Protein–RNA interactions for Protein: P53804

TTC3, E3 ubiquitin-protein ligase TTC3, humanhuman

Predictions only

Length 2,025 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC3P53804 TPRG1L-202ENST00000378344 2414 ntAPPRIS P1 TSL 2 BASIC27.49■■□□□ 1.99
TTC3P53804 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC27.49■■□□□ 1.99
TTC3P53804 ST7-AS1-201ENST00000456775 1889 ntBASIC27.47■■□□□ 1.99
TTC3P53804 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC27.47■■□□□ 1.99
TTC3P53804 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC27.46■■□□□ 1.99
TTC3P53804 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC27.46■■□□□ 1.99
TTC3P53804 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC27.46■■□□□ 1.99
TTC3P53804 HOMER3-207ENST00000594794 903 ntTSL 5 BASIC27.46■■□□□ 1.99
TTC3P53804 OPRD1-202ENST00000621425 1217 ntTSL 1 (best) BASIC27.46■■□□□ 1.99
TTC3P53804 SLC9A3-AS1-207ENST00000607286 1357 ntTSL 5 BASIC27.46■■□□□ 1.99
TTC3P53804 SEPT3-203ENST00000396426 2586 ntAPPRIS P4 TSL 1 (best) BASIC27.46■■□□□ 1.99
TTC3P53804 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC27.46■■□□□ 1.99
TTC3P53804 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC27.46■■□□□ 1.99
TTC3P53804 ARL8A-201ENST00000272217 1793 ntAPPRIS P1 TSL 1 (best) BASIC27.46■■□□□ 1.99
TTC3P53804 CBX4-201ENST00000269397 2664 ntAPPRIS P2 TSL 1 (best) BASIC27.46■■□□□ 1.99
TTC3P53804 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC27.46■■□□□ 1.99
TTC3P53804 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC27.46■■□□□ 1.99
TTC3P53804 DHRS13-203ENST00000426464 1569 ntTSL 2 BASIC27.46■■□□□ 1.99
TTC3P53804 TAZ-215ENST00000612460 1793 ntAPPRIS P1 TSL 1 (best) BASIC27.45■■□□□ 1.99
TTC3P53804 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC27.45■■□□□ 1.99
TTC3P53804 AC004987.1-201ENST00000428627 508 ntBASIC27.45■■□□□ 1.98
TTC3P53804 PHF23-201ENST00000320316 2037 ntAPPRIS P1 TSL 1 (best) BASIC27.45■■□□□ 1.98
TTC3P53804 FTCD-204ENST00000397748 1955 ntTSL 1 (best) BASIC27.44■■□□□ 1.98
TTC3P53804 RAMP2-AS1-202ENST00000589716 1985 ntTSL 5 BASIC27.44■■□□□ 1.98
TTC3P53804 AC126177.7-201ENST00000547904 679 ntBASIC27.43■■□□□ 1.98
TTC3P53804 TNFRSF25-204ENST00000356876 1625 ntAPPRIS ALT2 TSL 1 (best) BASIC27.43■■□□□ 1.98
TTC3P53804 LDLRAD4-218ENST00000592991 1640 ntTSL 1 (best) BASIC27.43■■□□□ 1.98
TTC3P53804 KCNG2-201ENST00000316249 1401 ntAPPRIS P1 TSL 1 (best) BASIC27.43■■□□□ 1.98
TTC3P53804 AGAP3-211ENST00000473312 2039 ntTSL 1 (best) BASIC27.42■■□□□ 1.98
TTC3P53804 C19orf12-207ENST00000592153 1504 ntTSL 1 (best) BASIC27.42■■□□□ 1.98
TTC3P53804 AC010907.1-201ENST00000441632 807 ntTSL 3 BASIC27.42■■□□□ 1.98
TTC3P53804 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC27.42■■□□□ 1.98
TTC3P53804 AP004833.2-201ENST00000532228 1454 ntBASIC27.42■■□□□ 1.98
TTC3P53804 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC27.42■■□□□ 1.98
TTC3P53804 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC27.41■■□□□ 1.98
TTC3P53804 BCAP31-201ENST00000345046 1589 ntAPPRIS P1 TSL 1 (best) BASIC27.41■■□□□ 1.98
TTC3P53804 TXNRD2-204ENST00000400521 2115 ntAPPRIS P2 TSL 1 (best) BASIC27.41■■□□□ 1.98
TTC3P53804 LYPD6B-204ENST00000409876 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC27.41■■□□□ 1.98
TTC3P53804 ATP5G2P3-201ENST00000429083 425 ntBASIC27.41■■□□□ 1.98
TTC3P53804 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC27.4■■□□□ 1.98
TTC3P53804 AC100797.4-201ENST00000631653 1827 ntBASIC27.4■■□□□ 1.98
TTC3P53804 PPP1R14A-201ENST00000301242 777 ntAPPRIS P1 TSL 1 (best) BASIC27.4■■□□□ 1.98
TTC3P53804 WDR86-204ENST00000477459 1428 ntTSL 2 BASIC27.39■■□□□ 1.98
TTC3P53804 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC27.39■■□□□ 1.98
TTC3P53804 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC27.39■■□□□ 1.98
TTC3P53804 SLC25A23-203ENST00000334510 1424 ntTSL 1 (best) BASIC27.38■■□□□ 1.97
TTC3P53804 SNX15-202ENST00000377244 1939 ntAPPRIS P1 TSL 1 (best) BASIC27.38■■□□□ 1.97
TTC3P53804 REST-210ENST00000638187 1334 ntTSL 5 BASIC27.37■■□□□ 1.97
TTC3P53804 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC27.37■■□□□ 1.97
TTC3P53804 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC27.37■■□□□ 1.97
TTC3P53804 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC27.36■■□□□ 1.97
TTC3P53804 ST7-208ENST00000393451 2110 ntAPPRIS P1 TSL 1 (best) BASIC27.36■■□□□ 1.97
TTC3P53804 EMC10-206ENST00000598585 1610 ntAPPRIS ALT2 TSL 5 BASIC27.36■■□□□ 1.97
TTC3P53804 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC27.36■■□□□ 1.97
TTC3P53804 PSMG4-207ENST00000451246 824 ntTSL 3 BASIC27.36■■□□□ 1.97
TTC3P53804 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC27.36■■□□□ 1.97
TTC3P53804 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC27.36■■□□□ 1.97
TTC3P53804 AC007029.1-201ENST00000604183 313 ntBASIC27.36■■□□□ 1.97
TTC3P53804 ZNF513-201ENST00000323703 2139 ntAPPRIS P1 TSL 1 (best) BASIC27.35■■□□□ 1.97
TTC3P53804 GUK1-208ENST00000366728 842 ntTSL 2 BASIC27.35■■□□□ 1.97
TTC3P53804 TPM2-203ENST00000378292 2147 ntAPPRIS ALT1 TSL 1 (best) BASIC27.35■■□□□ 1.97
TTC3P53804 MRPL4-201ENST00000253099 1455 ntAPPRIS P2 TSL 1 (best) BASIC27.35■■□□□ 1.97
TTC3P53804 MPP6-203ENST00000409761 1703 ntTSL 5 BASIC27.35■■□□□ 1.97
TTC3P53804 VIPR2-204ENST00000421760 717 ntTSL 3 BASIC27.34■■□□□ 1.97
TTC3P53804 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC27.34■■□□□ 1.97
TTC3P53804 ILDR2-208ENST00000529387 1238 ntTSL 5 BASIC27.34■■□□□ 1.97
TTC3P53804 UBE2I-213ENST00000566587 1098 ntAPPRIS P1 TSL 2 BASIC27.34■■□□□ 1.97
TTC3P53804 KLF16-204ENST00000617223 1133 ntAPPRIS P1 TSL 1 (best) BASIC27.34■■□□□ 1.97
TTC3P53804 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC27.34■■□□□ 1.97
TTC3P53804 COPRS-201ENST00000302362 968 ntAPPRIS P1 TSL 1 (best) BASIC27.33■■□□□ 1.97
TTC3P53804 GPR25-201ENST00000304244 1224 ntAPPRIS P1 BASIC27.33■■□□□ 1.97
TTC3P53804 AC025884.2-201ENST00000553429 711 ntBASIC27.33■■□□□ 1.97
TTC3P53804 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC27.33■■□□□ 1.97
TTC3P53804 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC27.33■■□□□ 1.96
TTC3P53804 AC129492.7-201ENST00000622992 756 ntBASIC27.33■■□□□ 1.96
TTC3P53804 FHL2-202ENST00000344213 1769 ntTSL 1 (best) BASIC27.32■■□□□ 1.96
TTC3P53804 IFI30-201ENST00000407280 1134 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.96
TTC3P53804 FBRSL1-201ENST00000434748 5568 ntAPPRIS P2 TSL 1 (best) BASIC27.32■■□□□ 1.96
TTC3P53804 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.96
TTC3P53804 FKBP1A-205ENST00000439640 1583 ntTSL 3 BASIC27.31■■□□□ 1.96
TTC3P53804 RARRES2P1-201ENST00000474487 481 ntBASIC27.31■■□□□ 1.96
TTC3P53804 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC27.31■■□□□ 1.96
TTC3P53804 TSPAN33-201ENST00000486685 1863 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
TTC3P53804 TNFRSF12A-201ENST00000326577 1033 ntAPPRIS P1 TSL 1 (best) BASIC27.3■■□□□ 1.96
TTC3P53804 PHF20L1-207ENST00000395379 1998 ntTSL 5 BASIC27.3■■□□□ 1.96
TTC3P53804 YAP1-204ENST00000526343 2393 ntTSL 5 BASIC27.3■■□□□ 1.96
TTC3P53804 WBP1-201ENST00000233615 1294 ntAPPRIS P2 TSL 1 (best) BASIC27.29■■□□□ 1.96
TTC3P53804 SEC11C-204ENST00000587834 1202 ntAPPRIS P1 TSL 1 (best) BASIC27.29■■□□□ 1.96
TTC3P53804 CLEC11A-201ENST00000250340 1419 ntAPPRIS P1 TSL 1 (best) BASIC27.29■■□□□ 1.96
TTC3P53804 AL592293.1-201ENST00000502889 1188 ntBASIC27.29■■□□□ 1.96
TTC3P53804 ARPC2-202ENST00000315717 1505 ntAPPRIS P1 TSL 1 (best) BASIC27.28■■□□□ 1.96
TTC3P53804 RSPO4-202ENST00000400634 722 ntTSL 1 (best) BASIC27.28■■□□□ 1.96
TTC3P53804 DNPEP-201ENST00000273075 2425 ntAPPRIS P3 TSL 1 (best) BASIC27.28■■□□□ 1.96
TTC3P53804 AC133552.2-201ENST00000619106 1032 ntBASIC27.28■■□□□ 1.96
TTC3P53804 SOWAHD-201ENST00000343905 1552 ntAPPRIS P1 BASIC27.27■■□□□ 1.96
TTC3P53804 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC27.27■■□□□ 1.96
TTC3P53804 AC009831.1-201ENST00000580420 1582 ntBASIC27.27■■□□□ 1.96
TTC3P53804 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC27.26■■□□□ 1.96
TTC3P53804 ACOT7-201ENST00000361521 2429 ntAPPRIS ALT2 TSL 1 (best) BASIC27.26■■□□□ 1.96
TTC3P53804 ST7-205ENST00000393446 2114 ntTSL 5 BASIC27.26■■□□□ 1.96
Retrieved 100 of 98,524 protein–RNA pairs in 95.8 ms