RNA–Protein interactions for RNA: ENST00000555353.5

FOXN3-209, Transcript of forkhead box N3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene FOXN3, Length 1,595 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN3-209ENST00000555353 NISCHQ9Y2I1 1504 aa49.47■■■■■ 5.51
FOXN3-209ENST00000555353 CCDC180Q9P1Z9 1646 aa43.96■■■■■ 4.63
FOXN3-209ENST00000555353 ABCC9O60706 1549 aa42.9■■■■■ 4.46
FOXN3-209ENST00000555353 DCAF8L2P0C7V8 631 aa41.36■■■■■ 4.21
FOXN3-209ENST00000555353 RB1CC1Q8TDY2 1594 aa41.33■■■■■ 4.21
FOXN3-209ENST00000555353 NACADO15069 1562 aa41.29■■■■■ 4.2
FOXN3-209ENST00000555353 ZCCHC6Q5VYS8 1495 aaKnown RBP41.23■■■■■ 4.19
FOXN3-209ENST00000555353 MYO15BQ96JP2 1530 aa41.06■■■■■ 4.16
FOXN3-209ENST00000555353 DCAF1Q9Y4B6 1507 aa40.93■■■■■ 4.14
FOXN3-209ENST00000555353 UNC13AQ9UPW8 1703 aa40.41■■■■■ 4.06
FOXN3-209ENST00000555353 SCRIBQ14160 1630 aa40.13■■■■■ 4.01
FOXN3-209ENST00000555353 PABPN1Q86U42 306 aaKnown RBP eCLIP40.1■■■■■ 4.01
FOXN3-209ENST00000555353 BICRAQ9NZM4 1560 aa40.02■■■■■ 4
FOXN3-209ENST00000555353 SHROOM4Q9ULL8 1493 aa39.63■■■■□ 3.94
FOXN3-209ENST00000555353 DNAJC5BQ9UF47 199 aa39.2■■■■□ 3.87
FOXN3-209ENST00000555353 EIF4G1Q04637 1599 aaKnown RBP38.99■■■■□ 3.83
FOXN3-209ENST00000555353 CC2D2AQ9P2K1 1620 aa38.81■■■■□ 3.8
FOXN3-209ENST00000555353 CECR2Q9BXF3 1484 aa38.52■■■■□ 3.76
FOXN3-209ENST00000555353 SMARCA4P51532 1647 aa38.38■■■■□ 3.73
FOXN3-209ENST00000555353 BAZ1AQ9NRL2 1556 aaPredicted RBP38.36■■■■□ 3.73
FOXN3-209ENST00000555353 ATAD2BQ9ULI0 1458 aa38.12■■■■□ 3.69
FOXN3-209ENST00000555353 MROH2BQ7Z745 1585 aa38.12■■■■□ 3.69
FOXN3-209ENST00000555353 SMARCA2P51531 1590 aa38.11■■■■□ 3.69
FOXN3-209ENST00000555353 NCAPD3P42695 1498 aa38.07■■■■□ 3.69
FOXN3-209ENST00000555353 PEG3Q9GZU2 1588 aa37.98■■■■□ 3.67
FOXN3-209ENST00000555353 HMGXB3Q12766 1538 aa37.92■■■■□ 3.66
FOXN3-209ENST00000555353 BAZ1BQ9UIG0 1483 aaKnown RBP37.85■■■■□ 3.65
FOXN3-209ENST00000555353 WIZO95785 1651 aa37.74■■■■□ 3.63
FOXN3-209ENST00000555353 RSF1Q96T23 1441 aaPredicted RBP37.73■■■■□ 3.63
FOXN3-209ENST00000555353 TOP2AP11388 1531 aaKnown RBP37.35■■■■□ 3.57
FOXN3-209ENST00000555353 NESP48681 1621 aa37.13■■■■□ 3.53
FOXN3-209ENST00000555353 LAMC3Q9Y6N6 1575 aa37.09■■■■□ 3.53
FOXN3-209ENST00000555353 ERCC6Q03468 1493 aa37■■■■□ 3.51
FOXN3-209ENST00000555353 CADPSQ9ULU8 1353 aa36.98■■■■□ 3.51
FOXN3-209ENST00000555353 SUPT5HO00267 1087 aaKnown RBP36.92■■■■□ 3.5
FOXN3-209ENST00000555353 CCDC88BA6NC98 1476 aa36.89■■■■□ 3.5
FOXN3-209ENST00000555353 PDS5BQ9NTI5 1447 aa36.84■■■■□ 3.49
FOXN3-209ENST00000555353 CFTRP13569 1480 aa36.79■■■■□ 3.48
FOXN3-209ENST00000555353 KIF21AQ7Z4S6 1674 aa36.74■■■■□ 3.47
FOXN3-209ENST00000555353 PRDM2Q13029 1718 aa36.59■■■■□ 3.45
FOXN3-209ENST00000555353 FANCD2Q9BXW9 1451 aa36.58■■■■□ 3.45
FOXN3-209ENST00000555353 THOC2Q8NI27 1593 aaKnown RBP36.55■■■■□ 3.44
FOXN3-209ENST00000555353 CEP164Q9UPV0 1460 aa36.53■■■■□ 3.44
FOXN3-209ENST00000555353 CUX2O14529 1486 aa36.52■■■■□ 3.44
FOXN3-209ENST00000555353 MRC2Q9UBG0 1479 aa36.44■■■■□ 3.42
FOXN3-209ENST00000555353 WDR62O43379 1518 aa36.3■■■■□ 3.4
FOXN3-209ENST00000555353 URB2Q14146 1524 aaKnown RBP36.18■■■■□ 3.38
FOXN3-209ENST00000555353 ABCC8Q09428 1581 aa36.03■■■■□ 3.36
FOXN3-209ENST00000555353 TOPBP1Q92547 1522 aa36■■■■□ 3.35
FOXN3-209ENST00000555353 DNMBPQ6XZF7 1577 aa35.98■■■■□ 3.35
FOXN3-209ENST00000555353 CUX1P39880 1505 aa35.77■■■■□ 3.32
FOXN3-209ENST00000555353 IFT140Q96RY7 1462 aa35.75■■■■□ 3.31
FOXN3-209ENST00000555353 POLA1P09884 1462 aaPredicted RBP35.69■■■■□ 3.3
FOXN3-209ENST00000555353 FGD5Q6ZNL6 1462 aa35.65■■■■□ 3.3
FOXN3-209ENST00000555353 WRNQ14191 1432 aaPredicted RBP eCLIP35.6■■■■□ 3.29
FOXN3-209ENST00000555353 TARBP1Q13395 1621 aaKnown RBP35.59■■■■□ 3.29
FOXN3-209ENST00000555353 SOGA1O94964 1423 aa35.56■■■■□ 3.28
FOXN3-209ENST00000555353 ZNF608Q9ULD9 1512 aaPredicted RBP35.56■■■■□ 3.28
FOXN3-209ENST00000555353 RAD54L2Q9Y4B4 1467 aa35.54■■■■□ 3.28
FOXN3-209ENST00000555353 TOP2BQ02880 1626 aa35.51■■■■□ 3.27
FOXN3-209ENST00000555353 BIVM-ERCC5R4GMW8 1640 aa35.51■■■■□ 3.27
FOXN3-209ENST00000555353 SYNJ1O43426 1573 aa35.49■■■■□ 3.27
FOXN3-209ENST00000555353 EIF4G3O43432 1585 aaKnown RBP35.46■■■■□ 3.27
FOXN3-209ENST00000555353 AQRO60306 1485 aaKnown RBP eCLIP35.39■■■■□ 3.264e-7■■■□□ 16.7
FOXN3-209ENST00000555353 TDRD9Q8NDG6 1382 aaKnown RBP35.35■■■■□ 3.25
FOXN3-209ENST00000555353 WDR97A6NE52 1622 aa35.33■■■■□ 3.25
FOXN3-209ENST00000555353 ABCA10Q8WWZ4 1543 aa35.29■■■■□ 3.24
FOXN3-209ENST00000555353 DNAJC5Q9H3Z4 198 aa35.25■■■■□ 3.23
FOXN3-209ENST00000555353 GAPVD1Q14C86 1478 aa35.16■■■■□ 3.22
FOXN3-209ENST00000555353 ABCA5Q8WWZ7 1642 aa35.14■■■■□ 3.22
FOXN3-209ENST00000555353 GRIN2BQ13224 1484 aa35.13■■■■□ 3.22
FOXN3-209ENST00000555353 PBRM1Q86U86 1689 aa35.11■■■■□ 3.21
FOXN3-209ENST00000555353 SNAPC4Q5SXM2 1469 aa35.07■■■■□ 3.2
FOXN3-209ENST00000555353 OSCARQ8IYS5 282 aa35.05■■■■□ 3.2
FOXN3-209ENST00000555353 MAGI1Q96QZ7 1491 aaPredicted RBP35.04■■■■□ 3.2
FOXN3-209ENST00000555353 CHD1O14646 1710 aa35.01■■■■□ 3.19
FOXN3-209ENST00000555353 FBLN2P98095 1184 aa35■■■■□ 3.19
FOXN3-209ENST00000555353 CHMP7Q8WUX9 453 aaPredicted RBP34.9■■■■□ 3.18
FOXN3-209ENST00000555353 SYNJ2O15056 1496 aa34.9■■■■□ 3.18
FOXN3-209ENST00000555353 ERICH3Q5RHP9 1530 aa34.88■■■■□ 3.17
FOXN3-209ENST00000555353 TRIM41Q8WV44 630 aa34.87■■■■□ 3.17
FOXN3-209ENST00000555353 KIF27Q86VH2 1401 aa34.86■■■■□ 3.17
FOXN3-209ENST00000555353 ADAMTS12P58397 1594 aa34.81■■■■□ 3.16
FOXN3-209ENST00000555353 FHAD1B1AJZ9 1412 aa34.75■■■■□ 3.15
FOXN3-209ENST00000555353 GRIN2AQ12879 1464 aa34.69■■■■□ 3.14
FOXN3-209ENST00000555353 IGF1RP08069 1367 aa34.66■■■■□ 3.14
FOXN3-209ENST00000555353 CUL7Q14999 1698 aa34.62■■■■□ 3.13
FOXN3-209ENST00000555353 CLASP1Q7Z460 1538 aa34.58■■■■□ 3.13
FOXN3-209ENST00000555353 RUSC2Q8N2Y8 1516 aa34.54■■■■□ 3.12
FOXN3-209ENST00000555353 NUP160Q12769 1436 aa34.51■■■■□ 3.11
FOXN3-209ENST00000555353 CEP170Q5SW79 1584 aa34.5■■■■□ 3.11
FOXN3-209ENST00000555353 CARMIL1Q5VZK9 1371 aa34.48■■■■□ 3.11
FOXN3-209ENST00000555353 CHIC1Q5VXU3 224 aa34.48■■■■□ 3.11
FOXN3-209ENST00000555353 RIMBP3CA6NJZ7 1639 aa34.47■■■■□ 3.11
FOXN3-209ENST00000555353 RIMBP3BA6NNM3 1639 aa34.47■■■■□ 3.11
FOXN3-209ENST00000555353 RIMBP3Q9UFD9 1639 aa34.47■■■■□ 3.11
FOXN3-209ENST00000555353 ARHGEF11O15085 1522 aa34.47■■■■□ 3.11
FOXN3-209ENST00000555353 RAPGEF2Q9Y4G8 1499 aa34.3■■■■□ 3.08
FOXN3-209ENST00000555353 EEA1Q15075 1411 aa34.27■■■■□ 3.08
FOXN3-209ENST00000555353 SHROOM2Q13796 1616 aa34.24■■■■□ 3.07
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms