Protein–RNA interactions for Protein: O15116

LSM1, U6 snRNA-associated Sm-like protein LSm1, humanhuman

Known RBP Predictions only

Length 133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1O15116 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
LSM1O15116 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
LSM1O15116 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC24.21■■□□□ 1.47
LSM1O15116 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
LSM1O15116 CACNG6-202ENST00000346968 645 ntTSL 5 BASIC24.2■■□□□ 1.46
LSM1O15116 NRG1-221ENST00000614767 762 ntTSL 5 BASIC24.2■■□□□ 1.46
LSM1O15116 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC24.2■■□□□ 1.46
LSM1O15116 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC24.2■■□□□ 1.46
LSM1O15116 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC24.2■■□□□ 1.46
LSM1O15116 CPNE1-202ENST00000352393 2147 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
LSM1O15116 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC24.19■■□□□ 1.46
LSM1O15116 AC087741.3-201ENST00000624270 1347 ntBASIC24.19■■□□□ 1.46
LSM1O15116 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC24.19■■□□□ 1.46
LSM1O15116 CALM3-209ENST00000597743 577 ntTSL 4 BASIC24.19■■□□□ 1.46
LSM1O15116 EIF5A-202ENST00000336458 1511 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
LSM1O15116 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC24.18■■□□□ 1.46
LSM1O15116 SHF-207ENST00000560540 2062 ntTSL 5 BASIC24.18■■□□□ 1.46
LSM1O15116 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC24.17■■□□□ 1.46
LSM1O15116 OVOL2-201ENST00000278780 1555 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
LSM1O15116 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC24.17■■□□□ 1.46
LSM1O15116 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC24.17■■□□□ 1.46
LSM1O15116 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC24.17■■□□□ 1.46
LSM1O15116 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC24.16■■□□□ 1.46
LSM1O15116 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC24.16■■□□□ 1.46
LSM1O15116 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC24.16■■□□□ 1.46
LSM1O15116 AKAP17A-202ENST00000381261 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC24.15■■□□□ 1.46
LSM1O15116 CIB2-204ENST00000557846 934 ntTSL 3 BASIC24.15■■□□□ 1.46
LSM1O15116 PAPD7-201ENST00000230859 5459 ntTSL 1 (best) BASIC24.15■■□□□ 1.46
LSM1O15116 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC24.14■■□□□ 1.46
LSM1O15116 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC24.14■■□□□ 1.46
LSM1O15116 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC24.14■■□□□ 1.46
LSM1O15116 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.46
LSM1O15116 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC24.14■■□□□ 1.45
LSM1O15116 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC24.13■■□□□ 1.45
LSM1O15116 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC24.13■■□□□ 1.45
LSM1O15116 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
LSM1O15116 AL162393.1-201ENST00000437852 946 ntBASIC24.13■■□□□ 1.45
LSM1O15116 SSBP3-202ENST00000357475 1533 ntTSL 1 (best) BASIC24.13■■□□□ 1.45
LSM1O15116 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC24.13■■□□□ 1.45
LSM1O15116 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC24.12■■□□□ 1.45
LSM1O15116 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC24.12■■□□□ 1.45
LSM1O15116 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC24.12■■□□□ 1.45
LSM1O15116 DNAJB2-202ENST00000392086 1946 ntAPPRIS P1 TSL 2 BASIC24.12■■□□□ 1.45
LSM1O15116 LYPD6B-203ENST00000409642 1577 ntAPPRIS P3 TSL 1 (best) BASIC24.12■■□□□ 1.45
LSM1O15116 FGF19-201ENST00000294312 2447 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
LSM1O15116 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
LSM1O15116 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC24.11■■□□□ 1.45
LSM1O15116 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
LSM1O15116 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
LSM1O15116 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
LSM1O15116 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC24.1■■□□□ 1.45
LSM1O15116 PLBD2-202ENST00000545182 2321 ntTSL 2 BASIC24.1■■□□□ 1.45
LSM1O15116 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
LSM1O15116 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC24.1■■□□□ 1.45
LSM1O15116 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC24.1■■□□□ 1.45
LSM1O15116 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC24.1■■□□□ 1.45
LSM1O15116 BCAP31-201ENST00000345046 1589 ntAPPRIS P1 TSL 1 (best) BASIC24.08■■□□□ 1.45
LSM1O15116 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC24.08■■□□□ 1.45
LSM1O15116 TLE6-201ENST00000246112 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC24.08■■□□□ 1.45
LSM1O15116 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC24.08■■□□□ 1.44
LSM1O15116 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC24.07■■□□□ 1.44
LSM1O15116 TIGD3-201ENST00000309880 2012 ntAPPRIS P1 TSL 2 BASIC24.07■■□□□ 1.44
LSM1O15116 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
LSM1O15116 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC24.07■■□□□ 1.44
LSM1O15116 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC24.07■■□□□ 1.44
LSM1O15116 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC24.07■■□□□ 1.44
LSM1O15116 VSIG8-201ENST00000368100 1818 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
LSM1O15116 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC24.07■■□□□ 1.44
LSM1O15116 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC24.07■■□□□ 1.44
LSM1O15116 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC24.06■■□□□ 1.44
LSM1O15116 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
LSM1O15116 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC24.06■■□□□ 1.44
LSM1O15116 AC044849.2-201ENST00000606596 710 ntBASIC24.06■■□□□ 1.44
LSM1O15116 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC24.06■■□□□ 1.44
LSM1O15116 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC24.06■■□□□ 1.44
LSM1O15116 MEN1-204ENST00000377313 1871 ntAPPRIS P3 TSL 2 BASIC24.06■■□□□ 1.44
LSM1O15116 EMID1-202ENST00000404755 2049 ntTSL 5 BASIC24.06■■□□□ 1.44
LSM1O15116 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC24.06■■□□□ 1.44
LSM1O15116 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC24.05■■□□□ 1.44
LSM1O15116 OTUD5-202ENST00000376488 2692 ntAPPRIS ALT1 TSL 1 (best) BASIC24.05■■□□□ 1.44
LSM1O15116 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC24.05■■□□□ 1.44
LSM1O15116 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC24.04■■□□□ 1.44
LSM1O15116 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC24.04■■□□□ 1.44
LSM1O15116 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC24.04■■□□□ 1.44
LSM1O15116 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC24.04■■□□□ 1.44
LSM1O15116 DCUN1D5-201ENST00000260247 1337 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
LSM1O15116 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC24.03■■□□□ 1.44
LSM1O15116 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
LSM1O15116 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC24.03■■□□□ 1.44
LSM1O15116 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
LSM1O15116 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC24.03■■□□□ 1.44
LSM1O15116 SPTSSA-201ENST00000298130 2777 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
LSM1O15116 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC24.02■■□□□ 1.44
LSM1O15116 NTN3-201ENST00000293973 1986 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
LSM1O15116 MAGI2-211ENST00000535697 6146 ntTSL 5 BASIC24.01■■□□□ 1.43
LSM1O15116 AC110285.7-201ENST00000624417 1536 ntBASIC24■■□□□ 1.43
LSM1O15116 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC24■■□□□ 1.43
LSM1O15116 C14orf80-203ENST00000354560 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC24■■□□□ 1.43
LSM1O15116 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC24■■□□□ 1.43
LSM1O15116 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC24■■□□□ 1.43
Retrieved 100 of 98,524 protein–RNA pairs in 11.2 ms