RNA–Protein interactions for RNA: YLR440C

SEC39, Transcript of Component of the Dsl1p tethering complex, yeastyeast

Gene SEC39, Length 2,130 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SEC39YLR440C RQC2Q12532 1038 aaKnown RBP8.68□□□□□ -1.02
SEC39YLR440C MON2P48563 1636 aaPredicted RBP8.17□□□□□ -1.1
SEC39YLR440C INO80P53115 1489 aa8.17□□□□□ -1.1
SEC39YLR440C TAF7Q05021 590 aa8.1□□□□□ -1.11
SEC39YLR440C BFR2Q06631 534 aaKnown RBP8.09□□□□□ -1.11
SEC39YLR440C TFA1P36100 482 aa7.81□□□□□ -1.16
SEC39YLR440C DNA2P38859 1522 aa7.79□□□□□ -1.16
SEC39YLR440C SWR1Q05471 1514 aa7.79□□□□□ -1.16
SEC39YLR440C DRS1P32892 752 aaKnown RBP7.78□□□□□ -1.16
SEC39YLR440C TCB3Q03640 1545 aaKnown RBP7.72□□□□□ -1.17
SEC39YLR440C TY1B-DR4Q07793 1604 aa7.69□□□□□ -1.18
SEC39YLR440C KOG1P38873 1557 aa7.66□□□□□ -1.18
SEC39YLR440C SGS1P35187 1447 aa7.6□□□□□ -1.19
SEC39YLR440C URN1Q06525 465 aaKnown RBP7.58□□□□□ -1.2
SEC39YLR440C RSE1Q04693 1361 aaKnown RBP7.51□□□□□ -1.21
SEC39YLR440C HSL1P34244 1518 aa7.43□□□□□ -1.22
SEC39YLR440C SPT6P23615 1451 aaKnown RBP7.42□□□□□ -1.22
SEC39YLR440C SPA2P23201 1466 aaKnown RBP7.34□□□□□ -1.23
SEC39YLR440C ECM5Q03214 1411 aa7.28□□□□□ -1.24
SEC39YLR440C HIR3P47171 1648 aa7.26□□□□□ -1.25
SEC39YLR440C BUD4P47136 1447 aa7.22□□□□□ -1.25
SEC39YLR440C THO2P53552 1597 aaKnown RBP7.21□□□□□ -1.26
SEC39YLR440C SIS2P36024 562 aa7.15□□□□□ -1.26
SEC39YLR440C MDS3P53094 1487 aa7.15□□□□□ -1.27
SEC39YLR440C XRN1P22147 1528 aaKnown RBP7.13□□□□□ -1.27
SEC39YLR440C MTC1P47018 478 aaKnown RBP7.13□□□□□ -1.27
SEC39YLR440C LEO1P38439 464 aa7.1□□□□□ -1.27
SEC39YLR440C YRB30P53107 440 aaPredicted RBP7.09□□□□□ -1.27
SEC39YLR440C NAP1P25293 417 aaKnown RBP7.07□□□□□ -1.28
SEC39YLR440C PEP1P32319 1579 aa7.07□□□□□ -1.28
SEC39YLR440C EBP2P36049 427 aaKnown RBP7.06□□□□□ -1.28
SEC39YLR440C CAB3P36076 571 aa7.05□□□□□ -1.28
SEC39YLR440C FAP1P53971 965 aa7.04□□□□□ -1.28
SEC39YLR440C ATG2P53855 1592 aa7.01□□□□□ -1.29
SEC39YLR440C REV3P14284 1504 aa7.01□□□□□ -1.29
SEC39YLR440C YFR016CP43597 1233 aaKnown RBP7.01□□□□□ -1.29
SEC39YLR440C SSN2P38931 1420 aa6.98□□□□□ -1.29
SEC39YLR440C AIM44Q99299 758 aa6.98□□□□□ -1.29
SEC39YLR440C IOC4Q04213 475 aa6.97□□□□□ -1.29
SEC39YLR440C BPT1P14772 1559 aa6.96□□□□□ -1.3
SEC39YLR440C TAF2P23255 1407 aa6.92□□□□□ -1.3
SEC39YLR440C DMA1P38823 416 aa6.92□□□□□ -1.3
SEC39YLR440C SKI3P17883 1432 aaKnown RBP6.91□□□□□ -1.3
SEC39YLR440C SIN3P22579 1536 aa6.9□□□□□ -1.3
SEC39YLR440C RPS0BP46654 252 aaKnown RBP6.9□□□□□ -1.3
SEC39YLR440C DIP2Q12220 943 aaPredicted RBP6.88□□□□□ -1.31
SEC39YLR440C SSK2P53599 1579 aa6.86□□□□□ -1.31
SEC39YLR440C KRI1P42846 591 aaKnown RBP6.86□□□□□ -1.31
SEC39YLR440C YCF1P39109 1515 aaKnown RBP6.84□□□□□ -1.31
SEC39YLR440C AVT3P36062 692 aa6.82□□□□□ -1.32
SEC39YLR440C ESP1Q03018 1630 aa6.8□□□□□ -1.32
SEC39YLR440C MNN4P36044 1178 aa6.8□□□□□ -1.32
SEC39YLR440C UFD4P33202 1483 aa6.79□□□□□ -1.32
SEC39YLR440C NOP2P40991 618 aaKnown RBP6.79□□□□□ -1.32
SEC39YLR440C SCC2Q04002 1493 aa6.74□□□□□ -1.33
SEC39YLR440C YPK9Q12697 1472 aa6.74□□□□□ -1.33
SEC39YLR440C TOP1P04786 769 aa6.73□□□□□ -1.33
SEC39YLR440C IFH1P39520 1085 aa6.73□□□□□ -1.33
SEC39YLR440C SNU71P53207 620 aaKnown RBP6.72□□□□□ -1.33
SEC39YLR440C RPO31P04051 1460 aa6.7□□□□□ -1.34
SEC39YLR440C MYO2P19524 1574 aaKnown RBP6.7□□□□□ -1.34
SEC39YLR440C CHD1P32657 1468 aa6.68□□□□□ -1.34
SEC39YLR440C CDC25P04821 1589 aa6.67□□□□□ -1.34
SEC39YLR440C MET5P47169 1442 aa6.66□□□□□ -1.34
SEC39YLR440C DNF1P32660 1571 aa6.65□□□□□ -1.34
SEC39YLR440C PRY3P47033 881 aa6.64□□□□□ -1.35
SEC39YLR440C ORC1P54784 914 aaPredicted RBP6.63□□□□□ -1.35
SEC39YLR440C TY2B-LR1P0C2J3 1770 aa6.62□□□□□ -1.35
SEC39YLR440C TY2B-FP0CX63 1770 aa6.62□□□□□ -1.35
SEC39YLR440C TY2B-GR2P0CX64 1770 aa6.62□□□□□ -1.35
SEC39YLR440C TY2B-CP25384 1770 aa6.62□□□□□ -1.35
SEC39YLR440C TY2B-DR2Q03494 1770 aa6.62□□□□□ -1.35
SEC39YLR440C TY1B-DR1Q03855 1755 aa6.62□□□□□ -1.35
SEC39YLR440C TY2B-DR3Q07791 1770 aaKnown RBP6.62□□□□□ -1.35
SEC39YLR440C TY2B-OR1Q12113 1770 aa6.62□□□□□ -1.35
SEC39YLR440C TY2B-DR1Q12472 1770 aa6.62□□□□□ -1.35
SEC39YLR440C TY2B-OR2Q12501 1770 aa6.62□□□□□ -1.35
SEC39YLR440C ESC1Q03661 1658 aaKnown RBP6.62□□□□□ -1.35
SEC39YLR440C PAN1P32521 1480 aa6.61□□□□□ -1.35
SEC39YLR440C TY1B-BRQ12193 1756 aa6.61□□□□□ -1.35
SEC39YLR440C TY1B-GR3Q12316 1755 aa6.61□□□□□ -1.35
SEC39YLR440C TY1B-ORQ92393 1755 aa6.61□□□□□ -1.35
SEC39YLR440C LTE1P07866 1435 aa6.59□□□□□ -1.35
SEC39YLR440C CWC22P53333 577 aaKnown RBP6.59□□□□□ -1.35
SEC39YLR440C TOP2P06786 1428 aaKnown RBP6.59□□□□□ -1.35
SEC39YLR440C RKR1Q04781 1562 aa6.59□□□□□ -1.36
SEC39YLR440C MIF2P35201 549 aa6.56□□□□□ -1.36
SEC39YLR440C RPA190P10964 1664 aaKnown RBP6.56□□□□□ -1.36
SEC39YLR440C DEF1P35732 738 aaKnown RBP6.56□□□□□ -1.36
SEC39YLR440C MMS22Q06164 1454 aa6.55□□□□□ -1.36
SEC39YLR440C TY2B-BQ12491 1770 aa6.54□□□□□ -1.36
SEC39YLR440C MDG1P53885 366 aa6.53□□□□□ -1.36
SEC39YLR440C TY1B-HO13535 1793 aa6.53□□□□□ -1.36
SEC39YLR440C TY1B-DR5P0C2I2 1755 aa6.53□□□□□ -1.36
SEC39YLR440C TY1B-DR6P0C2I3 1755 aa6.53□□□□□ -1.36
SEC39YLR440C TY1B-LR2P0C2I5 1755 aa6.53□□□□□ -1.36
SEC39YLR440C TY1B-LR3P0C2I6 1755 aaKnown RBP6.53□□□□□ -1.36
SEC39YLR440C TY1B-PR1P0C2I9 1755 aaKnown RBP6.53□□□□□ -1.36
SEC39YLR440C TY1B-PR2P0C2J0 1756 aa6.53□□□□□ -1.36
SEC39YLR440C TY1B-PR3P0C2J1 1755 aaKnown RBP6.53□□□□□ -1.36
Retrieved 100 of 5,963 RNA–protein pairs in 13.1 ms