RNA–Protein interactions for RNA: snR43

snR43, Transcript of H/ACA box small nucleolar RNA (snoRNA), yeast

Gene snR43, Length 209 nt, Biotype snoRNA.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
snR43	snR43	MTC1	P47018	478 aa	Known RBP	6.91	□□□□□ -1.3
snR43	snR43	DRS1	P32892	752 aa	Known RBP	6.85	□□□□□ -1.31
snR43	snR43	FAP1	P53971	965 aa		6.38	□□□□□ -1.39
snR43	snR43	PRY3	P47033	881 aa		6.01	□□□□□ -1.45
snR43	snR43	PRI1	P10363	409 aa		5.93	□□□□□ -1.46
snR43	snR43	AAD16	Q02895	342 aa		5.92	□□□□□ -1.46
snR43	snR43	BFR2	Q06631	534 aa	Known RBP	5.86	□□□□□ -1.47
snR43	snR43	DIP2	Q12220	943 aa	Predicted RBP	5.86	□□□□□ -1.47
snR43	snR43	MON2	P48563	1636 aa	Predicted RBP	5.83	□□□□□ -1.48
snR43	snR43	INO80	P53115	1489 aa		5.81	□□□□□ -1.48
snR43	snR43	ISW2	Q08773	1120 aa		5.76	□□□□□ -1.49
snR43	snR43	AVT3	P36062	692 aa		5.71	□□□□□ -1.5
snR43	snR43	YCK3	P39962	524 aa		5.71	□□□□□ -1.5
snR43	snR43	RPG1	P38249	964 aa	Known RBP	5.7	□□□□□ -1.5
snR43	snR43	HAA1	Q12753	694 aa	Known RBP	5.66	□□□□□ -1.5
snR43	snR43	TSR3	Q12094	313 aa	Known RBP	5.58	□□□□□ -1.52
snR43	snR43	DNA2	P38859	1522 aa		5.54	□□□□□ -1.52
snR43	snR43	RSE1	Q04693	1361 aa	Known RBP	5.52	□□□□□ -1.53
snR43	snR43	SWR1	Q05471	1514 aa		5.5	□□□□□ -1.53
snR43	snR43	KOG1	P38873	1557 aa		5.44	□□□□□ -1.54
snR43	snR43	TCB3	Q03640	1545 aa	Known RBP	5.42	□□□□□ -1.54
snR43	snR43	TY1B-DR4	Q07793	1604 aa		5.38	□□□□□ -1.55
snR43	snR43	RPL17A	P05740	184 aa	Known RBP	5.37	□□□□□ -1.55
snR43	snR43	RPL17B	P46990	184 aa	Known RBP	5.37	□□□□□ -1.55
snR43	snR43	MRPL32	P25348	183 aa		5.36	□□□□□ -1.55
snR43	snR43	TFA1	P36100	482 aa		5.35	□□□□□ -1.55
snR43	snR43	REB1	P21538	810 aa		5.3	□□□□□ -1.56
snR43	snR43	SGS1	P35187	1447 aa		5.25	□□□□□ -1.57
snR43	snR43	YGL015C	P33199	130 aa		5.21	□□□□□ -1.58
snR43	snR43	HSL1	P34244	1518 aa		5.18	□□□□□ -1.58
snR43	snR43	SPT6	P23615	1451 aa	Known RBP	5.17	□□□□□ -1.58
snR43	snR43	SPA2	P23201	1466 aa	Known RBP	5.13	□□□□□ -1.59
snR43	snR43	ECM5	Q03214	1411 aa		5.13	□□□□□ -1.59
snR43	snR43	SPT21	P35209	758 aa		5.12	□□□□□ -1.59
snR43	snR43	BUD4	P47136	1447 aa		5.07	□□□□□ -1.6
snR43	snR43	CDC27	P38042	758 aa		5.07	□□□□□ -1.6
snR43	snR43	THO2	P53552	1597 aa	Known RBP	5.06	□□□□□ -1.6
snR43	snR43	HIR3	P47171	1648 aa		5.05	□□□□□ -1.6
snR43	snR43	YKR023W	P36119	530 aa	Known RBP	5.03	□□□□□ -1.6
snR43	snR43	MDS3	P53094	1487 aa		5.02	□□□□□ -1.61
snR43	snR43	RIM101	P33400	625 aa		5	□□□□□ -1.61
snR43	snR43	DCD1	P06773	312 aa		4.99	□□□□□ -1.61
snR43	snR43	REV3	P14284	1504 aa		4.97	□□□□□ -1.61
snR43	snR43	PEP1	P32319	1579 aa		4.97	□□□□□ -1.61
snR43	snR43	HO	P09932	586 aa		4.97	□□□□□ -1.61
snR43	snR43	UBP10	P53874	792 aa	Predicted RBP	4.96	□□□□□ -1.62
snR43	snR43	XRN1	P22147	1528 aa	Known RBP	4.93	□□□□□ -1.62
snR43	snR43	MAP2	P38174	421 aa	Known RBP	4.93	□□□□□ -1.62
snR43	snR43	TFC8	Q12308	588 aa		4.92	□□□□□ -1.62
snR43	snR43	OXP1	P28273	1286 aa		4.9	□□□□□ -1.63
snR43	snR43	YAH1	Q12184	172 aa	Known RBP	4.89	□□□□□ -1.63
snR43	snR43	ATG2	P53855	1592 aa		4.89	□□□□□ -1.63
snR43	snR43	BPT1	P14772	1559 aa		4.88	□□□□□ -1.63
snR43	snR43	PTP3	P40048	928 aa		4.88	□□□□□ -1.63
snR43	snR43	BUD31	P25337	157 aa	Predicted RBP	4.85	□□□□□ -1.63
snR43	snR43	YIL055C	P40523	627 aa	Known RBP	4.81	□□□□□ -1.64
snR43	snR43	YCF1	P39109	1515 aa	Known RBP	4.81	□□□□□ -1.64
snR43	snR43	SSK2	P53599	1579 aa		4.79	□□□□□ -1.64
snR43	snR43	SIN3	P22579	1536 aa		4.79	□□□□□ -1.64
snR43	snR43	SCY1	P53009	804 aa		4.79	□□□□□ -1.64
snR43	snR43	SKI3	P17883	1432 aa	Known RBP	4.78	□□□□□ -1.64
snR43	snR43	MIF2	P35201	549 aa		4.77	□□□□□ -1.65
snR43	snR43	BCH2	P36122	765 aa		4.77	□□□□□ -1.65
snR43	snR43	SSN2	P38931	1420 aa		4.77	□□□□□ -1.65
snR43	snR43	SLX5	P32828	619 aa	Known RBP	4.75	□□□□□ -1.65
snR43	snR43	TIF4632	P39936	914 aa	Known RBP	4.75	□□□□□ -1.65
snR43	snR43	TGL3	P40308	642 aa		4.75	□□□□□ -1.65
snR43	snR43	TAF2	P23255	1407 aa		4.74	□□□□□ -1.65
snR43	snR43	SSP1	P38871	571 aa		4.74	□□□□□ -1.65
snR43	snR43	YLR271W	Q06152	274 aa		4.74	□□□□□ -1.65
snR43	snR43	UFD4	P33202	1483 aa		4.74	□□□□□ -1.65
snR43	snR43	MET5	P47169	1442 aa		4.72	□□□□□ -1.65
snR43	snR43	RSM7	P47150	247 aa		4.72	□□□□□ -1.65
snR43	snR43	YPK9	Q12697	1472 aa		4.69	□□□□□ -1.66
snR43	snR43	CHD1	P32657	1468 aa		4.69	□□□□□ -1.66
snR43	snR43	SCC2	Q04002	1493 aa		4.69	□□□□□ -1.66
snR43	snR43	ESP1	Q03018	1630 aa		4.68	□□□□□ -1.66
snR43	snR43	LTE1	P07866	1435 aa		4.68	□□□□□ -1.66
snR43	snR43	MYO2	P19524	1574 aa	Known RBP	4.68	□□□□□ -1.66
snR43	snR43	RPO31	P04051	1460 aa		4.68	□□□□□ -1.66
snR43	snR43	DNF1	P32660	1571 aa		4.67	□□□□□ -1.66
snR43	snR43	AI2	P03876	854 aa		4.67	□□□□□ -1.66
snR43	snR43	EPS1	P40557	701 aa		4.67	□□□□□ -1.66
snR43	snR43	CDC25	P04821	1589 aa		4.65	□□□□□ -1.66
snR43	snR43	ARP8	Q12386	881 aa	Known RBP RIP-Chip data	4.65	□□□□□ -1.67	not detected
snR43	snR43	BDF1	P35817	686 aa		4.64	□□□□□ -1.67
snR43	snR43	UBP9	P39967	754 aa		4.64	□□□□□ -1.67
snR43	snR43	CST9	Q06032	482 aa		4.63	□□□□□ -1.67
snR43	snR43	PAN1	P32521	1480 aa		4.62	□□□□□ -1.67
snR43	snR43	RKR1	Q04781	1562 aa		4.62	□□□□□ -1.67
snR43	snR43	BNI1	P41832	1953 aa		4.62	□□□□□ -1.67
snR43	snR43	BBC1	P47068	1157 aa		4.61	□□□□□ -1.67
snR43	snR43	YFR006W	P43590	535 aa		4.6	□□□□□ -1.67
snR43	snR43	ITT1	Q04638	464 aa		4.6	□□□□□ -1.67
snR43	snR43	RPA190	P10964	1664 aa	Known RBP	4.59	□□□□□ -1.67
snR43	snR43	GEA2	P39993	1459 aa	Known RBP	4.59	□□□□□ -1.67
snR43	snR43	PSD2	P53037	1138 aa	Known RBP	4.59	□□□□□ -1.67
snR43	snR43	TOP2	P06786	1428 aa	Known RBP	4.58	□□□□□ -1.68
snR43	snR43	SIS1	P25294	352 aa	Known RBP	4.58	□□□□□ -1.68
snR43	snR43	TY2B-LR1	P0C2J3	1770 aa		4.57	□□□□□ -1.68

Retrieved 100 of 5,963 RNA–protein pairs in 20.1 ms