP10.24□□□□□ -0.77
FOXN3-216ENST00000557496 SP7Q8TDD2 431 aaPredicted RBP10.22□□□□□ -0.77
FOXN3-216ENST00000557496 HAX1O00165 279 aa10.2□□□□□ -0.78
FOXN3-216ENST00000557496 SPDYE4A6NLX3 237 aa10.19□□□□□ -0.78
FOXN3-216ENST00000557496 PRR29P0C7W0 189 aa10.19□□□□□ -0.78
FOXN3-216ENST00000557496 CHADLQ6NUI6 762 aa10.15□□□□□ -0.78
FOXN3-216ENST00000557496 EVX2Q03828 476 aa10.12□□□□□ -0.79
FOXN3-216ENST00000557496 C19orf67A6NJJ6 358 aa10.08□□□□□ -0.8
FOXN3-216ENST00000557496 STAG3Q9UJ98 1225 aa10.06□□□□□ -0.8
FOXN3-216ENST00000557496 FARP1Q9Y4F1 1045 aaPredicted RBP10.02□□□□□ -0.81
FOXN3-216ENST00000557496 PROM2Q8N271 834 aa10.01□□□□□ -0.81
FOXN3-216ENST00000557496 CREBZFQ9NS37 354 aa9.99□□□□□ -0.81
FOXN3-216ENST00000557496 CD44P16070 742 aaKnown RBP9.93□□□□□ -0.82
FOXN3-216ENST00000557496 GABBR2O75899 941 aa9.89□□□□□ -0.83
FOXN3-216ENST00000557496 MNX1P50219 401 aaPredicted RBP9.85□□□□□ -0.83
FOXN3-216ENST00000557496 ZNF579Q8NAF0 562 aaKnown RBP9.8□□□□□ -0.84
FOXN3-216ENST00000557496 ZRANB1Q9UGI0 708 aa9.8□□□□□ -0.84
FOXN3-216ENST00000557496 FKBP8Q14318 412 aa9.79□□□□□ -0.84
FOXN3-216ENST00000557496 NPM1P06748 294 aaKnown RBP eCLIP9.78□□□□□ -0.84
FOXN3-216ENST00000557496 CLCN6P51797 869 aa9.78□□□□□ -0.84
FOXN3-216ENST00000557496 PAK3O75914 559 aaPredicted RBP9.73□□□□□ -0.85
FOXN3-216ENST00000557496 POTEIP0CG38 1075 aa9.69□□□□□ -0.86
FOXN3-216ENST00000557496 MIER1Q8N108 512 aa9.68□□□□□ -0.86
FOXN3-216ENST00000557496 PHF12Q96QT6 1004 aa9.68□□□□□ -0.86
FOXN3-216ENST00000557496 PLEKHG5O94827 1062 aa9.67□□□□□ -0.86
FOXN3-216ENST00000557496 GALR2O43603 387 aaPredicted RBP9.66□□□□□ -0.86
FOXN3-216ENST00000557496 DCBLD2Q96PD2 775 aa9.63□□□□□ -0.87
FOXN3-216ENST00000557496 PLCD3Q8N3E9 789 aa9.62□□□□□ -0.87
FOXN3-216ENST00000557496 TSPYL2Q9H2G4 693 aaPredicted RBP9.61□□□□□ -0.87
FOXN3-216ENST00000557496 CCDC61Q9Y6R9 512 aa9.6□□□□□ -0.87
FOXN3-216ENST00000557496 RASEFQ8IZ41 740 aa9.58□□□□□ -0.88
FOXN3-216ENST00000557496 LHX8Q68G74 356 aa9.57□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 1221.5 ms