RNA–Protein interactions for RNA: ENST00000553840.5

FOXN3-204, Transcript of forkhead box N3, humanhuman

TSL 4

Gene FOXN3, Length 555 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN3-204ENST00000553840 NISCHQ9Y2I1 1504 aa43.63■■■■■ 4.57
FOXN3-204ENST00000553840 CCDC180Q9P1Z9 1646 aa39.06■■■■□ 3.84
FOXN3-204ENST00000553840 ABCC9O60706 1549 aa38.59■■■■□ 3.77
FOXN3-204ENST00000553840 RB1CC1Q8TDY2 1594 aa36.99■■■■□ 3.51
FOXN3-204ENST00000553840 NACADO15069 1562 aa36.82■■■■□ 3.48
FOXN3-204ENST00000553840 DCAF8L2P0C7V8 631 aa36.72■■■■□ 3.47
FOXN3-204ENST00000553840 MYO15BQ96JP2 1530 aa36.43■■■■□ 3.42
FOXN3-204ENST00000553840 ZCCHC6Q5VYS8 1495 aaKnown RBP36.23■■■■□ 3.39
FOXN3-204ENST00000553840 UNC13AQ9UPW8 1703 aa36.13■■■■□ 3.37
FOXN3-204ENST00000553840 DCAF1Q9Y4B6 1507 aa36.08■■■■□ 3.37
FOXN3-204ENST00000553840 PABPN1Q86U42 306 aaKnown RBP eCLIP35.97■■■■□ 3.35
FOXN3-204ENST00000553840 BICRAQ9NZM4 1560 aa35.79■■■■□ 3.32
FOXN3-204ENST00000553840 DNAJC5BQ9UF47 199 aa35.77■■■■□ 3.32
FOXN3-204ENST00000553840 SCRIBQ14160 1630 aa35.55■■■■□ 3.28
FOXN3-204ENST00000553840 SHROOM4Q9ULL8 1493 aa35.46■■■■□ 3.27
FOXN3-204ENST00000553840 EIF4G1Q04637 1599 aaKnown RBP34.93■■■■□ 3.18
FOXN3-204ENST00000553840 CC2D2AQ9P2K1 1620 aa34.92■■■■□ 3.18
FOXN3-204ENST00000553840 CECR2Q9BXF3 1484 aa34.75■■■■□ 3.15
FOXN3-204ENST00000553840 SMARCA4P51532 1647 aa33.97■■■■□ 3.03
FOXN3-204ENST00000553840 NCAPD3P42695 1498 aa33.94■■■■□ 3.02
FOXN3-204ENST00000553840 BAZ1AQ9NRL2 1556 aaPredicted RBP33.89■■■■□ 3.02
FOXN3-204ENST00000553840 ATAD2BQ9ULI0 1458 aa33.88■■■■□ 3.01
FOXN3-204ENST00000553840 SMARCA2P51531 1590 aa33.87■■■■□ 3.01
FOXN3-204ENST00000553840 HMGXB3Q12766 1538 aa33.75■■■□□ 2.99
FOXN3-204ENST00000553840 PEG3Q9GZU2 1588 aa33.64■■■□□ 2.98
FOXN3-204ENST00000553840 BAZ1BQ9UIG0 1483 aaKnown RBP33.62■■■□□ 2.97
FOXN3-204ENST00000553840 MROH2BQ7Z745 1585 aa33.59■■■□□ 2.97
FOXN3-204ENST00000553840 ERCC6Q03468 1493 aa33.37■■■□□ 2.93
FOXN3-204ENST00000553840 WIZO95785 1651 aa33.25■■■□□ 2.91
FOXN3-204ENST00000553840 NESP48681 1621 aa33.24■■■□□ 2.91
FOXN3-204ENST00000553840 LAMC3Q9Y6N6 1575 aa33.17■■■□□ 2.9
FOXN3-204ENST00000553840 CUX2O14529 1486 aa33.16■■■□□ 2.9
FOXN3-204ENST00000553840 RSF1Q96T23 1441 aaPredicted RBP33.04■■■□□ 2.88
FOXN3-204ENST00000553840 PDS5BQ9NTI5 1447 aa32.96■■■□□ 2.87
FOXN3-204ENST00000553840 CADPSQ9ULU8 1353 aa32.94■■■□□ 2.86
FOXN3-204ENST00000553840 KIF21AQ7Z4S6 1674 aa32.9■■■□□ 2.86
FOXN3-204ENST00000553840 THOC2Q8NI27 1593 aaKnown RBP32.86■■■□□ 2.85
FOXN3-204ENST00000553840 TOP2AP11388 1531 aaKnown RBP32.86■■■□□ 2.85
FOXN3-204ENST00000553840 DNAJC5Q9H3Z4 198 aa32.65■■■□□ 2.82
FOXN3-204ENST00000553840 CFTRP13569 1480 aa32.63■■■□□ 2.81
FOXN3-204ENST00000553840 MRC2Q9UBG0 1479 aa32.62■■■□□ 2.81
FOXN3-204ENST00000553840 CEP164Q9UPV0 1460 aa32.59■■■□□ 2.81
FOXN3-204ENST00000553840 FANCD2Q9BXW9 1451 aa32.56■■■□□ 2.8
FOXN3-204ENST00000553840 WDR62O43379 1518 aa32.51■■■□□ 2.8
FOXN3-204ENST00000553840 CCDC88BA6NC98 1476 aa32.46■■■□□ 2.79
FOXN3-204ENST00000553840 PRDM2Q13029 1718 aa32.45■■■□□ 2.78
FOXN3-204ENST00000553840 URB2Q14146 1524 aaKnown RBP32.23■■■□□ 2.75
FOXN3-204ENST00000553840 ABCC8Q09428 1581 aa32.02■■■□□ 2.72
FOXN3-204ENST00000553840 TOPBP1Q92547 1522 aa31.98■■■□□ 2.71
FOXN3-204ENST00000553840 DNMBPQ6XZF7 1577 aa31.93■■■□□ 2.7
FOXN3-204ENST00000553840 SUPT5HO00267 1087 aaKnown RBP31.92■■■□□ 2.7
FOXN3-204ENST00000553840 IFT140Q96RY7 1462 aa31.91■■■□□ 2.7
FOXN3-204ENST00000553840 ZNF608Q9ULD9 1512 aaPredicted RBP31.75■■■□□ 2.67
FOXN3-204ENST00000553840 OSCARQ8IYS5 282 aa31.72■■■□□ 2.67
FOXN3-204ENST00000553840 POLA1P09884 1462 aaPredicted RBP31.67■■■□□ 2.66
FOXN3-204ENST00000553840 TARBP1Q13395 1621 aaKnown RBP31.67■■■□□ 2.66
FOXN3-204ENST00000553840 EIF4G3O43432 1585 aaKnown RBP31.66■■■□□ 2.66
FOXN3-204ENST00000553840 SOGA1O94964 1423 aa31.56■■■□□ 2.64
FOXN3-204ENST00000553840 CUX1P39880 1505 aa31.54■■■□□ 2.64
FOXN3-204ENST00000553840 AQRO60306 1485 aaKnown RBP eCLIP31.54■■■□□ 2.644e-7■■■□□ 16.7
FOXN3-204ENST00000553840 FGD5Q6ZNL6 1462 aa31.54■■■□□ 2.64
FOXN3-204ENST00000553840 RAD54L2Q9Y4B4 1467 aa31.52■■■□□ 2.64
FOXN3-204ENST00000553840 WDR97A6NE52 1622 aa31.45■■■□□ 2.62
FOXN3-204ENST00000553840 TDRD9Q8NDG6 1382 aaKnown RBP31.42■■■□□ 2.62
FOXN3-204ENST00000553840 TRIM41Q8WV44 630 aa31.41■■■□□ 2.62
FOXN3-204ENST00000553840 CHD1O14646 1710 aa31.38■■■□□ 2.61
FOXN3-204ENST00000553840 FBLN2P98095 1184 aa31.33■■■□□ 2.61
FOXN3-204ENST00000553840 GRIN2BQ13224 1484 aa31.25■■■□□ 2.59
FOXN3-204ENST00000553840 SNAPC4Q5SXM2 1469 aa31.25■■■□□ 2.59
FOXN3-204ENST00000553840 RIMBP3CA6NJZ7 1639 aa31.23■■■□□ 2.59
FOXN3-204ENST00000553840 RIMBP3BA6NNM3 1639 aa31.23■■■□□ 2.59
FOXN3-204ENST00000553840 RIMBP3Q9UFD9 1639 aa31.23■■■□□ 2.59
FOXN3-204ENST00000553840 MAGI1Q96QZ7 1491 aaPredicted RBP31.22■■■□□ 2.59
FOXN3-204ENST00000553840 ABCA10Q8WWZ4 1543 aa31.21■■■□□ 2.59
FOXN3-204ENST00000553840 WRNQ14191 1432 aaPredicted RBP eCLIP31.21■■■□□ 2.59
FOXN3-204ENST00000553840 BIVM-ERCC5R4GMW8 1640 aa31.2■■■□□ 2.59
FOXN3-204ENST00000553840 GAPVD1Q14C86 1478 aa31.2■■■□□ 2.58
FOXN3-204ENST00000553840 TOP2BQ02880 1626 aa31.2■■■□□ 2.58
FOXN3-204ENST00000553840 PBRM1Q86U86 1689 aa31.19■■■□□ 2.58
FOXN3-204ENST00000553840 CHMP7Q8WUX9 453 aaPredicted RBP31.17■■■□□ 2.58
FOXN3-204ENST00000553840 ARHGEF11O15085 1522 aa31.16■■■□□ 2.58
FOXN3-204ENST00000553840 SYNJ1O43426 1573 aa31.13■■■□□ 2.57
FOXN3-204ENST00000553840 ABCA5Q8WWZ7 1642 aa31.13■■■□□ 2.57
FOXN3-204ENST00000553840 SYNJ2O15056 1496 aa31.1■■■□□ 2.57
FOXN3-204ENST00000553840 CLASP1Q7Z460 1538 aa30.98■■■□□ 2.55
FOXN3-204ENST00000553840 CYB5RLQ6IPT4 315 aa30.93■■■□□ 2.54
FOXN3-204ENST00000553840 ADAMTS12P58397 1594 aa30.87■■■□□ 2.53
FOXN3-204ENST00000553840 ERICH3Q5RHP9 1530 aa30.86■■■□□ 2.53
FOXN3-204ENST00000553840 ARAP1Q96P48 1450 aa30.85■■■□□ 2.53
FOXN3-204ENST00000553840 GRIN2AQ12879 1464 aa30.83■■■□□ 2.53
FOXN3-204ENST00000553840 FHAD1B1AJZ9 1412 aa30.81■■■□□ 2.52
FOXN3-204ENST00000553840 NUP160Q12769 1436 aa30.69■■■□□ 2.5
FOXN3-204ENST00000553840 CEP170Q5SW79 1584 aa30.68■■■□□ 2.5
FOXN3-204ENST00000553840 KIF27Q86VH2 1401 aa30.62■■■□□ 2.49
FOXN3-204ENST00000553840 SHROOM2Q13796 1616 aa30.55■■■□□ 2.48
FOXN3-204ENST00000553840 CUL7Q14999 1698 aa30.52■■■□□ 2.48
FOXN3-204ENST00000553840 TRHP20396 242 aaPredicted RBP30.51■■■□□ 2.47
FOXN3-204ENST00000553840 IGF1RP08069 1367 aa30.5■■■□□ 2.47
FOXN3-204ENST00000553840 ERCC6L2Q5T890 1561 aa30.47■■■□□ 2.47
FOXN3-204ENST00000553840 RUSC2Q8N2Y8 1516 aa30.42■■■□□ 2.46
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms