Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC24.39■■□□□ 1.5
FOXA1P55317 OVOL2-201ENST00000278780 1555 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.5
FOXA1P55317 CALM3-209ENST00000597743 577 ntTSL 4 BASIC24.39■■□□□ 1.49
FOXA1P55317 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.49
FOXA1P55317 FBXL8-206ENST00000519917 1460 ntAPPRIS P1 TSL 5 BASIC24.38■■□□□ 1.49
FOXA1P55317 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC24.38■■□□□ 1.49
FOXA1P55317 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC24.38■■□□□ 1.49
FOXA1P55317 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
FOXA1P55317 SSBP3-202ENST00000357475 1533 ntTSL 1 (best) BASIC24.37■■□□□ 1.49
FOXA1P55317 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC24.37■■□□□ 1.49
FOXA1P55317 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC24.37■■□□□ 1.49
FOXA1P55317 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
FOXA1P55317 AL162393.1-201ENST00000437852 946 ntBASIC24.37■■□□□ 1.49
FOXA1P55317 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC24.37■■□□□ 1.49
FOXA1P55317 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC24.37■■□□□ 1.49
FOXA1P55317 RHOQ-201ENST00000238738 2975 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
FOXA1P55317 EIF5A-202ENST00000336458 1511 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
FOXA1P55317 CIB2-204ENST00000557846 934 ntTSL 3 BASIC24.36■■□□□ 1.49
FOXA1P55317 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC24.36■■□□□ 1.49
FOXA1P55317 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC24.36■■□□□ 1.49
FOXA1P55317 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
FOXA1P55317 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC24.35■■□□□ 1.49
FOXA1P55317 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC24.35■■□□□ 1.49
FOXA1P55317 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC24.35■■□□□ 1.49
FOXA1P55317 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC24.35■■□□□ 1.49
FOXA1P55317 TMEM185A-207ENST00000600449 2840 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
FOXA1P55317 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC24.34■■□□□ 1.49
FOXA1P55317 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC24.34■■□□□ 1.49
FOXA1P55317 BCL7C-202ENST00000380317 2409 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
FOXA1P55317 TLE6-201ENST00000246112 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC24.34■■□□□ 1.49
FOXA1P55317 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC24.34■■□□□ 1.49
FOXA1P55317 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC24.33■■□□□ 1.49
FOXA1P55317 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC24.33■■□□□ 1.49
FOXA1P55317 MXI1-201ENST00000239007 2424 ntAPPRIS ALT1 TSL 1 (best) BASIC24.33■■□□□ 1.48
FOXA1P55317 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
FOXA1P55317 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC24.32■■□□□ 1.48
FOXA1P55317 VSIG8-201ENST00000368100 1818 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
FOXA1P55317 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC24.31■■□□□ 1.48
FOXA1P55317 DNAJB2-202ENST00000392086 1946 ntAPPRIS P1 TSL 2 BASIC24.31■■□□□ 1.48
FOXA1P55317 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
FOXA1P55317 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC24.31■■□□□ 1.48
FOXA1P55317 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC24.31■■□□□ 1.48
FOXA1P55317 EMID1-202ENST00000404755 2049 ntTSL 5 BASIC24.3■■□□□ 1.48
FOXA1P55317 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC24.3■■□□□ 1.48
FOXA1P55317 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC24.3■■□□□ 1.48
FOXA1P55317 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC24.3■■□□□ 1.48
FOXA1P55317 TIGD3-201ENST00000309880 2012 ntAPPRIS P1 TSL 2 BASIC24.3■■□□□ 1.48
FOXA1P55317 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC24.29■■□□□ 1.48
FOXA1P55317 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
FOXA1P55317 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
FOXA1P55317 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC24.29■■□□□ 1.48
FOXA1P55317 LZTS2-201ENST00000370220 5741 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
FOXA1P55317 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC24.28■■□□□ 1.48
FOXA1P55317 MEN1-204ENST00000377313 1871 ntAPPRIS P3 TSL 2 BASIC24.28■■□□□ 1.48
FOXA1P55317 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC24.28■■□□□ 1.48
FOXA1P55317 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC24.28■■□□□ 1.48
FOXA1P55317 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
FOXA1P55317 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC24.27■■□□□ 1.48
FOXA1P55317 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC24.27■■□□□ 1.48
FOXA1P55317 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
FOXA1P55317 AL449106.1-201ENST00000608517 1980 ntBASIC24.26■■□□□ 1.47
FOXA1P55317 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC24.26■■□□□ 1.47
FOXA1P55317 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
FOXA1P55317 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC24.25■■□□□ 1.47
FOXA1P55317 LYPD6B-203ENST00000409642 1577 ntAPPRIS P3 TSL 1 (best) BASIC24.25■■□□□ 1.47
FOXA1P55317 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC24.25■■□□□ 1.47
FOXA1P55317 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC24.25■■□□□ 1.47
FOXA1P55317 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
FOXA1P55317 AC044849.2-201ENST00000606596 710 ntBASIC24.24■■□□□ 1.47
FOXA1P55317 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC24.23■■□□□ 1.47
FOXA1P55317 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC24.23■■□□□ 1.47
FOXA1P55317 CAPNS1-217ENST00000629983 799 ntTSL 5 BASIC24.23■■□□□ 1.47
FOXA1P55317 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC24.23■■□□□ 1.47
FOXA1P55317 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC24.23■■□□□ 1.47
FOXA1P55317 PKDCC-201ENST00000294964 2502 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
FOXA1P55317 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
FOXA1P55317 AC091060.1-201ENST00000623524 1766 ntBASIC24.22■■□□□ 1.47
FOXA1P55317 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC24.22■■□□□ 1.47
FOXA1P55317 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC24.22■■□□□ 1.47
FOXA1P55317 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC24.21■■□□□ 1.47
FOXA1P55317 BCAP31-201ENST00000345046 1589 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
FOXA1P55317 AC110285.7-201ENST00000624417 1536 ntBASIC24.21■■□□□ 1.47
FOXA1P55317 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC24.21■■□□□ 1.47
FOXA1P55317 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC24.2■■□□□ 1.47
FOXA1P55317 NTN3-201ENST00000293973 1986 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.46
FOXA1P55317 PEX7-203ENST00000541292 945 ntTSL 5 BASIC24.2■■□□□ 1.46
FOXA1P55317 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC24.2■■□□□ 1.46
FOXA1P55317 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.46
FOXA1P55317 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC24.19■■□□□ 1.46
FOXA1P55317 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC24.18■■□□□ 1.46
FOXA1P55317 DCUN1D5-201ENST00000260247 1337 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
FOXA1P55317 AC021231.2-201ENST00000594613 730 ntBASIC24.18■■□□□ 1.46
FOXA1P55317 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC24.18■■□□□ 1.46
FOXA1P55317 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC24.17■■□□□ 1.46
FOXA1P55317 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
FOXA1P55317 BOD1-206ENST00000480951 814 ntTSL 2 BASIC24.17■■□□□ 1.46
FOXA1P55317 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC24.17■■□□□ 1.46
FOXA1P55317 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC24.17■■□□□ 1.46
FOXA1P55317 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC24.17■■□□□ 1.46
FOXA1P55317 C14orf80-203ENST00000354560 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC24.16■■□□□ 1.46
Retrieved 100 of 98,524 protein–RNA pairs in 27 ms