RNA–Protein interactions for RNA: YMR012W

CLU1, Transcript of Subunit of the eukaryotic translation initiation factor 3 (eIF3), yeast

Gene CLU1, Length 3,834 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CLU1	YMR012W	DRS1	P32892	752 aa	Known RBP	3.81	□□□□□ -1.8
CLU1	YMR012W	MON2	P48563	1636 aa	Predicted RBP	3.5	□□□□□ -1.85
CLU1	YMR012W	BFR2	Q06631	534 aa	Known RBP	3.46	□□□□□ -1.86
CLU1	YMR012W	INO80	P53115	1489 aa		3.3	□□□□□ -1.88
CLU1	YMR012W	KOG1	P38873	1557 aa		3.26	□□□□□ -1.89
CLU1	YMR012W	RSE1	Q04693	1361 aa	Known RBP	3.23	□□□□□ -1.89
CLU1	YMR012W	MIF2	P35201	549 aa		3.2	□□□□□ -1.9
CLU1	YMR012W	MTC1	P47018	478 aa	Known RBP	3.18	□□□□□ -1.9
CLU1	YMR012W	SPA2	P23201	1466 aa	Known RBP	3.18	□□□□□ -1.9
CLU1	YMR012W	DMA1	P38823	416 aa		3.15	□□□□□ -1.9
CLU1	YMR012W	SWR1	Q05471	1514 aa		3.15	□□□□□ -1.9
CLU1	YMR012W	TFA1	P36100	482 aa		3.14	□□□□□ -1.91
CLU1	YMR012W	FAP1	P53971	965 aa		3.14	□□□□□ -1.91
CLU1	YMR012W	DNA2	P38859	1522 aa		3.12	□□□□□ -1.91
CLU1	YMR012W	PTP3	P40048	928 aa		3.11	□□□□□ -1.91
CLU1	YMR012W	RQC2	Q12532	1038 aa	Known RBP	3.01	□□□□□ -1.93
CLU1	YMR012W	DIP2	Q12220	943 aa	Predicted RBP	2.98	□□□□□ -1.93
CLU1	YMR012W	PRY3	P47033	881 aa		2.95	□□□□□ -1.94
CLU1	YMR012W	TCB3	Q03640	1545 aa	Known RBP	2.93	□□□□□ -1.94
CLU1	YMR012W	TAF7	Q05021	590 aa		2.92	□□□□□ -1.94
CLU1	YMR012W	THO2	P53552	1597 aa	Known RBP	2.88	□□□□□ -1.95
CLU1	YMR012W	TY1B-DR4	Q07793	1604 aa		2.88	□□□□□ -1.95
CLU1	YMR012W	YAH1	Q12184	172 aa	Known RBP	2.88	□□□□□ -1.95
CLU1	YMR012W	DNF1	P32660	1571 aa		2.88	□□□□□ -1.95
CLU1	YMR012W	AAD16	Q02895	342 aa		2.87	□□□□□ -1.95
CLU1	YMR012W	REV3	P14284	1504 aa		2.86	□□□□□ -1.95
CLU1	YMR012W	SSK2	P53599	1579 aa		2.86	□□□□□ -1.95
CLU1	YMR012W	YFR006W	P43590	535 aa		2.85	□□□□□ -1.95
CLU1	YMR012W	MYO2	P19524	1574 aa	Known RBP	2.84	□□□□□ -1.95
CLU1	YMR012W	HAA1	Q12753	694 aa	Known RBP	2.84	□□□□□ -1.96
CLU1	YMR012W	LTE1	P07866	1435 aa		2.83	□□□□□ -1.96
CLU1	YMR012W	PRI1	P10363	409 aa		2.83	□□□□□ -1.96
CLU1	YMR012W	MDS3	P53094	1487 aa		2.82	□□□□□ -1.96
CLU1	YMR012W	IRC20	Q06554	1556 aa		2.82	□□□□□ -1.96
CLU1	YMR012W	DMA2	P53924	522 aa		2.82	□□□□□ -1.96
CLU1	YMR012W	AVT3	P36062	692 aa		2.8	□□□□□ -1.96
CLU1	YMR012W	PEP1	P32319	1579 aa		2.78	□□□□□ -1.96
CLU1	YMR012W	ESC1	Q03661	1658 aa	Known RBP	2.78	□□□□□ -1.97
CLU1	YMR012W	MET5	P47169	1442 aa		2.77	□□□□□ -1.97
CLU1	YMR012W	ISW2	Q08773	1120 aa		2.75	□□□□□ -1.97
CLU1	YMR012W	BUD4	P47136	1447 aa		2.71	□□□□□ -1.98
CLU1	YMR012W	YCK3	P39962	524 aa		2.7	□□□□□ -1.98
CLU1	YMR012W	YOR093C	Q12275	1648 aa		2.7	□□□□□ -1.98
CLU1	YMR012W	BPT1	P14772	1559 aa		2.7	□□□□□ -1.98
CLU1	YMR012W	GEA2	P39993	1459 aa	Known RBP	2.69	□□□□□ -1.98
CLU1	YMR012W	RPA190	P10964	1664 aa	Known RBP	2.68	□□□□□ -1.98
CLU1	YMR012W	RPL17A	P05740	184 aa	Known RBP	2.68	□□□□□ -1.98
CLU1	YMR012W	RPL17B	P46990	184 aa	Known RBP	2.68	□□□□□ -1.98
CLU1	YMR012W	YCF1	P39109	1515 aa	Known RBP	2.67	□□□□□ -1.98
CLU1	YMR012W	SGS1	P35187	1447 aa		2.67	□□□□□ -1.98
CLU1	YMR012W	RPG1	P38249	964 aa	Known RBP	2.65	□□□□□ -1.98
CLU1	YMR012W	CDC25	P04821	1589 aa		2.65	□□□□□ -1.99
CLU1	YMR012W	HIR3	P47171	1648 aa		2.63	□□□□□ -1.99
CLU1	YMR012W	DCD1	P06773	312 aa		2.63	□□□□□ -1.99
CLU1	YMR012W	BNI1	P41832	1953 aa		2.62	□□□□□ -1.99
CLU1	YMR012W	TSR3	Q12094	313 aa	Known RBP	2.61	□□□□□ -1.99
CLU1	YMR012W	RPO31	P04051	1460 aa		2.61	□□□□□ -1.99
CLU1	YMR012W	ABP1	P15891	592 aa	Known RBP	2.61	□□□□□ -1.99
CLU1	YMR012W	REB1	P21538	810 aa		2.61	□□□□□ -1.99
CLU1	YMR012W	ECM5	Q03214	1411 aa		2.6	□□□□□ -1.99
CLU1	YMR012W	SPB4	P25808	606 aa	Predicted RBP	2.6	□□□□□ -1.99
CLU1	YMR012W	MRPL32	P25348	183 aa		2.59	□□□□□ -1.99
CLU1	YMR012W	MMS1	Q06211	1407 aa		2.59	□□□□□ -1.99
CLU1	YMR012W	SPT6	P23615	1451 aa	Known RBP	2.58	□□□□□ -2
CLU1	YMR012W	YGL015C	P33199	130 aa		2.58	□□□□□ -2
CLU1	YMR012W	RKR1	Q04781	1562 aa		2.58	□□□□□ -2
CLU1	YMR012W	DNF2	Q12675	1612 aa		2.58	□□□□□ -2
CLU1	YMR012W	NTE1	Q04958	1679 aa		2.58	□□□□□ -2
CLU1	YMR012W	HSL1	P34244	1518 aa		2.57	□□□□□ -2
CLU1	YMR012W	PDR15	Q04182	1529 aa	Known RBP	2.56	□□□□□ -2
CLU1	YMR012W	SSP1	P38871	571 aa		2.54	□□□□□ -2
CLU1	YMR012W	CST9	Q06032	482 aa		2.54	□□□□□ -2
CLU1	YMR012W	HO	P09932	586 aa		2.53	□□□□□ -2
CLU1	YMR012W	DRS2	P39524	1355 aa		2.53	□□□□□ -2
CLU1	YMR012W	SIN3	P22579	1536 aa		2.53	□□□□□ -2
CLU1	YMR012W	YIL055C	P40523	627 aa	Known RBP	2.53	□□□□□ -2
CLU1	YMR012W	VPS70	P47161	811 aa		2.52	□□□□□ -2.01
CLU1	YMR012W	TRM3	Q07527	1436 aa		2.51	□□□□□ -2.01
CLU1	YMR012W	LEO1	P38439	464 aa		2.5	□□□□□ -2.01
CLU1	YMR012W	RCR1	P38212	213 aa		2.49	□□□□□ -2.01
CLU1	YMR012W	ATG2	P53855	1592 aa		2.49	□□□□□ -2.01
CLU1	YMR012W	EDE1	P34216	1381 aa		2.49	□□□□□ -2.01
CLU1	YMR012W	ESP1	Q03018	1630 aa		2.48	□□□□□ -2.01
CLU1	YMR012W	GLC3	P32775	704 aa		2.47	□□□□□ -2.01
CLU1	YMR012W	BUD31	P25337	157 aa	Predicted RBP	2.47	□□□□□ -2.01
CLU1	YMR012W	YLR271W	Q06152	274 aa		2.46	□□□□□ -2.02
CLU1	YMR012W	TAF2	P23255	1407 aa		2.46	□□□□□ -2.02
CLU1	YMR012W	PIB1	Q06651	286 aa		2.46	□□□□□ -2.02
CLU1	YMR012W	IOC4	Q04213	475 aa		2.45	□□□□□ -2.02
CLU1	YMR012W	OXP1	P28273	1286 aa		2.45	□□□□□ -2.02
CLU1	YMR012W	TRM732	Q03496	1420 aa		2.45	□□□□□ -2.02
CLU1	YMR012W	DOP1	Q03921	1698 aa		2.44	□□□□□ -2.02
CLU1	YMR012W	HAP1	P0CE41	1502 aa		2.44	□□□□□ -2.02
CLU1	YMR012W	YPK9	Q12697	1472 aa		2.43	□□□□□ -2.02
CLU1	YMR012W	ERG12	P07277	443 aa		2.42	□□□□□ -2.02
CLU1	YMR012W	YJL007C	P47080	104 aa		2.42	□□□□□ -2.02
CLU1	YMR012W	UBP10	P53874	792 aa	Predicted RBP	2.41	□□□□□ -2.02
CLU1	YMR012W	PKC1	P24583	1151 aa		2.4	□□□□□ -2.02
CLU1	YMR012W	CHD1	P32657	1468 aa		2.4	□□□□□ -2.03
CLU1	YMR012W	VPS15	P22219	1454 aa		2.4	□□□□□ -2.03

Retrieved 100 of 5,963 RNA–protein pairs in 13.4 ms