RNA–Protein interactions for RNA: YFR024C-A

LSB3, Transcript of Protein containing a C-terminal SH3 domain, yeastyeast

Gene LSB3, Length 1,380 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
LSB3YFR024C-A MON2P48563 1636 aaPredicted RBP18.25■□□□□ 0.51
LSB3YFR024C-A INO80P53115 1489 aa18.14■□□□□ 0.49
LSB3YFR024C-A TCB3Q03640 1545 aaKnown RBP17.74■□□□□ 0.43
LSB3YFR024C-A SGS1P35187 1447 aa17.71■□□□□ 0.42
LSB3YFR024C-A TY1B-DR4Q07793 1604 aa17.61■□□□□ 0.41
LSB3YFR024C-A SWR1Q05471 1514 aa17.54■□□□□ 0.4
LSB3YFR024C-A DNA2P38859 1522 aa17.32■□□□□ 0.36
LSB3YFR024C-A KOG1P38873 1557 aa17.2■□□□□ 0.34
LSB3YFR024C-A HSL1P34244 1518 aa17.1■□□□□ 0.33
LSB3YFR024C-A SPT6P23615 1451 aaKnown RBP17.06■□□□□ 0.32
LSB3YFR024C-A SPA2P23201 1466 aaKnown RBP16.92■□□□□ 0.3
LSB3YFR024C-A HIR3P47171 1648 aa16.74■□□□□ 0.27
LSB3YFR024C-A SSN2P38931 1420 aa16.54■□□□□ 0.24
LSB3YFR024C-A THO2P53552 1597 aaKnown RBP16.5■□□□□ 0.23
LSB3YFR024C-A XRN1P22147 1528 aaKnown RBP16.48■□□□□ 0.23
LSB3YFR024C-A BUD4P47136 1447 aa16.44■□□□□ 0.22
LSB3YFR024C-A ECM5Q03214 1411 aa16.44■□□□□ 0.22
LSB3YFR024C-A RSE1Q04693 1361 aaKnown RBP16.39■□□□□ 0.21
LSB3YFR024C-A MDS3P53094 1487 aa16.25■□□□□ 0.19
LSB3YFR024C-A REV3P14284 1504 aa16.24■□□□□ 0.19
LSB3YFR024C-A ATG2P53855 1592 aa16.13■□□□□ 0.17
LSB3YFR024C-A PEP1P32319 1579 aa16.12■□□□□ 0.17
LSB3YFR024C-A SIN3P22579 1536 aa16.12■□□□□ 0.17
LSB3YFR024C-A SSK2P53599 1579 aa15.97■□□□□ 0.15
LSB3YFR024C-A DRS1P32892 752 aaKnown RBP15.96■□□□□ 0.15
LSB3YFR024C-A TAF2P23255 1407 aa15.95■□□□□ 0.14
LSB3YFR024C-A SKI3P17883 1432 aaKnown RBP15.87■□□□□ 0.13
LSB3YFR024C-A ESP1Q03018 1630 aa15.87■□□□□ 0.13
LSB3YFR024C-A BPT1P14772 1559 aa15.78■□□□□ 0.12
LSB3YFR024C-A MYO2P19524 1574 aaKnown RBP15.74■□□□□ 0.11
LSB3YFR024C-A MTC1P47018 478 aaKnown RBP15.74■□□□□ 0.11
LSB3YFR024C-A YPK9Q12697 1472 aa15.66■□□□□ 0.1
LSB3YFR024C-A SCC2Q04002 1493 aa15.58■□□□□ 0.08
LSB3YFR024C-A UFD4P33202 1483 aa15.57■□□□□ 0.08
LSB3YFR024C-A YCF1P39109 1515 aaKnown RBP15.54■□□□□ 0.08
LSB3YFR024C-A RPO31P04051 1460 aa15.5■□□□□ 0.07
LSB3YFR024C-A TY2B-LR1P0C2J3 1770 aa15.37■□□□□ 0.05
LSB3YFR024C-A TY2B-FP0CX63 1770 aa15.37■□□□□ 0.05
LSB3YFR024C-A TY2B-GR2P0CX64 1770 aa15.37■□□□□ 0.05
LSB3YFR024C-A TY2B-CP25384 1770 aa15.37■□□□□ 0.05
LSB3YFR024C-A TY2B-DR2Q03494 1770 aa15.37■□□□□ 0.05
LSB3YFR024C-A TY1B-DR1Q03855 1755 aa15.37■□□□□ 0.05
LSB3YFR024C-A TY2B-DR3Q07791 1770 aaKnown RBP15.37■□□□□ 0.05
LSB3YFR024C-A TY2B-OR1Q12113 1770 aa15.37■□□□□ 0.05
LSB3YFR024C-A TY2B-DR1Q12472 1770 aa15.37■□□□□ 0.05
LSB3YFR024C-A TY2B-OR2Q12501 1770 aa15.37■□□□□ 0.05
LSB3YFR024C-A CDC25P04821 1589 aa15.31■□□□□ 0.04
LSB3YFR024C-A POL1P13382 1468 aa15.31■□□□□ 0.04
LSB3YFR024C-A TOP2P06786 1428 aaKnown RBP15.3■□□□□ 0.04
LSB3YFR024C-A RKR1Q04781 1562 aa15.28■□□□□ 0.04
LSB3YFR024C-A CHD1P32657 1468 aa15.28■□□□□ 0.04
LSB3YFR024C-A TY1B-BRQ12193 1756 aa15.25■□□□□ 0.03
LSB3YFR024C-A TY1B-GR3Q12316 1755 aa15.25■□□□□ 0.03
LSB3YFR024C-A TY1B-ORQ92393 1755 aa15.25■□□□□ 0.03
LSB3YFR024C-A ESC1Q03661 1658 aaKnown RBP15.2■□□□□ 0.02
LSB3YFR024C-A TY2B-BQ12491 1770 aa15.19■□□□□ 0.02
LSB3YFR024C-A TY1B-DR3Q99231 1755 aa15.19■□□□□ 0.02
LSB3YFR024C-A STU1P38198 1513 aa15.16■□□□□ 0.02
LSB3YFR024C-A PAN1P32521 1480 aa15.16■□□□□ 0.02
LSB3YFR024C-A YOR1P53049 1477 aa15.15■□□□□ 0.02
LSB3YFR024C-A TY1B-HO13535 1793 aa15.15■□□□□ 0.02
LSB3YFR024C-A TY1B-DR5P0C2I2 1755 aa15.15■□□□□ 0.02
LSB3YFR024C-A TY1B-DR6P0C2I3 1755 aa15.15■□□□□ 0.02
LSB3YFR024C-A TY1B-LR2P0C2I5 1755 aa15.15■□□□□ 0.02
LSB3YFR024C-A TY1B-LR3P0C2I6 1755 aaKnown RBP15.15■□□□□ 0.02
LSB3YFR024C-A TY1B-PR1P0C2I9 1755 aaKnown RBP15.15■□□□□ 0.02
LSB3YFR024C-A TY1B-PR2P0C2J0 1756 aa15.15■□□□□ 0.02
LSB3YFR024C-A TY1B-PR3P0C2J1 1755 aaKnown RBP15.15■□□□□ 0.02
LSB3YFR024C-A TY1B-JR1P47098 1755 aa15.15■□□□□ 0.02
LSB3YFR024C-A TY1B-ML2Q03434 1755 aaKnown RBP15.15■□□□□ 0.02
LSB3YFR024C-A TY1B-ER1Q03612 1755 aa15.15■□□□□ 0.02
LSB3YFR024C-A TY1B-ML1Q04711 1755 aaKnown RBP15.15■□□□□ 0.02
LSB3YFR024C-A TY1B-GR2Q12269 1755 aa15.15■□□□□ 0.02
LSB3YFR024C-A TY1B-OLQ12273 1755 aa15.15■□□□□ 0.02
LSB3YFR024C-A TY1B-PLQ12414 1755 aaKnown RBP15.15■□□□□ 0.02
LSB3YFR024C-A DNF1P32660 1571 aa15.13■□□□□ 0.01
LSB3YFR024C-A RQC2Q12532 1038 aaKnown RBP15.13■□□□□ 0.01
LSB3YFR024C-A SMC4Q12267 1418 aa15.12■□□□□ 0.01
LSB3YFR024C-A MMS22Q06164 1454 aa15.09■□□□□ 0.01
LSB3YFR024C-A MET5P47169 1442 aa15.05■□□□□ -0
LSB3YFR024C-A RPA190P10964 1664 aaKnown RBP15.05■□□□□ -0
LSB3YFR024C-A SPP41P38904 1435 aa14.98□□□□□ -0.01
LSB3YFR024C-A TRM732Q03496 1420 aa14.95□□□□□ -0.02
LSB3YFR024C-A YTA7P40340 1379 aa14.9□□□□□ -0.02
LSB3YFR024C-A MYO4P32492 1471 aa14.89□□□□□ -0.03
LSB3YFR024C-A VTH1P40438 1549 aa14.88□□□□□ -0.03
LSB3YFR024C-A VTH2P40890 1549 aa14.88□□□□□ -0.03
LSB3YFR024C-A TY1B-JR2P47100 1755 aaKnown RBP14.86□□□□□ -0.03
LSB3YFR024C-A TY1B-ER2Q03619 1755 aa14.86□□□□□ -0.03
LSB3YFR024C-A TY1B-MR1Q04214 1755 aa14.86□□□□□ -0.03
LSB3YFR024C-A TY1B-MR2Q04670 1755 aaKnown RBP14.86□□□□□ -0.03
LSB3YFR024C-A TY1B-LR1Q12088 1755 aaKnown RBP14.86□□□□□ -0.03
LSB3YFR024C-A TY1B-NL1Q12112 1755 aa14.86□□□□□ -0.03
LSB3YFR024C-A TY1B-GR1Q12141 1755 aa14.86□□□□□ -0.03
LSB3YFR024C-A TY1B-BLQ12490 1755 aa14.86□□□□□ -0.03
LSB3YFR024C-A TSC11P40061 1430 aa14.86□□□□□ -0.03
LSB3YFR024C-A NTE1Q04958 1679 aa14.84□□□□□ -0.03
LSB3YFR024C-A LTE1P07866 1435 aa14.83□□□□□ -0.04
LSB3YFR024C-A NUP159P40477 1460 aa14.79□□□□□ -0.04
LSB3YFR024C-A RPO21P04050 1733 aaKnown RBP14.76□□□□□ -0.05
Retrieved 100 of 5,963 RNA–protein pairs in 11.9 ms