RNA–Protein interactions for RNA: YHR027C

RPN1, Transcript of Non-ATPase base subunit of the 19S RP of the 26S proteasome, yeast

Gene RPN1, Length 2,982 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RPN1	YHR027C	BFR2	Q06631	534 aa	Known RBP	4.98	□□□□□ -1.61
RPN1	YHR027C	RQC2	Q12532	1038 aa	Known RBP	4.84	□□□□□ -1.63
RPN1	YHR027C	NOP2	P40991	618 aa	Known RBP	4.67	□□□□□ -1.66
RPN1	YHR027C	EBP2	P36049	427 aa	Known RBP	4.54	□□□□□ -1.68
RPN1	YHR027C	NSR1	P27476	414 aa	Known RBP RIP-Chip data	4.52	□□□□□ -1.69	not detected
RPN1	YHR027C	DRS1	P32892	752 aa	Known RBP	4.52	□□□□□ -1.69
RPN1	YHR027C	URN1	Q06525	465 aa	Known RBP	4.52	□□□□□ -1.69
RPN1	YHR027C	SPA2	P23201	1466 aa	Known RBP	4.51	□□□□□ -1.69
RPN1	YHR027C	SKI3	P17883	1432 aa	Known RBP	4.5	□□□□□ -1.69
RPN1	YHR027C	CAB3	P36076	571 aa		4.48	□□□□□ -1.69
RPN1	YHR027C	SIS2	P36024	562 aa		4.43	□□□□□ -1.7
RPN1	YHR027C	SSN2	P38931	1420 aa		4.37	□□□□□ -1.71
RPN1	YHR027C	YPR148C	Q06523	435 aa		4.35	□□□□□ -1.71
RPN1	YHR027C	TCB3	Q03640	1545 aa	Known RBP	4.29	□□□□□ -1.72
RPN1	YHR027C	SGS1	P35187	1447 aa		4.28	□□□□□ -1.72
RPN1	YHR027C	TAF7	Q05021	590 aa		4.26	□□□□□ -1.73
RPN1	YHR027C	AVT3	P36062	692 aa		4.25	□□□□□ -1.73
RPN1	YHR027C	MTC1	P47018	478 aa	Known RBP	4.24	□□□□□ -1.73
RPN1	YHR027C	YFR016C	P43597	1233 aa	Known RBP	4.23	□□□□□ -1.73
RPN1	YHR027C	ENP1	P38333	483 aa	Known RBP	4.2	□□□□□ -1.74
RPN1	YHR027C	TCB2	P48231	1178 aa		4.2	□□□□□ -1.74
RPN1	YHR027C	CHD1	P32657	1468 aa		4.19	□□□□□ -1.74
RPN1	YHR027C	STH1	P32597	1359 aa		4.17	□□□□□ -1.74
RPN1	YHR027C	UFD4	P33202	1483 aa		4.17	□□□□□ -1.74
RPN1	YHR027C	RPS0B	P46654	252 aa	Known RBP	4.17	□□□□□ -1.74
RPN1	YHR027C	MMS22	Q06164	1454 aa		4.16	□□□□□ -1.74
RPN1	YHR027C	RSE1	Q04693	1361 aa	Known RBP	4.14	□□□□□ -1.75
RPN1	YHR027C	MON2	P48563	1636 aa	Predicted RBP	4.13	□□□□□ -1.75
RPN1	YHR027C	CWC22	P53333	577 aa	Known RBP	4.11	□□□□□ -1.75
RPN1	YHR027C	XRN1	P22147	1528 aa	Known RBP	4.1	□□□□□ -1.75
RPN1	YHR027C	TFA1	P36100	482 aa		4.1	□□□□□ -1.75
RPN1	YHR027C	ECM5	Q03214	1411 aa		4.1	□□□□□ -1.75
RPN1	YHR027C	CLC1	P17891	233 aa		4.08	□□□□□ -1.76
RPN1	YHR027C	IME2	P32581	645 aa		4.08	□□□□□ -1.76
RPN1	YHR027C	SEC3	P33332	1336 aa	Known RBP	4.08	□□□□□ -1.76
RPN1	YHR027C	SPP41	P38904	1435 aa		4.08	□□□□□ -1.76
RPN1	YHR027C	DIP2	Q12220	943 aa	Predicted RBP	4.07	□□□□□ -1.76
RPN1	YHR027C	INO80	P53115	1489 aa		4.07	□□□□□ -1.76
RPN1	YHR027C	PRS1	P32895	427 aa	Known RBP	4.07	□□□□□ -1.76
RPN1	YHR027C	RLF2	Q12495	606 aa		4.07	□□□□□ -1.76
RPN1	YHR027C	PEP1	P32319	1579 aa		4.06	□□□□□ -1.76
RPN1	YHR027C	KRI1	P42846	591 aa	Known RBP	4.06	□□□□□ -1.76
RPN1	YHR027C	NOP53	Q12080	455 aa	Known RBP	4.06	□□□□□ -1.76
RPN1	YHR027C	LEO1	P38439	464 aa		4.05	□□□□□ -1.76
RPN1	YHR027C	SPT7	P35177	1332 aa		4.04	□□□□□ -1.76
RPN1	YHR027C	MNN4	P36044	1178 aa		4.04	□□□□□ -1.76
RPN1	YHR027C	YGR130C	P53278	816 aa		4.04	□□□□□ -1.76
RPN1	YHR027C	NUG1	P40010	520 aa	Known RBP	4.03	□□□□□ -1.76
RPN1	YHR027C	TRM732	Q03496	1420 aa		4.03	□□□□□ -1.76
RPN1	YHR027C	YRB30	P53107	440 aa	Predicted RBP	4.03	□□□□□ -1.76
RPN1	YHR027C	ENV11	P53246	860 aa		4.03	□□□□□ -1.76
RPN1	YHR027C	OPY1	P38271	328 aa		4.02	□□□□□ -1.77
RPN1	YHR027C	QCR6	P00127	147 aa		4.02	□□□□□ -1.77
RPN1	YHR027C	SPT21	P35209	758 aa		4	□□□□□ -1.77
RPN1	YHR027C	NUP170	P38181	1502 aa		4	□□□□□ -1.77
RPN1	YHR027C	FPR3	P38911	411 aa	Known RBP	4	□□□□□ -1.77
RPN1	YHR027C	AIM44	Q99299	758 aa		4	□□□□□ -1.77
RPN1	YHR027C	POL5	P39985	1022 aa	Known RBP	3.99	□□□□□ -1.77
RPN1	YHR027C	PDR10	P51533	1564 aa		3.99	□□□□□ -1.77
RPN1	YHR027C	CFT1	Q06632	1357 aa	Known RBP	3.99	□□□□□ -1.77
RPN1	YHR027C	SRB8	P25648	1427 aa		3.98	□□□□□ -1.77
RPN1	YHR027C	DEF1	P35732	738 aa	Known RBP	3.98	□□□□□ -1.77
RPN1	YHR027C	IKI3	Q06706	1349 aa	Known RBP	3.98	□□□□□ -1.77
RPN1	YHR027C	TOP2	P06786	1428 aa	Known RBP	3.97	□□□□□ -1.77
RPN1	YHR027C	YLR419W	Q06698	1435 aa	Known RBP	3.96	□□□□□ -1.78
RPN1	YHR027C	THO2	P53552	1597 aa	Known RBP	3.96	□□□□□ -1.78
RPN1	YHR027C	BUD4	P47136	1447 aa		3.96	□□□□□ -1.78
RPN1	YHR027C	MLP2	P40457	1679 aa		3.95	□□□□□ -1.78
RPN1	YHR027C	YTA7	P40340	1379 aa		3.95	□□□□□ -1.78
RPN1	YHR027C	SNF7	P39929	240 aa	Known RBP	3.95	□□□□□ -1.78
RPN1	YHR027C	EAF7	P53911	425 aa	Known RBP	3.94	□□□□□ -1.78
RPN1	YHR027C	FPR4	Q06205	392 aa	Predicted RBP	3.93	□□□□□ -1.78
RPN1	YHR027C	MYO4	P32492	1471 aa		3.93	□□□□□ -1.78
RPN1	YHR027C	SPC110	P32380	944 aa		3.93	□□□□□ -1.78
RPN1	YHR027C	YPK9	Q12697	1472 aa		3.92	□□□□□ -1.78
RPN1	YHR027C	SSM4	P40318	1319 aa		3.92	□□□□□ -1.78
RPN1	YHR027C	RIX1	P38883	763 aa	Predicted RBP	3.92	□□□□□ -1.78
RPN1	YHR027C	IRC20	Q06554	1556 aa		3.92	□□□□□ -1.78
RPN1	YHR027C	MMS1	Q06211	1407 aa		3.92	□□□□□ -1.78
RPN1	YHR027C	PAF1	P38351	445 aa		3.92	□□□□□ -1.78
RPN1	YHR027C	MYO2	P19524	1574 aa	Known RBP	3.92	□□□□□ -1.78
RPN1	YHR027C	RPC31	P17890	251 aa		3.91	□□□□□ -1.78
RPN1	YHR027C	RNA1	P11745	407 aa	Known RBP	3.9	□□□□□ -1.79
RPN1	YHR027C	ROX1	P25042	368 aa		3.9	□□□□□ -1.79
RPN1	YHR027C	VPS4	P52917	437 aa		3.9	□□□□□ -1.79
RPN1	YHR027C	PLP2	Q12017	286 aa		3.9	□□□□□ -1.79
RPN1	YHR027C	STU1	P38198	1513 aa		3.89	□□□□□ -1.79
RPN1	YHR027C	SPT2	P06843	333 aa	Predicted RBP	3.89	□□□□□ -1.79
RPN1	YHR027C	YIR014W	P40570	242 aa		3.89	□□□□□ -1.79
RPN1	YHR027C	IOC4	Q04213	475 aa		3.88	□□□□□ -1.79
RPN1	YHR027C	SAS10	Q12136	610 aa	Predicted RBP	3.88	□□□□□ -1.79
RPN1	YHR027C	PSH1	Q12161	406 aa		3.88	□□□□□ -1.79
RPN1	YHR027C	HSP82	P02829	709 aa	Known RBP	3.88	□□□□□ -1.79
RPN1	YHR027C	NMD2	P38798	1089 aa	Known RBP	3.88	□□□□□ -1.79
RPN1	YHR027C	SLN1	P39928	1220 aa	Predicted RBP	3.88	□□□□□ -1.79
RPN1	YHR027C	NAP1	P25293	417 aa	Known RBP	3.87	□□□□□ -1.79
RPN1	YHR027C	CTR9	P89105	1077 aa		3.87	□□□□□ -1.79
RPN1	YHR027C	SPT6	P23615	1451 aa	Known RBP	3.87	□□□□□ -1.79
RPN1	YHR027C	YNL011C	P53980	444 aa		3.87	□□□□□ -1.79
RPN1	YHR027C	EDE1	P34216	1381 aa		3.87	□□□□□ -1.79

Retrieved 100 of 5,963 RNA–protein pairs in 81.7 ms