RNA–Protein interactions for RNA: YNL232W

CSL4, Transcript of Exosome non-catalytic core component, yeast

Gene CSL4, Length 879 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CSL4	YNL232W	MTC1	P47018	478 aa	Known RBP	18.13	■□□□□ 0.49
CSL4	YNL232W	DRS1	P32892	752 aa	Known RBP	16.73	■□□□□ 0.27
CSL4	YNL232W	FAP1	P53971	965 aa		16.55	■□□□□ 0.24
CSL4	YNL232W	PRY3	P47033	881 aa		15.57	■□□□□ 0.08
CSL4	YNL232W	PRI1	P10363	409 aa		15.4	■□□□□ 0.06
CSL4	YNL232W	AAD16	Q02895	342 aa		15.32	■□□□□ 0.04
CSL4	YNL232W	ISW2	Q08773	1120 aa		15.05	■□□□□ -0
CSL4	YNL232W	RPG1	P38249	964 aa	Known RBP	14.93	□□□□□ -0.02
CSL4	YNL232W	YCK3	P39962	524 aa		14.74	□□□□□ -0.05
CSL4	YNL232W	DIP2	Q12220	943 aa	Predicted RBP	14.74	□□□□□ -0.05
CSL4	YNL232W	TSR3	Q12094	313 aa	Known RBP	14.57	□□□□□ -0.08
CSL4	YNL232W	HAA1	Q12753	694 aa	Known RBP	14.56	□□□□□ -0.08
CSL4	YNL232W	RSE1	Q04693	1361 aa	Known RBP	14.29	□□□□□ -0.12
CSL4	YNL232W	AVT3	P36062	692 aa		14.15	□□□□□ -0.14
CSL4	YNL232W	MRPL32	P25348	183 aa		13.96	□□□□□ -0.17
CSL4	YNL232W	RPL17A	P05740	184 aa	Known RBP	13.88	□□□□□ -0.19
CSL4	YNL232W	RPL17B	P46990	184 aa	Known RBP	13.88	□□□□□ -0.19
CSL4	YNL232W	REB1	P21538	810 aa		13.82	□□□□□ -0.2
CSL4	YNL232W	BFR2	Q06631	534 aa	Known RBP	13.8	□□□□□ -0.2
CSL4	YNL232W	YGL015C	P33199	130 aa		13.43	□□□□□ -0.26
CSL4	YNL232W	MON2	P48563	1636 aa	Predicted RBP	13.42	□□□□□ -0.26
CSL4	YNL232W	INO80	P53115	1489 aa		13.36	□□□□□ -0.27
CSL4	YNL232W	CDC27	P38042	758 aa		13.27	□□□□□ -0.29
CSL4	YNL232W	SPT21	P35209	758 aa		13.26	□□□□□ -0.29
CSL4	YNL232W	YKR023W	P36119	530 aa	Known RBP	13.18	□□□□□ -0.3
CSL4	YNL232W	HO	P09932	586 aa		12.92	□□□□□ -0.34
CSL4	YNL232W	TFC8	Q12308	588 aa		12.9	□□□□□ -0.34
CSL4	YNL232W	DCD1	P06773	312 aa		12.88	□□□□□ -0.35
CSL4	YNL232W	MAP2	P38174	421 aa	Known RBP	12.87	□□□□□ -0.35
CSL4	YNL232W	UBP10	P53874	792 aa	Predicted RBP	12.87	□□□□□ -0.35
CSL4	YNL232W	DNA2	P38859	1522 aa		12.77	□□□□□ -0.37
CSL4	YNL232W	RIM101	P33400	625 aa		12.75	□□□□□ -0.37
CSL4	YNL232W	SWR1	Q05471	1514 aa		12.61	□□□□□ -0.39
CSL4	YNL232W	SCY1	P53009	804 aa		12.57	□□□□□ -0.4
CSL4	YNL232W	KOG1	P38873	1557 aa		12.52	□□□□□ -0.41
CSL4	YNL232W	BCH2	P36122	765 aa		12.47	□□□□□ -0.41
CSL4	YNL232W	BUD31	P25337	157 aa	Predicted RBP	12.41	□□□□□ -0.42
CSL4	YNL232W	SLX5	P32828	619 aa	Known RBP	12.41	□□□□□ -0.42
CSL4	YNL232W	TY1B-DR4	Q07793	1604 aa		12.37	□□□□□ -0.43
CSL4	YNL232W	OXP1	P28273	1286 aa		12.34	□□□□□ -0.43
CSL4	YNL232W	TIF4632	P39936	914 aa	Known RBP	12.34	□□□□□ -0.43
CSL4	YNL232W	TCB3	Q03640	1545 aa	Known RBP	12.29	□□□□□ -0.44
CSL4	YNL232W	TGL3	P40308	642 aa		12.28	□□□□□ -0.44
CSL4	YNL232W	EPS1	P40557	701 aa		12.14	□□□□□ -0.47
CSL4	YNL232W	PTP3	P40048	928 aa		12.13	□□□□□ -0.47
CSL4	YNL232W	YIL055C	P40523	627 aa	Known RBP	12.12	□□□□□ -0.47
CSL4	YNL232W	BDF1	P35817	686 aa		12.1	□□□□□ -0.47
CSL4	YNL232W	TFA1	P36100	482 aa		11.95	□□□□□ -0.5
CSL4	YNL232W	UBP9	P39967	754 aa		11.95	□□□□□ -0.5
CSL4	YNL232W	RSM7	P47150	247 aa		11.95	□□□□□ -0.5
CSL4	YNL232W	YAH1	Q12184	172 aa	Known RBP	11.94	□□□□□ -0.5
CSL4	YNL232W	AI2	P03876	854 aa		11.86	□□□□□ -0.51
CSL4	YNL232W	BBC1	P47068	1157 aa		11.86	□□□□□ -0.51
CSL4	YNL232W	SPA2	P23201	1466 aa	Known RBP	11.85	□□□□□ -0.51
CSL4	YNL232W	SGS1	P35187	1447 aa		11.84	□□□□□ -0.51
CSL4	YNL232W	HSL1	P34244	1518 aa		11.82	□□□□□ -0.52
CSL4	YNL232W	SIS1	P25294	352 aa	Known RBP	11.8	□□□□□ -0.52
CSL4	YNL232W	SPT6	P23615	1451 aa	Known RBP	11.8	□□□□□ -0.52
CSL4	YNL232W	MST1	P07236	462 aa		11.76	□□□□□ -0.53
CSL4	YNL232W	YLR271W	Q06152	274 aa		11.73	□□□□□ -0.53
CSL4	YNL232W	YOR238W	Q08634	303 aa		11.71	□□□□□ -0.53
CSL4	YNL232W	ECM5	Q03214	1411 aa		11.7	□□□□□ -0.54
CSL4	YNL232W	NSR1	P27476	414 aa	Known RBP RIP-Chip data	11.67	□□□□□ -0.54	not detected
CSL4	YNL232W	YBL029C-A	Q3E756	94 aa		11.63	□□□□□ -0.55
CSL4	YNL232W	YAP5	P40574	245 aa		11.6	□□□□□ -0.55
CSL4	YNL232W	THO2	P53552	1597 aa	Known RBP	11.58	□□□□□ -0.56
CSL4	YNL232W	PSD2	P53037	1138 aa	Known RBP	11.57	□□□□□ -0.56
CSL4	YNL232W	BUD4	P47136	1447 aa		11.55	□□□□□ -0.56
CSL4	YNL232W	HIR3	P47171	1648 aa		11.54	□□□□□ -0.56
CSL4	YNL232W	SSP1	P38871	571 aa		11.51	□□□□□ -0.57
CSL4	YNL232W	VNX1	P42839	908 aa		11.49	□□□□□ -0.57
CSL4	YNL232W	MDS3	P53094	1487 aa		11.49	□□□□□ -0.57
CSL4	YNL232W	MRM1	P25270	412 aa		11.44	□□□□□ -0.58
CSL4	YNL232W	WSC3	Q12215	556 aa		11.43	□□□□□ -0.58
CSL4	YNL232W	ARP8	Q12386	881 aa	Known RBP RIP-Chip data	11.43	□□□□□ -0.58	not detected
CSL4	YNL232W	REV3	P14284	1504 aa		11.38	□□□□□ -0.59
CSL4	YNL232W	SPP1	Q03012	353 aa		11.36	□□□□□ -0.59
CSL4	YNL232W	PEP1	P32319	1579 aa		11.36	□□□□□ -0.59
CSL4	YNL232W	GTT3	P39996	337 aa		11.35	□□□□□ -0.59
CSL4	YNL232W	PIB1	Q06651	286 aa		11.35	□□□□□ -0.59
CSL4	YNL232W	CST9	Q06032	482 aa		11.32	□□□□□ -0.6
CSL4	YNL232W	TIF11	P38912	153 aa	Known RBP	11.26	□□□□□ -0.61
CSL4	YNL232W	XRN1	P22147	1528 aa	Known RBP	11.25	□□□□□ -0.61
CSL4	YNL232W	BPT1	P14772	1559 aa		11.24	□□□□□ -0.61
CSL4	YNL232W	MGA2	P40578	1113 aa		11.24	□□□□□ -0.61
CSL4	YNL232W	ATG2	P53855	1592 aa		11.23	□□□□□ -0.61
CSL4	YNL232W	VPS29	P38759	282 aa		11.19	□□□□□ -0.62
CSL4	YNL232W	RTG3	P38165	486 aa		11.15	□□□□□ -0.62
CSL4	YNL232W	YMR1	P47147	688 aa	Known RBP RIP-Chip data	11.15	□□□□□ -0.62	not detected
CSL4	YNL232W	DBP1	P24784	617 aa	Known RBP	11.13	□□□□□ -0.63
CSL4	YNL232W	FKH1	P40466	484 aa		11.13	□□□□□ -0.63
CSL4	YNL232W	ULI1	P43604	169 aa		11.13	□□□□□ -0.63
CSL4	YNL232W	AIR2	Q12476	344 aa	Known RBP	11.13	□□□□□ -0.63
CSL4	YNL232W	YFR006W	P43590	535 aa		11.12	□□□□□ -0.63
CSL4	YNL232W	LDB19	Q12502	818 aa		11.1	□□□□□ -0.63
CSL4	YNL232W	IOC2	Q12072	812 aa		11.09	□□□□□ -0.63
CSL4	YNL232W	STS1	P38637	319 aa		11.08	□□□□□ -0.64
CSL4	YNL232W	RCR1	P38212	213 aa		11.07	□□□□□ -0.64
CSL4	YNL232W	MSB4	Q12317	492 aa		11.05	□□□□□ -0.64
CSL4	YNL232W	SET4	P42948	560 aa		11.04	□□□□□ -0.64

Retrieved 100 of 5,963 RNA–protein pairs in 14.9 ms