RNA–Protein interactions for RNA: YHR150W

PEX28, Transcript of Peroxisomal integral membrane peroxin, yeastyeast

Gene PEX28, Length 1,740 nt, Biotype protein coding, Subcellular localisation Peroxisome .

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PEX28YHR150W SGS1P35187 1447 aa13.04□□□□□ -0.32
PEX28YHR150W INO80P53115 1489 aa12.71□□□□□ -0.37
PEX28YHR150W TCB3Q03640 1545 aaKnown RBP12.58□□□□□ -0.4
PEX28YHR150W SPA2P23201 1466 aaKnown RBP12.4□□□□□ -0.42
PEX28YHR150W SSN2P38931 1420 aa12.4□□□□□ -0.42
PEX28YHR150W MON2P48563 1636 aaPredicted RBP12.36□□□□□ -0.43
PEX28YHR150W TY1B-DR4Q07793 1604 aa12.35□□□□□ -0.43
PEX28YHR150W SPT6P23615 1451 aaKnown RBP12.18□□□□□ -0.46
PEX28YHR150W HSL1P34244 1518 aa12.17□□□□□ -0.46
PEX28YHR150W DRS1P32892 752 aaKnown RBP12.17□□□□□ -0.46
PEX28YHR150W SWR1Q05471 1514 aa12.16□□□□□ -0.46
PEX28YHR150W HIR3P47171 1648 aa11.97□□□□□ -0.49
PEX28YHR150W XRN1P22147 1528 aaKnown RBP11.94□□□□□ -0.5
PEX28YHR150W DNA2P38859 1522 aa11.85□□□□□ -0.51
PEX28YHR150W KOG1P38873 1557 aa11.78□□□□□ -0.52
PEX28YHR150W REV3P14284 1504 aa11.73□□□□□ -0.53
PEX28YHR150W TAF2P23255 1407 aa11.72□□□□□ -0.53
PEX28YHR150W ECM5Q03214 1411 aa11.61□□□□□ -0.55
PEX28YHR150W BUD4P47136 1447 aa11.61□□□□□ -0.55
PEX28YHR150W THO2P53552 1597 aaKnown RBP11.59□□□□□ -0.55
PEX28YHR150W SIN3P22579 1536 aa11.57□□□□□ -0.56
PEX28YHR150W SSK2P53599 1579 aa11.54□□□□□ -0.56
PEX28YHR150W SKI3P17883 1432 aaKnown RBP11.52□□□□□ -0.57
PEX28YHR150W ESP1Q03018 1630 aa11.43□□□□□ -0.58
PEX28YHR150W MYO2P19524 1574 aaKnown RBP11.41□□□□□ -0.58
PEX28YHR150W ATG2P53855 1592 aa11.41□□□□□ -0.58
PEX28YHR150W MDS3P53094 1487 aa11.38□□□□□ -0.59
PEX28YHR150W PEP1P32319 1579 aa11.3□□□□□ -0.6
PEX28YHR150W YPK9Q12697 1472 aa11.3□□□□□ -0.6
PEX28YHR150W STU1P38198 1513 aa11.25□□□□□ -0.61
PEX28YHR150W POL1P13382 1468 aa11.24□□□□□ -0.61
PEX28YHR150W SCC2Q04002 1493 aa11.21□□□□□ -0.62
PEX28YHR150W MMS22Q06164 1454 aa11.2□□□□□ -0.62
PEX28YHR150W CHD1P32657 1468 aa11.19□□□□□ -0.62
PEX28YHR150W UFD4P33202 1483 aa11.18□□□□□ -0.62
PEX28YHR150W YTA7P40340 1379 aa11.18□□□□□ -0.62
PEX28YHR150W MTC1P47018 478 aaKnown RBP11.16□□□□□ -0.62
PEX28YHR150W SAS10Q12136 610 aaPredicted RBP11.16□□□□□ -0.62
PEX28YHR150W RPO31P04051 1460 aa11.14□□□□□ -0.63
PEX28YHR150W RKR1Q04781 1562 aa11.14□□□□□ -0.63
PEX28YHR150W RQC2Q12532 1038 aaKnown RBP11.12□□□□□ -0.63
PEX28YHR150W YOR1P53049 1477 aa11.1□□□□□ -0.63
PEX28YHR150W TOP2P06786 1428 aaKnown RBP11.1□□□□□ -0.63
PEX28YHR150W RSE1Q04693 1361 aaKnown RBP11.08□□□□□ -0.64
PEX28YHR150W BPT1P14772 1559 aa11.08□□□□□ -0.64
PEX28YHR150W YCF1P39109 1515 aaKnown RBP11.05□□□□□ -0.64
PEX28YHR150W SMC4Q12267 1418 aa11.04□□□□□ -0.64
PEX28YHR150W MYO4P32492 1471 aa10.98□□□□□ -0.65
PEX28YHR150W TAF7Q05021 590 aa10.94□□□□□ -0.66
PEX28YHR150W TY2B-LR1P0C2J3 1770 aa10.94□□□□□ -0.66
PEX28YHR150W TY2B-FP0CX63 1770 aa10.94□□□□□ -0.66
PEX28YHR150W TY2B-GR2P0CX64 1770 aa10.94□□□□□ -0.66
PEX28YHR150W TY2B-CP25384 1770 aa10.94□□□□□ -0.66
PEX28YHR150W TY2B-DR2Q03494 1770 aa10.94□□□□□ -0.66
PEX28YHR150W TY1B-DR1Q03855 1755 aa10.94□□□□□ -0.66
PEX28YHR150W TY2B-DR3Q07791 1770 aaKnown RBP10.94□□□□□ -0.66
PEX28YHR150W TY2B-OR1Q12113 1770 aa10.94□□□□□ -0.66
PEX28YHR150W TY2B-DR1Q12472 1770 aa10.94□□□□□ -0.66
PEX28YHR150W TY2B-OR2Q12501 1770 aa10.94□□□□□ -0.66
PEX28YHR150W STH1P32597 1359 aa10.92□□□□□ -0.66
PEX28YHR150W SPP41P38904 1435 aa10.88□□□□□ -0.67
PEX28YHR150W TY1B-DR3Q99231 1755 aa10.87□□□□□ -0.67
PEX28YHR150W IFH1P39520 1085 aa10.87□□□□□ -0.67
PEX28YHR150W SNQ2P32568 1501 aaKnown RBP10.86□□□□□ -0.67
PEX28YHR150W TY2B-BQ12491 1770 aa10.84□□□□□ -0.67
PEX28YHR150W TRM732Q03496 1420 aa10.83□□□□□ -0.68
PEX28YHR150W CDC25P04821 1589 aa10.82□□□□□ -0.68
PEX28YHR150W PAN1P32521 1480 aa10.8□□□□□ -0.68
PEX28YHR150W TSC11P40061 1430 aa10.79□□□□□ -0.68
PEX28YHR150W TY1B-BRQ12193 1756 aa10.77□□□□□ -0.68
PEX28YHR150W TY1B-GR3Q12316 1755 aa10.77□□□□□ -0.68
PEX28YHR150W TY1B-ORQ92393 1755 aa10.77□□□□□ -0.68
PEX28YHR150W TY1B-HO13535 1793 aa10.76□□□□□ -0.69
PEX28YHR150W TY1B-DR5P0C2I2 1755 aa10.76□□□□□ -0.69
PEX28YHR150W TY1B-DR6P0C2I3 1755 aa10.76□□□□□ -0.69
PEX28YHR150W TY1B-LR2P0C2I5 1755 aa10.76□□□□□ -0.69
PEX28YHR150W TY1B-LR3P0C2I6 1755 aaKnown RBP10.76□□□□□ -0.69
PEX28YHR150W TY1B-PR1P0C2I9 1755 aaKnown RBP10.76□□□□□ -0.69
PEX28YHR150W TY1B-PR2P0C2J0 1756 aa10.76□□□□□ -0.69
PEX28YHR150W TY1B-PR3P0C2J1 1755 aaKnown RBP10.76□□□□□ -0.69
PEX28YHR150W TY1B-JR1P47098 1755 aa10.76□□□□□ -0.69
PEX28YHR150W TY1B-ML2Q03434 1755 aaKnown RBP10.76□□□□□ -0.69
PEX28YHR150W TY1B-ER1Q03612 1755 aa10.76□□□□□ -0.69
PEX28YHR150W TY1B-ML1Q04711 1755 aaKnown RBP10.76□□□□□ -0.69
PEX28YHR150W TY1B-GR2Q12269 1755 aa10.76□□□□□ -0.69
PEX28YHR150W TY1B-OLQ12273 1755 aa10.76□□□□□ -0.69
PEX28YHR150W TY1B-PLQ12414 1755 aaKnown RBP10.76□□□□□ -0.69
PEX28YHR150W IKI3Q06706 1349 aaKnown RBP10.76□□□□□ -0.69
PEX28YHR150W VTH1P40438 1549 aa10.75□□□□□ -0.69
PEX28YHR150W VTH2P40890 1549 aa10.75□□□□□ -0.69
PEX28YHR150W RTT106P40161 455 aa10.75□□□□□ -0.69
PEX28YHR150W PDR15Q04182 1529 aaKnown RBP10.73□□□□□ -0.69
PEX28YHR150W MLP2P40457 1679 aa10.72□□□□□ -0.69
PEX28YHR150W GEA1P47102 1408 aaPredicted RBP10.69□□□□□ -0.7
PEX28YHR150W ESC1Q03661 1658 aaKnown RBP10.68□□□□□ -0.7
PEX28YHR150W DNF1P32660 1571 aa10.65□□□□□ -0.7
PEX28YHR150W SNT2P53127 1403 aa10.64□□□□□ -0.71
PEX28YHR150W ULS1Q08562 1619 aa10.64□□□□□ -0.71
PEX28YHR150W SSM4P40318 1319 aa10.63□□□□□ -0.71
PEX28YHR150W NUP170P38181 1502 aa10.6□□□□□ -0.71
Retrieved 100 of 5,963 RNA–protein pairs in 29.7 ms