Protein–RNA interactions for Protein: Q96AX1

VPS33A, Vacuolar protein sorting-associated protein 33A, humanhuman

Predictions only

Length 596 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33AQ96AX1 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC24.05■■□□□ 1.44
VPS33AQ96AX1 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
VPS33AQ96AX1 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC24.05■■□□□ 1.44
VPS33AQ96AX1 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC24.05■■□□□ 1.44
VPS33AQ96AX1 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC24.04■■□□□ 1.44
VPS33AQ96AX1 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC24.04■■□□□ 1.44
VPS33AQ96AX1 AC018358.1-201ENST00000631079 1402 ntBASIC24.04■■□□□ 1.44
VPS33AQ96AX1 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
VPS33AQ96AX1 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC24.04■■□□□ 1.44
VPS33AQ96AX1 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
VPS33AQ96AX1 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC24.03■■□□□ 1.44
VPS33AQ96AX1 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC24.03■■□□□ 1.44
VPS33AQ96AX1 AC005559.1-201ENST00000589661 871 ntBASIC24.03■■□□□ 1.44
VPS33AQ96AX1 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC24.03■■□□□ 1.44
VPS33AQ96AX1 TAZ-205ENST00000475699 1862 ntTSL 1 (best) BASIC24.02■■□□□ 1.44
VPS33AQ96AX1 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC24.02■■□□□ 1.44
VPS33AQ96AX1 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
VPS33AQ96AX1 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
VPS33AQ96AX1 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC24.02■■□□□ 1.44
VPS33AQ96AX1 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC24.02■■□□□ 1.44
VPS33AQ96AX1 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC24.01■■□□□ 1.43
VPS33AQ96AX1 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC24.01■■□□□ 1.43
VPS33AQ96AX1 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC24.01■■□□□ 1.43
VPS33AQ96AX1 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC24.01■■□□□ 1.43
VPS33AQ96AX1 LMO1-202ENST00000428101 1038 ntAPPRIS ALT1 TSL 1 (best) BASIC24.01■■□□□ 1.43
VPS33AQ96AX1 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC24.01■■□□□ 1.43
VPS33AQ96AX1 PCSK6-216ENST00000615296 2921 ntTSL 5 BASIC24.01■■□□□ 1.43
VPS33AQ96AX1 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC24.01■■□□□ 1.43
VPS33AQ96AX1 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC24.01■■□□□ 1.43
VPS33AQ96AX1 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC24■■□□□ 1.43
VPS33AQ96AX1 GPR150-201ENST00000380007 2065 ntAPPRIS P1 BASIC24■■□□□ 1.43
VPS33AQ96AX1 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC24■■□□□ 1.43
VPS33AQ96AX1 SNTA1-201ENST00000217381 2342 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
VPS33AQ96AX1 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC23.99■■□□□ 1.43
VPS33AQ96AX1 ANKRD53-201ENST00000272421 2185 ntAPPRIS P3 TSL 1 (best) BASIC23.99■■□□□ 1.43
VPS33AQ96AX1 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC23.99■■□□□ 1.43
VPS33AQ96AX1 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
VPS33AQ96AX1 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
VPS33AQ96AX1 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
VPS33AQ96AX1 SUZ12P1-203ENST00000578195 985 ntBASIC23.99■■□□□ 1.43
VPS33AQ96AX1 AC091060.1-201ENST00000623524 1766 ntBASIC23.98■■□□□ 1.43
VPS33AQ96AX1 PTPA-202ENST00000347048 1989 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
VPS33AQ96AX1 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC23.98■■□□□ 1.43
VPS33AQ96AX1 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC23.98■■□□□ 1.43
VPS33AQ96AX1 FBXL8-206ENST00000519917 1460 ntAPPRIS P1 TSL 5 BASIC23.98■■□□□ 1.43
VPS33AQ96AX1 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC23.97■■□□□ 1.43
VPS33AQ96AX1 MIR6090-201ENST00000622481 60 ntBASIC23.97■■□□□ 1.43
VPS33AQ96AX1 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
VPS33AQ96AX1 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC23.96■■□□□ 1.43
VPS33AQ96AX1 HNRNPLP2-201ENST00000568980 1570 ntBASIC23.95■■□□□ 1.43
VPS33AQ96AX1 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
VPS33AQ96AX1 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC23.95■■□□□ 1.42
VPS33AQ96AX1 AC108673.1-201ENST00000510422 1159 ntBASIC23.95■■□□□ 1.42
VPS33AQ96AX1 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC23.95■■□□□ 1.42
VPS33AQ96AX1 FEZ1-201ENST00000278919 1748 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
VPS33AQ96AX1 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC23.94■■□□□ 1.42
VPS33AQ96AX1 IFFO2-203ENST00000455833 6188 ntAPPRIS P1 TSL 5 BASIC23.94■■□□□ 1.42
VPS33AQ96AX1 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
VPS33AQ96AX1 EI24-212ENST00000615917 1407 ntTSL 2 BASIC23.93■■□□□ 1.42
VPS33AQ96AX1 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
VPS33AQ96AX1 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC23.93■■□□□ 1.42
VPS33AQ96AX1 TIGD3-201ENST00000309880 2012 ntAPPRIS P1 TSL 2 BASIC23.93■■□□□ 1.42
VPS33AQ96AX1 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC23.93■■□□□ 1.42
VPS33AQ96AX1 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC23.93■■□□□ 1.42
VPS33AQ96AX1 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
VPS33AQ96AX1 VSIG8-201ENST00000368100 1818 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
VPS33AQ96AX1 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC23.92■■□□□ 1.42
VPS33AQ96AX1 LINC00273-201ENST00000539813 1452 ntBASIC23.92■■□□□ 1.42
VPS33AQ96AX1 SLC15A3-201ENST00000227880 2115 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
VPS33AQ96AX1 PDCD2-215ENST00000614056 1287 ntTSL 2 BASIC23.91■■□□□ 1.42
VPS33AQ96AX1 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
VPS33AQ96AX1 AL133346.1-201ENST00000435287 495 ntTSL 2 BASIC23.9■■□□□ 1.42
VPS33AQ96AX1 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
VPS33AQ96AX1 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
VPS33AQ96AX1 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
VPS33AQ96AX1 TMEM150A-202ENST00000334462 1518 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.42
VPS33AQ96AX1 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC23.89■■□□□ 1.42
VPS33AQ96AX1 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC23.89■■□□□ 1.42
VPS33AQ96AX1 ZNF470-206ENST00000601902 1640 ntTSL 1 (best) BASIC23.89■■□□□ 1.42
VPS33AQ96AX1 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.41
VPS33AQ96AX1 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC23.89■■□□□ 1.41
VPS33AQ96AX1 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC23.89■■□□□ 1.41
VPS33AQ96AX1 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC23.89■■□□□ 1.41
VPS33AQ96AX1 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC23.88■■□□□ 1.41
VPS33AQ96AX1 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
VPS33AQ96AX1 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
VPS33AQ96AX1 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC23.88■■□□□ 1.41
VPS33AQ96AX1 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC23.87■■□□□ 1.41
VPS33AQ96AX1 HOPX-206ENST00000503639 1248 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
VPS33AQ96AX1 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
VPS33AQ96AX1 MEN1-204ENST00000377313 1871 ntAPPRIS P3 TSL 2 BASIC23.87■■□□□ 1.41
VPS33AQ96AX1 DUX4L28-201ENST00000623687 678 ntBASIC23.86■■□□□ 1.41
VPS33AQ96AX1 EMID1-202ENST00000404755 2049 ntTSL 5 BASIC23.86■■□□□ 1.41
VPS33AQ96AX1 LYPD6B-203ENST00000409642 1577 ntAPPRIS P3 TSL 1 (best) BASIC23.86■■□□□ 1.41
VPS33AQ96AX1 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
VPS33AQ96AX1 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC23.85■■□□□ 1.41
VPS33AQ96AX1 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC23.85■■□□□ 1.41
VPS33AQ96AX1 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC23.84■■□□□ 1.41
VPS33AQ96AX1 PPP1R14C-201ENST00000361131 2152 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
VPS33AQ96AX1 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC23.84■■□□□ 1.41
Retrieved 100 of 98,524 protein–RNA pairs in 33.6 ms