RNA–Protein interactions for RNA: ENST00000631057.2

GPC3-204, Transcript of glypican 3, humanhuman

TSL 1 (best) BASIC

Gene GPC3, Length 1,581 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC3-204ENST00000631057 NISCHQ9Y2I1 1504 aa17■□□□□ 0.31
GPC3-204ENST00000631057 AEBP2Q6ZN18 517 aaPredicted RBP16.88■□□□□ 0.29
GPC3-204ENST00000631057 CHIC1Q5VXU3 224 aa16.08■□□□□ 0.16
GPC3-204ENST00000631057 CCDC180Q9P1Z9 1646 aa14.63□□□□□ -0.07
GPC3-204ENST00000631057 SENP3Q9H4L4 574 aaPredicted RBP14.62□□□□□ -0.07
GPC3-204ENST00000631057 ZCCHC6Q5VYS8 1495 aaKnown RBP14.38□□□□□ -0.11
GPC3-204ENST00000631057 PHF23Q9BUL5 403 aaPredicted RBP14.26□□□□□ -0.13
GPC3-204ENST00000631057 SHROOM4Q9ULL8 1493 aa14.24□□□□□ -0.13
GPC3-204ENST00000631057 DCAF1Q9Y4B6 1507 aa14.05□□□□□ -0.16
GPC3-204ENST00000631057 SUPT5HO00267 1087 aaKnown RBP13.93□□□□□ -0.18
GPC3-204ENST00000631057 DCAF8L2P0C7V8 631 aa13.88□□□□□ -0.19
GPC3-204ENST00000631057 POTEDQ86YR6 584 aa13.73□□□□□ -0.21
GPC3-204ENST00000631057 MYO15BQ96JP2 1530 aa13.69□□□□□ -0.22
GPC3-204ENST00000631057 ABCC9O60706 1549 aa13.66□□□□□ -0.22
GPC3-204ENST00000631057 FOXD1Q16676 465 aa13.61□□□□□ -0.23
GPC3-204ENST00000631057 PLPPR3Q6T4P5 718 aa13.55□□□□□ -0.24
GPC3-204ENST00000631057 SCRIBQ14160 1630 aa13.54□□□□□ -0.24
GPC3-204ENST00000631057 NACADO15069 1562 aa13.51□□□□□ -0.25
GPC3-204ENST00000631057 RB1CC1Q8TDY2 1594 aa13.39□□□□□ -0.27
GPC3-204ENST00000631057 EHMT2Q96KQ7 1210 aa13.37□□□□□ -0.27
GPC3-204ENST00000631057 RSF1Q96T23 1441 aaPredicted RBP13.37□□□□□ -0.27
GPC3-204ENST00000631057 CECR2Q9BXF3 1484 aa13.16□□□□□ -0.3
GPC3-204ENST00000631057 MROH2BQ7Z745 1585 aa13.16□□□□□ -0.3
GPC3-204ENST00000631057 WIZO95785 1651 aa13.11□□□□□ -0.31
GPC3-204ENST00000631057 BAZ1AQ9NRL2 1556 aaPredicted RBP13.1□□□□□ -0.31
GPC3-204ENST00000631057 UNC13AQ9UPW8 1703 aa13.09□□□□□ -0.31
GPC3-204ENST00000631057 MSH5O43196 834 aa13.09□□□□□ -0.31
GPC3-204ENST00000631057 LOC105371045A0A1W2PR82 267 aa13.08□□□□□ -0.32
GPC3-204ENST00000631057 HRCP23327 699 aa13.07□□□□□ -0.32
GPC3-204ENST00000631057 TRIM41Q8WV44 630 aa13.06□□□□□ -0.32
GPC3-204ENST00000631057 PCGF6Q9BYE7 350 aa13.03□□□□□ -0.32
GPC3-204ENST00000631057 SMARCA4P51532 1647 aa12.99□□□□□ -0.33
GPC3-204ENST00000631057 TOP2AP11388 1531 aaKnown RBP12.97□□□□□ -0.33
GPC3-204ENST00000631057 EIF4G1Q04637 1599 aaKnown RBP12.96□□□□□ -0.33
GPC3-204ENST00000631057 KCNA4P22459 653 aa12.94□□□□□ -0.34
GPC3-204ENST00000631057 BICRAQ9NZM4 1560 aa12.93□□□□□ -0.34
GPC3-204ENST00000631057 TRIM26Q12899 539 aaPredicted RBP12.9□□□□□ -0.34
GPC3-204ENST00000631057 PABPN1Q86U42 306 aaKnown RBP eCLIP12.88□□□□□ -0.352e-6■■□□□ 12
GPC3-204ENST00000631057 SMARCA2P51531 1590 aa12.86□□□□□ -0.35
GPC3-204ENST00000631057 FAM9AQ8IZU1 332 aaPredicted RBP12.84□□□□□ -0.35
GPC3-204ENST00000631057 CCDC88BA6NC98 1476 aa12.83□□□□□ -0.36
GPC3-204ENST00000631057 SLC24A1O60721 1099 aa12.81□□□□□ -0.36
GPC3-204ENST00000631057 PEG3Q9GZU2 1588 aa12.79□□□□□ -0.36
GPC3-204ENST00000631057 ABCC8Q09428 1581 aa12.75□□□□□ -0.37
GPC3-204ENST00000631057 CSRNP3Q8WYN3 585 aa12.72□□□□□ -0.37
GPC3-204ENST00000631057 ZEB1P37275 1124 aaPredicted RBP12.67□□□□□ -0.38
GPC3-204ENST00000631057 PPARGC1BQ86YN6 1023 aaKnown RBP12.67□□□□□ -0.38
GPC3-204ENST00000631057 EEA1Q15075 1411 aa12.67□□□□□ -0.38
GPC3-204ENST00000631057 ATAD2BQ9ULI0 1458 aa12.62□□□□□ -0.39
GPC3-204ENST00000631057 BAZ1BQ9UIG0 1483 aaKnown RBP12.6□□□□□ -0.39
GPC3-204ENST00000631057 ADRA2BP18089 450 aa12.6□□□□□ -0.39
GPC3-204ENST00000631057 PIAS4Q8N2W9 510 aaPredicted RBP12.59□□□□□ -0.39
GPC3-204ENST00000631057 SOGA1O94964 1423 aa12.58□□□□□ -0.4
GPC3-204ENST00000631057 WRNQ14191 1432 aaPredicted RBP eCLIP12.58□□□□□ -0.4
GPC3-204ENST00000631057 TNIKQ9UKE5 1360 aa12.57□□□□□ -0.4
GPC3-204ENST00000631057 CEP162Q5TB80 1403 aa12.55□□□□□ -0.4
GPC3-204ENST00000631057 SLC4A1APQ9BWU0 796 aaKnown RBP12.54□□□□□ -0.4
GPC3-204ENST00000631057 SYNJ1O43426 1573 aa12.53□□□□□ -0.4
GPC3-204ENST00000631057 GOLGA3Q08378 1498 aa12.53□□□□□ -0.4
GPC3-204ENST00000631057 KIF21BO75037 1637 aa12.51□□□□□ -0.41
GPC3-204ENST00000631057 RUSC2Q8N2Y8 1516 aa12.5□□□□□ -0.41
GPC3-204ENST00000631057 HMGXB3Q12766 1538 aa12.47□□□□□ -0.41
GPC3-204ENST00000631057 NCAPD3P42695 1498 aa12.47□□□□□ -0.41
GPC3-204ENST00000631057 CEP164Q9UPV0 1460 aa12.47□□□□□ -0.41
GPC3-204ENST00000631057 TOP2BQ02880 1626 aa12.44□□□□□ -0.42
GPC3-204ENST00000631057 UBTFP17480 764 aaKnown RBP12.44□□□□□ -0.42
GPC3-204ENST00000631057 BIVM-ERCC5R4GMW8 1640 aa12.44□□□□□ -0.42
GPC3-204ENST00000631057 CC2D2AQ9P2K1 1620 aa12.39□□□□□ -0.43
GPC3-204ENST00000631057 PRDM2Q13029 1718 aa12.37□□□□□ -0.43
GPC3-204ENST00000631057 CLIP1P30622 1438 aa12.34□□□□□ -0.43
GPC3-204ENST00000631057 CCER1Q8TC90 406 aaPredicted RBP12.33□□□□□ -0.44
GPC3-204ENST00000631057 ERICH3Q5RHP9 1530 aa12.32□□□□□ -0.44
GPC3-204ENST00000631057 RAPGEF2Q9Y4G8 1499 aa12.31□□□□□ -0.44
GPC3-204ENST00000631057 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.3□□□□□ -0.44
GPC3-204ENST00000631057 VPS8Q8N3P4 1428 aa12.3□□□□□ -0.44
GPC3-204ENST00000631057 AMER1Q5JTC6 1135 aaPredicted RBP12.3□□□□□ -0.44
GPC3-204ENST00000631057 CUX1P39880 1505 aa12.28□□□□□ -0.44
GPC3-204ENST00000631057 CFTRP13569 1480 aa12.28□□□□□ -0.44
GPC3-204ENST00000631057 RTN4Q9NQC3 1192 aaKnown RBP12.26□□□□□ -0.45
GPC3-204ENST00000631057 TTBK1Q5TCY1 1321 aaPredicted RBP12.26□□□□□ -0.45
GPC3-204ENST00000631057 PRXQ9BXM0 1461 aa12.25□□□□□ -0.45
GPC3-204ENST00000631057 KIF27Q86VH2 1401 aa12.22□□□□□ -0.45
GPC3-204ENST00000631057 PPP6R1Q9UPN7 881 aa12.22□□□□□ -0.45
GPC3-204ENST00000631057 APLP2Q06481 763 aa12.21□□□□□ -0.46
GPC3-204ENST00000631057 ARAP1Q96P48 1450 aa12.15□□□□□ -0.46
GPC3-204ENST00000631057 CADPSQ9ULU8 1353 aa12.14□□□□□ -0.47
GPC3-204ENST00000631057 DNAJC5BQ9UF47 199 aa12.13□□□□□ -0.47
GPC3-204ENST00000631057 RANGAP1P46060 587 aaPredicted RBP12.09□□□□□ -0.47
GPC3-204ENST00000631057 HNRNPUL2Q1KMD3 747 aaKnown RBP12.09□□□□□ -0.47
GPC3-204ENST00000631057 CUX2O14529 1486 aa12.08□□□□□ -0.47
GPC3-204ENST00000631057 NCBP3Q53F19 620 aaKnown RBP12.08□□□□□ -0.48
GPC3-204ENST00000631057 FGD5Q6ZNL6 1462 aa12.06□□□□□ -0.48
GPC3-204ENST00000631057 ARHGAP35Q9NRY4 1499 aa12.05□□□□□ -0.48
GPC3-204ENST00000631057 DIEXFQ68CQ4 756 aaKnown RBP12.05□□□□□ -0.48
GPC3-204ENST00000631057 PPP4R3CPQ6ZMV5 832 aa12.05□□□□□ -0.48
GPC3-204ENST00000631057 LAMC3Q9Y6N6 1575 aa12.04□□□□□ -0.48
GPC3-204ENST00000631057 IGF1RP08069 1367 aa12.04□□□□□ -0.48
GPC3-204ENST00000631057 DNMBPQ6XZF7 1577 aa12.03□□□□□ -0.48
GPC3-204ENST00000631057 FANCD2Q9BXW9 1451 aa12.03□□□□□ -0.48
GPC3-204ENST00000631057 RRBP1Q9P2E9 1410 aaKnown RBP12.01□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms