RNA–Protein interactions for RNA: YHR113W

APE4, Transcript of Cytoplasmic aspartyl aminopeptidase with possible vacuole function, yeastyeast

Gene APE4, Length 1,473 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
APE4YHR113W MON2P48563 1636 aaPredicted RBP13.05□□□□□ -0.32
APE4YHR113W INO80P53115 1489 aa13.03□□□□□ -0.32
APE4YHR113W SGS1P35187 1447 aa12.88□□□□□ -0.35
APE4YHR113W TCB3Q03640 1545 aaKnown RBP12.8□□□□□ -0.36
APE4YHR113W TY1B-DR4Q07793 1604 aa12.7□□□□□ -0.38
APE4YHR113W SWR1Q05471 1514 aa12.63□□□□□ -0.39
APE4YHR113W DNA2P38859 1522 aa12.42□□□□□ -0.42
APE4YHR113W HSL1P34244 1518 aa12.4□□□□□ -0.42
APE4YHR113W SPT6P23615 1451 aaKnown RBP12.38□□□□□ -0.43
APE4YHR113W KOG1P38873 1557 aa12.35□□□□□ -0.43
APE4YHR113W SPA2P23201 1466 aaKnown RBP12.34□□□□□ -0.43
APE4YHR113W DRS1P32892 752 aaKnown RBP12.23□□□□□ -0.45
APE4YHR113W HIR3P47171 1648 aa12.15□□□□□ -0.46
APE4YHR113W SSN2P38931 1420 aa12.1□□□□□ -0.47
APE4YHR113W XRN1P22147 1528 aaKnown RBP12□□□□□ -0.49
APE4YHR113W THO2P53552 1597 aaKnown RBP11.9□□□□□ -0.51
APE4YHR113W BUD4P47136 1447 aa11.88□□□□□ -0.51
APE4YHR113W ECM5Q03214 1411 aa11.86□□□□□ -0.51
APE4YHR113W MTC1P47018 478 aaKnown RBP11.84□□□□□ -0.51
APE4YHR113W REV3P14284 1504 aa11.82□□□□□ -0.52
APE4YHR113W RSE1Q04693 1361 aaKnown RBP11.75□□□□□ -0.53
APE4YHR113W MDS3P53094 1487 aa11.75□□□□□ -0.53
APE4YHR113W TAF2P23255 1407 aa11.69□□□□□ -0.54
APE4YHR113W ATG2P53855 1592 aa11.68□□□□□ -0.54
APE4YHR113W SIN3P22579 1536 aa11.68□□□□□ -0.54
APE4YHR113W PEP1P32319 1579 aa11.62□□□□□ -0.55
APE4YHR113W SSK2P53599 1579 aa11.62□□□□□ -0.55
APE4YHR113W SKI3P17883 1432 aaKnown RBP11.58□□□□□ -0.56
APE4YHR113W ESP1Q03018 1630 aa11.54□□□□□ -0.56
APE4YHR113W MYO2P19524 1574 aaKnown RBP11.48□□□□□ -0.57
APE4YHR113W BPT1P14772 1559 aa11.4□□□□□ -0.58
APE4YHR113W YPK9Q12697 1472 aa11.36□□□□□ -0.59
APE4YHR113W SCC2Q04002 1493 aa11.31□□□□□ -0.6
APE4YHR113W UFD4P33202 1483 aa11.31□□□□□ -0.6
APE4YHR113W YCF1P39109 1515 aaKnown RBP11.22□□□□□ -0.61
APE4YHR113W RPO31P04051 1460 aa11.21□□□□□ -0.62
APE4YHR113W RKR1Q04781 1562 aa11.16□□□□□ -0.62
APE4YHR113W TY2B-LR1P0C2J3 1770 aa11.15□□□□□ -0.62
APE4YHR113W TY2B-FP0CX63 1770 aa11.15□□□□□ -0.62
APE4YHR113W TY2B-GR2P0CX64 1770 aa11.15□□□□□ -0.62
APE4YHR113W TY2B-CP25384 1770 aa11.15□□□□□ -0.62
APE4YHR113W TY2B-DR2Q03494 1770 aa11.15□□□□□ -0.62
APE4YHR113W TY1B-DR1Q03855 1755 aa11.15□□□□□ -0.62
APE4YHR113W TY2B-DR3Q07791 1770 aaKnown RBP11.15□□□□□ -0.62
APE4YHR113W TY2B-OR1Q12113 1770 aa11.15□□□□□ -0.62
APE4YHR113W TY2B-DR1Q12472 1770 aa11.15□□□□□ -0.62
APE4YHR113W TY2B-OR2Q12501 1770 aa11.15□□□□□ -0.62
APE4YHR113W POL1P13382 1468 aa11.14□□□□□ -0.63
APE4YHR113W RQC2Q12532 1038 aaKnown RBP11.13□□□□□ -0.63
APE4YHR113W STU1P38198 1513 aa11.11□□□□□ -0.63
APE4YHR113W CDC25P04821 1589 aa11.09□□□□□ -0.63
APE4YHR113W TOP2P06786 1428 aaKnown RBP11.09□□□□□ -0.63
APE4YHR113W ESC1Q03661 1658 aaKnown RBP11.06□□□□□ -0.64
APE4YHR113W CHD1P32657 1468 aa11.04□□□□□ -0.64
APE4YHR113W YOR1P53049 1477 aa11.04□□□□□ -0.64
APE4YHR113W TY2B-BQ12491 1770 aa11.03□□□□□ -0.64
APE4YHR113W TY1B-DR3Q99231 1755 aa11.03□□□□□ -0.64
APE4YHR113W TY1B-BRQ12193 1756 aa11.03□□□□□ -0.64
APE4YHR113W TY1B-GR3Q12316 1755 aa11.03□□□□□ -0.64
APE4YHR113W TY1B-ORQ92393 1755 aa11.03□□□□□ -0.64
APE4YHR113W SMC4Q12267 1418 aa10.98□□□□□ -0.65
APE4YHR113W TY1B-HO13535 1793 aa10.98□□□□□ -0.65
APE4YHR113W TY1B-DR5P0C2I2 1755 aa10.98□□□□□ -0.65
APE4YHR113W TY1B-DR6P0C2I3 1755 aa10.98□□□□□ -0.65
APE4YHR113W TY1B-LR2P0C2I5 1755 aa10.98□□□□□ -0.65
APE4YHR113W TY1B-LR3P0C2I6 1755 aaKnown RBP10.98□□□□□ -0.65
APE4YHR113W TY1B-PR1P0C2I9 1755 aaKnown RBP10.98□□□□□ -0.65
APE4YHR113W TY1B-PR2P0C2J0 1756 aa10.98□□□□□ -0.65
APE4YHR113W TY1B-PR3P0C2J1 1755 aaKnown RBP10.98□□□□□ -0.65
APE4YHR113W TY1B-JR1P47098 1755 aa10.98□□□□□ -0.65
APE4YHR113W TY1B-ML2Q03434 1755 aaKnown RBP10.98□□□□□ -0.65
APE4YHR113W TY1B-ER1Q03612 1755 aa10.98□□□□□ -0.65
APE4YHR113W TY1B-ML1Q04711 1755 aaKnown RBP10.98□□□□□ -0.65
APE4YHR113W TY1B-GR2Q12269 1755 aa10.98□□□□□ -0.65
APE4YHR113W TY1B-OLQ12273 1755 aa10.98□□□□□ -0.65
APE4YHR113W TY1B-PLQ12414 1755 aaKnown RBP10.98□□□□□ -0.65
APE4YHR113W PAN1P32521 1480 aa10.97□□□□□ -0.65
APE4YHR113W MMS22Q06164 1454 aa10.96□□□□□ -0.65
APE4YHR113W DNF1P32660 1571 aa10.93□□□□□ -0.66
APE4YHR113W SPP41P38904 1435 aa10.9□□□□□ -0.66
APE4YHR113W RPA190P10964 1664 aaKnown RBP10.89□□□□□ -0.67
APE4YHR113W YTA7P40340 1379 aa10.88□□□□□ -0.67
APE4YHR113W TRM732Q03496 1420 aa10.87□□□□□ -0.67
APE4YHR113W MYO4P32492 1471 aa10.86□□□□□ -0.67
APE4YHR113W VTH1P40438 1549 aa10.83□□□□□ -0.68
APE4YHR113W VTH2P40890 1549 aa10.83□□□□□ -0.68
APE4YHR113W NTE1Q04958 1679 aa10.81□□□□□ -0.68
APE4YHR113W TSC11P40061 1430 aa10.79□□□□□ -0.68
APE4YHR113W MET5P47169 1442 aa10.79□□□□□ -0.68
APE4YHR113W TY1B-JR2P47100 1755 aaKnown RBP10.77□□□□□ -0.68
APE4YHR113W TY1B-ER2Q03619 1755 aa10.77□□□□□ -0.68
APE4YHR113W TY1B-MR1Q04214 1755 aa10.77□□□□□ -0.68
APE4YHR113W TY1B-MR2Q04670 1755 aaKnown RBP10.77□□□□□ -0.68
APE4YHR113W TY1B-LR1Q12088 1755 aaKnown RBP10.77□□□□□ -0.68
APE4YHR113W TY1B-NL1Q12112 1755 aa10.77□□□□□ -0.68
APE4YHR113W TY1B-GR1Q12141 1755 aa10.77□□□□□ -0.68
APE4YHR113W TY1B-BLQ12490 1755 aa10.77□□□□□ -0.68
APE4YHR113W BFR2Q06631 534 aaKnown RBP10.76□□□□□ -0.69
APE4YHR113W NUP159P40477 1460 aa10.72□□□□□ -0.69
APE4YHR113W RPO21P04050 1733 aaKnown RBP10.72□□□□□ -0.69
Retrieved 100 of 5,963 RNA–protein pairs in 14.5 ms