Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 PYY2-202ENST00000441253 1076 ntTSL 1 (best) BASIC32.53■■■□□ 2.8
COL5A3P25940 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC32.53■■■□□ 2.8
COL5A3P25940 CIB2-201ENST00000258930 1598 ntAPPRIS P1 TSL 1 (best) BASIC32.53■■■□□ 2.8
COL5A3P25940 KCNG2-201ENST00000316249 1401 ntAPPRIS P1 TSL 1 (best) BASIC32.52■■■□□ 2.8
COL5A3P25940 AC129492.7-201ENST00000622992 756 ntBASIC32.52■■■□□ 2.8
COL5A3P25940 IFI30-201ENST00000407280 1134 ntAPPRIS P1 TSL 1 (best) BASIC32.51■■■□□ 2.8
COL5A3P25940 AL592293.1-201ENST00000502889 1188 ntBASIC32.51■■■□□ 2.8
COL5A3P25940 AC064853.2-201ENST00000641246 144 ntAPPRIS P1 BASIC32.51■■■□□ 2.8
COL5A3P25940 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC32.51■■■□□ 2.79
COL5A3P25940 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC32.51■■■□□ 2.79
COL5A3P25940 EMX1-201ENST00000258106 2188 ntAPPRIS P1 TSL 1 (best) BASIC32.5■■■□□ 2.79
COL5A3P25940 AC010907.1-201ENST00000441632 807 ntTSL 3 BASIC32.5■■■□□ 2.79
COL5A3P25940 PTPA-210ENST00000414510 1153 ntTSL 1 (best) BASIC32.49■■■□□ 2.79
COL5A3P25940 CLEC11A-201ENST00000250340 1419 ntAPPRIS P1 TSL 1 (best) BASIC32.49■■■□□ 2.79
COL5A3P25940 WDR86-204ENST00000477459 1428 ntTSL 2 BASIC32.49■■■□□ 2.79
COL5A3P25940 KCNK3-202ENST00000620977 1956 ntTSL 1 (best) BASIC32.49■■■□□ 2.79
COL5A3P25940 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC32.48■■■□□ 2.79
COL5A3P25940 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC32.48■■■□□ 2.79
COL5A3P25940 AC009831.1-201ENST00000580420 1582 ntBASIC32.47■■■□□ 2.79
COL5A3P25940 WBP1-201ENST00000233615 1294 ntAPPRIS P2 TSL 1 (best) BASIC32.47■■■□□ 2.79
COL5A3P25940 GXYLT1-201ENST00000280876 1937 ntAPPRIS ALT2 TSL 1 (best) BASIC32.46■■■□□ 2.79
COL5A3P25940 TNFRSF12A-201ENST00000326577 1033 ntAPPRIS P1 TSL 1 (best) BASIC32.46■■■□□ 2.79
COL5A3P25940 VIPR2-204ENST00000421760 717 ntTSL 3 BASIC32.46■■■□□ 2.79
COL5A3P25940 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC32.46■■■□□ 2.79
COL5A3P25940 GLT8D1-201ENST00000266014 1849 ntAPPRIS P1 TSL 1 (best) BASIC32.45■■■□□ 2.79
COL5A3P25940 GAL3ST1-205ENST00000406361 1819 ntAPPRIS P1 TSL 2 BASIC32.45■■■□□ 2.79
COL5A3P25940 CERS1-201ENST00000429504 2094 ntTSL 1 (best) BASIC32.45■■■□□ 2.79
COL5A3P25940 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC32.45■■■□□ 2.79
COL5A3P25940 BCAP31-201ENST00000345046 1589 ntAPPRIS P1 TSL 1 (best) BASIC32.45■■■□□ 2.78
COL5A3P25940 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC32.44■■■□□ 2.78
COL5A3P25940 WSB2-211ENST00000544233 2503 ntTSL 2 BASIC32.44■■■□□ 2.78
COL5A3P25940 SLC52A2-201ENST00000329994 1896 ntAPPRIS P1 TSL 1 (best) BASIC32.44■■■□□ 2.78
COL5A3P25940 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC32.44■■■□□ 2.78
COL5A3P25940 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC32.44■■■□□ 2.78
COL5A3P25940 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC32.44■■■□□ 2.78
COL5A3P25940 REST-210ENST00000638187 1334 ntTSL 5 BASIC32.44■■■□□ 2.78
COL5A3P25940 RPUSD1-208ENST00000567114 1835 ntTSL 2 BASIC32.44■■■□□ 2.78
COL5A3P25940 MAFA-201ENST00000333480 2347 ntAPPRIS P1 BASIC32.44■■■□□ 2.78
COL5A3P25940 C17orf49-201ENST00000439424 850 ntAPPRIS P3 TSL 1 (best) BASIC32.43■■■□□ 2.78
COL5A3P25940 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC32.43■■■□□ 2.78
COL5A3P25940 AC025884.2-201ENST00000553429 711 ntBASIC32.43■■■□□ 2.78
COL5A3P25940 PSMG3-202ENST00000288607 1391 ntAPPRIS P1 TSL 1 (best) BASIC32.43■■■□□ 2.78
COL5A3P25940 ZBTB7A-202ENST00000601588 2083 ntAPPRIS P1 TSL 1 (best) BASIC32.43■■■□□ 2.78
COL5A3P25940 AL451085.2-201ENST00000605085 799 ntBASIC32.43■■■□□ 2.78
COL5A3P25940 WBP1-202ENST00000393972 1325 ntTSL 2 BASIC32.42■■■□□ 2.78
COL5A3P25940 RSPO4-202ENST00000400634 722 ntTSL 1 (best) BASIC32.42■■■□□ 2.78
COL5A3P25940 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC32.42■■■□□ 2.78
COL5A3P25940 SLC25A23-203ENST00000334510 1424 ntTSL 1 (best) BASIC32.41■■■□□ 2.78
COL5A3P25940 ERFE-207ENST00000546354 1065 ntAPPRIS P2 TSL 1 (best) BASIC32.4■■■□□ 2.78
COL5A3P25940 EMC10-206ENST00000598585 1610 ntAPPRIS ALT2 TSL 5 BASIC32.4■■■□□ 2.78
COL5A3P25940 LDLRAD4-218ENST00000592991 1640 ntTSL 1 (best) BASIC32.39■■■□□ 2.78
COL5A3P25940 OXLD1-201ENST00000374741 620 ntAPPRIS P1 TSL 1 (best) BASIC32.39■■■□□ 2.78
COL5A3P25940 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC32.39■■■□□ 2.78
COL5A3P25940 HES4-204ENST00000484667 667 ntTSL 3 BASIC32.39■■■□□ 2.78
COL5A3P25940 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC32.38■■■□□ 2.77
COL5A3P25940 SSTR5-201ENST00000293897 1362 ntAPPRIS P1 BASIC32.38■■■□□ 2.77
COL5A3P25940 PROSER2-202ENST00000379200 1232 ntAPPRIS ALT2 BASIC32.37■■■□□ 2.77
COL5A3P25940 SOWAHD-201ENST00000343905 1552 ntAPPRIS P1 BASIC32.37■■■□□ 2.77
COL5A3P25940 ANGPTL6-201ENST00000253109 1900 ntAPPRIS P1 TSL 1 (best) BASIC32.37■■■□□ 2.77
COL5A3P25940 AMZ2-201ENST00000359783 1722 ntTSL 5 BASIC32.36■■■□□ 2.77
COL5A3P25940 LDB1-202ENST00000425280 2089 ntTSL 5 BASIC32.36■■■□□ 2.77
COL5A3P25940 UBE2D2-205ENST00000505548 1113 ntTSL 1 (best) BASIC32.36■■■□□ 2.77
COL5A3P25940 FAM222B-205ENST00000577682 549 ntTSL 4 BASIC32.36■■■□□ 2.77
COL5A3P25940 EIF5A-211ENST00000576930 1439 ntAPPRIS P1 TSL 5 BASIC32.36■■■□□ 2.77
COL5A3P25940 MRPL4-201ENST00000253099 1455 ntAPPRIS P2 TSL 1 (best) BASIC32.35■■■□□ 2.77
COL5A3P25940 AC133552.2-201ENST00000619106 1032 ntBASIC32.34■■■□□ 2.77
COL5A3P25940 ATXN3-252ENST00000620536 1044 ntTSL 5 BASIC32.34■■■□□ 2.77
COL5A3P25940 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC32.34■■■□□ 2.77
COL5A3P25940 SNX15-202ENST00000377244 1939 ntAPPRIS P1 TSL 1 (best) BASIC32.34■■■□□ 2.77
COL5A3P25940 HSPB6-202ENST00000587965 711 ntTSL 2 BASIC32.33■■■□□ 2.77
COL5A3P25940 ARPC2-202ENST00000315717 1505 ntAPPRIS P1 TSL 1 (best) BASIC32.33■■■□□ 2.77
COL5A3P25940 FOXD3-201ENST00000371116 2086 ntAPPRIS P1 BASIC32.32■■■□□ 2.76
COL5A3P25940 KRTAP5-5-201ENST00000399676 933 ntAPPRIS P1 BASIC32.32■■■□□ 2.76
COL5A3P25940 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC32.32■■■□□ 2.76
COL5A3P25940 TBX2-AS1-203ENST00000590421 861 ntTSL 2 BASIC32.32■■■□□ 2.76
COL5A3P25940 ABHD17B-202ENST00000377041 1312 ntAPPRIS P4 TSL 1 (best) BASIC32.32■■■□□ 2.76
COL5A3P25940 RASSF8-202ENST00000381352 2320 ntTSL 1 (best) BASIC32.32■■■□□ 2.76
COL5A3P25940 UBE2E3-213ENST00000602959 909 ntAPPRIS P1 TSL 5 BASIC32.31■■■□□ 2.76
COL5A3P25940 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC32.31■■■□□ 2.76
COL5A3P25940 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC32.3■■■□□ 2.76
COL5A3P25940 AP004833.2-201ENST00000532228 1454 ntBASIC32.3■■■□□ 2.76
COL5A3P25940 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC32.3■■■□□ 2.76
COL5A3P25940 TNFRSF25-204ENST00000356876 1625 ntAPPRIS ALT2 TSL 1 (best) BASIC32.3■■■□□ 2.76
COL5A3P25940 DUX4L9-201ENST00000449051 1259 ntBASIC32.3■■■□□ 2.76
COL5A3P25940 AC100797.4-201ENST00000631653 1827 ntBASIC32.3■■■□□ 2.76
COL5A3P25940 DEXI-202ENST00000469379 1393 ntAPPRIS P1 TSL 2 BASIC32.29■■■□□ 2.76
COL5A3P25940 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC32.29■■■□□ 2.76
COL5A3P25940 CIB2-202ENST00000539011 1511 ntTSL 1 (best) BASIC32.29■■■□□ 2.76
COL5A3P25940 CAPNS1-204ENST00000587718 1558 ntAPPRIS ALT2 TSL 1 (best) BASIC32.29■■■□□ 2.76
COL5A3P25940 GPR25-201ENST00000304244 1224 ntAPPRIS P1 BASIC32.29■■■□□ 2.76
COL5A3P25940 TMEM158-201ENST00000503771 1813 ntAPPRIS P1 BASIC32.28■■■□□ 2.76
COL5A3P25940 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC32.28■■■□□ 2.76
COL5A3P25940 SDF2L1-201ENST00000248958 865 ntAPPRIS P1 TSL 1 (best) BASIC32.27■■■□□ 2.76
COL5A3P25940 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC32.27■■■□□ 2.76
COL5A3P25940 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC32.26■■■□□ 2.75
COL5A3P25940 FKBP1A-205ENST00000439640 1583 ntTSL 3 BASIC32.26■■■□□ 2.75
COL5A3P25940 LY6H-201ENST00000342752 951 ntAPPRIS ALT2 TSL 1 (best) BASIC32.26■■■□□ 2.75
COL5A3P25940 MAPK3-203ENST00000395199 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC32.26■■■□□ 2.75
COL5A3P25940 LY6H-202ENST00000414417 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC32.26■■■□□ 2.75
COL5A3P25940 LY6H-203ENST00000430474 925 ntAPPRIS P3 TSL 3 BASIC32.26■■■□□ 2.75
Retrieved 100 of 98,524 protein–RNA pairs in 86.7 ms