RNA–Protein interactions for RNA: YMR128W

ECM16, Transcript of Essential DEAH-box ATP-dependent RNA helicase specific to U3 snoRNP, yeastyeast

Gene ECM16, Length 3,804 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
ECM16YMR128W DRS1P32892 752 aaKnown RBP8.02□□□□□ -1.13
ECM16YMR128W MTC1P47018 478 aaKnown RBP7.8□□□□□ -1.16
ECM16YMR128W TFA1P36100 482 aa7.09□□□□□ -1.27
ECM16YMR128W AVT3P36062 692 aa7.06□□□□□ -1.28
ECM16YMR128W BFR2Q06631 534 aaKnown RBP6.99□□□□□ -1.29
ECM16YMR128W DIP2Q12220 943 aaPredicted RBP6.79□□□□□ -1.32
ECM16YMR128W SGS1P35187 1447 aa6.27□□□□□ -1.41
ECM16YMR128W RSE1Q04693 1361 aaKnown RBP6.16□□□□□ -1.42
ECM16YMR128W PRI1P10363 409 aa6.15□□□□□ -1.43
ECM16YMR128W SPA2P23201 1466 aaKnown RBP6.15□□□□□ -1.43
ECM16YMR128W SPT21P35209 758 aa6.14□□□□□ -1.43
ECM16YMR128W SSN2P38931 1420 aa6.13□□□□□ -1.43
ECM16YMR128W RPG1P38249 964 aaKnown RBP6.08□□□□□ -1.44
ECM16YMR128W RIM101P33400 625 aa6.04□□□□□ -1.44
ECM16YMR128W ISW2Q08773 1120 aa5.99□□□□□ -1.45
ECM16YMR128W INO80P53115 1489 aa5.97□□□□□ -1.45
ECM16YMR128W OXP1P28273 1286 aa5.94□□□□□ -1.46
ECM16YMR128W RPL17AP05740 184 aaKnown RBP5.94□□□□□ -1.46
ECM16YMR128W RPL17BP46990 184 aaKnown RBP5.94□□□□□ -1.46
ECM16YMR128W DMA1P38823 416 aa5.9□□□□□ -1.47
ECM16YMR128W YKR023WP36119 530 aaKnown RBP5.85□□□□□ -1.47
ECM16YMR128W YCK3P39962 524 aa5.83□□□□□ -1.48
ECM16YMR128W TCB3Q03640 1545 aaKnown RBP5.83□□□□□ -1.48
ECM16YMR128W TY1B-DR4Q07793 1604 aa5.82□□□□□ -1.48
ECM16YMR128W YLR271WQ06152 274 aa5.78□□□□□ -1.48
ECM16YMR128W HSL1P34244 1518 aa5.77□□□□□ -1.49
ECM16YMR128W AAD16Q02895 342 aa5.77□□□□□ -1.49
ECM16YMR128W PTP3P40048 928 aa5.76□□□□□ -1.49
ECM16YMR128W TSR3Q12094 313 aaKnown RBP5.73□□□□□ -1.49
ECM16YMR128W SPT6P23615 1451 aaKnown RBP5.72□□□□□ -1.49
ECM16YMR128W SSP1P38871 571 aa5.71□□□□□ -1.5
ECM16YMR128W SAS10Q12136 610 aaPredicted RBP5.71□□□□□ -1.5
ECM16YMR128W XRN1P22147 1528 aaKnown RBP5.69□□□□□ -1.5
ECM16YMR128W HIR3P47171 1648 aa5.69□□□□□ -1.5
ECM16YMR128W REB1P21538 810 aa5.67□□□□□ -1.5
ECM16YMR128W SKI3P17883 1432 aaKnown RBP5.66□□□□□ -1.5
ECM16YMR128W CST9Q06032 482 aa5.64□□□□□ -1.51
ECM16YMR128W FAP1P53971 965 aa5.63□□□□□ -1.51
ECM16YMR128W RQC2Q12532 1038 aaKnown RBP5.63□□□□□ -1.51
ECM16YMR128W TFC8Q12308 588 aa5.62□□□□□ -1.51
ECM16YMR128W REV3P14284 1504 aa5.61□□□□□ -1.51
ECM16YMR128W PSD2P53037 1138 aaKnown RBP5.61□□□□□ -1.51
ECM16YMR128W MMS22Q06164 1454 aa5.61□□□□□ -1.51
ECM16YMR128W TAF2P23255 1407 aa5.6□□□□□ -1.51
ECM16YMR128W DCD1P06773 312 aa5.6□□□□□ -1.51
ECM16YMR128W CDC27P38042 758 aa5.6□□□□□ -1.51
ECM16YMR128W ABP1P15891 592 aaKnown RBP5.58□□□□□ -1.52
ECM16YMR128W SWR1Q05471 1514 aa5.57□□□□□ -1.52
ECM16YMR128W SSK2P53599 1579 aa5.57□□□□□ -1.52
ECM16YMR128W THO2P53552 1597 aaKnown RBP5.56□□□□□ -1.52
ECM16YMR128W CHD1P32657 1468 aa5.56□□□□□ -1.52
ECM16YMR128W MON2P48563 1636 aaPredicted RBP5.54□□□□□ -1.52
ECM16YMR128W SIN3P22579 1536 aa5.54□□□□□ -1.52
ECM16YMR128W HOP09932 586 aa5.54□□□□□ -1.52
ECM16YMR128W ESP1Q03018 1630 aa5.52□□□□□ -1.53
ECM16YMR128W LEO1P38439 464 aa5.51□□□□□ -1.53
ECM16YMR128W YAH1Q12184 172 aaKnown RBP5.51□□□□□ -1.53
ECM16YMR128W TAF7Q05021 590 aa5.5□□□□□ -1.53
ECM16YMR128W BPT1P14772 1559 aa5.5□□□□□ -1.53
ECM16YMR128W RCR1P38212 213 aa5.5□□□□□ -1.53
ECM16YMR128W BCH2P36122 765 aa5.5□□□□□ -1.53
ECM16YMR128W MGA2P40578 1113 aa5.5□□□□□ -1.53
ECM16YMR128W NSR1P27476 414 aaKnown RBP RIP-Chip data5.49□□□□□ -1.53not detected
ECM16YMR128W STU1P38198 1513 aa5.48□□□□□ -1.53
ECM16YMR128W RSM7P47150 247 aa5.47□□□□□ -1.53
ECM16YMR128W RAM2P29703 316 aa5.47□□□□□ -1.53
ECM16YMR128W UFD4P33202 1483 aa5.46□□□□□ -1.53
ECM16YMR128W TRM732Q03496 1420 aa5.46□□□□□ -1.54
ECM16YMR128W POL1P13382 1468 aa5.45□□□□□ -1.54
ECM16YMR128W LEU3P08638 886 aa5.45□□□□□ -1.54
ECM16YMR128W MYO2P19524 1574 aaKnown RBP5.45□□□□□ -1.54
ECM16YMR128W SCC2Q04002 1493 aa5.43□□□□□ -1.54
ECM16YMR128W ATG2P53855 1592 aa5.42□□□□□ -1.54
ECM16YMR128W AI2P03876 854 aa5.4□□□□□ -1.54
ECM16YMR128W YPR148CQ06523 435 aa5.38□□□□□ -1.55
ECM16YMR128W NOP2P40991 618 aaKnown RBP5.38□□□□□ -1.55
ECM16YMR128W YPK9Q12697 1472 aa5.38□□□□□ -1.55
ECM16YMR128W RKR1Q04781 1562 aa5.37□□□□□ -1.55
ECM16YMR128W YTA7P40340 1379 aa5.37□□□□□ -1.55
ECM16YMR128W SSM4P40318 1319 aa5.37□□□□□ -1.55
ECM16YMR128W ECM5Q03214 1411 aa5.37□□□□□ -1.55
ECM16YMR128W PRY3P47033 881 aa5.36□□□□□ -1.55
ECM16YMR128W BUD4P47136 1447 aa5.36□□□□□ -1.55
ECM16YMR128W IKI3Q06706 1349 aaKnown RBP5.36□□□□□ -1.55
ECM16YMR128W DNA2P38859 1522 aa5.35□□□□□ -1.55
ECM16YMR128W YOR1P53049 1477 aa5.35□□□□□ -1.55
ECM16YMR128W BDF1P35817 686 aa5.35□□□□□ -1.55
ECM16YMR128W NUP170P38181 1502 aa5.32□□□□□ -1.56
ECM16YMR128W TY1B-DR3Q99231 1755 aa5.32□□□□□ -1.56
ECM16YMR128W YIL055CP40523 627 aaKnown RBP5.32□□□□□ -1.56
ECM16YMR128W EPS1P40557 701 aa5.32□□□□□ -1.56
ECM16YMR128W VPS29P38759 282 aa5.31□□□□□ -1.56
ECM16YMR128W PEP1P32319 1579 aa5.31□□□□□ -1.56
ECM16YMR128W TY2B-LR1P0C2J3 1770 aa5.31□□□□□ -1.56
ECM16YMR128W TY2B-FP0CX63 1770 aa5.31□□□□□ -1.56
ECM16YMR128W TY2B-GR2P0CX64 1770 aa5.31□□□□□ -1.56
ECM16YMR128W TY2B-CP25384 1770 aa5.31□□□□□ -1.56
ECM16YMR128W TY2B-DR2Q03494 1770 aa5.31□□□□□ -1.56
ECM16YMR128W TY1B-DR1Q03855 1755 aa5.31□□□□□ -1.56
ECM16YMR128W TY2B-DR3Q07791 1770 aaKnown RBP5.31□□□□□ -1.56
Retrieved 100 of 5,963 RNA–protein pairs in 16.7 ms