RNA–Protein interactions for RNA: YER096W

SHC1, Transcript of Sporulation-specific activator of Chs3p (chitin synthase III), yeastyeast

Gene SHC1, Length 1,539 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SHC1YER096W SGS1P35187 1447 aa14.64□□□□□ -0.07
SHC1YER096W MON2P48563 1636 aaPredicted RBP14.49□□□□□ -0.09
SHC1YER096W INO80P53115 1489 aa14.43□□□□□ -0.1
SHC1YER096W TY1B-DR4Q07793 1604 aa14.36□□□□□ -0.11
SHC1YER096W TCB3Q03640 1545 aaKnown RBP14.36□□□□□ -0.11
SHC1YER096W SWR1Q05471 1514 aa14.1□□□□□ -0.15
SHC1YER096W HSL1P34244 1518 aa13.99□□□□□ -0.17
SHC1YER096W SSN2P38931 1420 aa13.91□□□□□ -0.18
SHC1YER096W SPT6P23615 1451 aaKnown RBP13.9□□□□□ -0.18
SHC1YER096W SPA2P23201 1466 aaKnown RBP13.88□□□□□ -0.19
SHC1YER096W DNA2P38859 1522 aa13.75□□□□□ -0.21
SHC1YER096W HIR3P47171 1648 aa13.72□□□□□ -0.21
SHC1YER096W KOG1P38873 1557 aa13.62□□□□□ -0.23
SHC1YER096W XRN1P22147 1528 aaKnown RBP13.53□□□□□ -0.24
SHC1YER096W REV3P14284 1504 aa13.39□□□□□ -0.27
SHC1YER096W THO2P53552 1597 aaKnown RBP13.31□□□□□ -0.28
SHC1YER096W DRS1P32892 752 aaKnown RBP13.3□□□□□ -0.28
SHC1YER096W SIN3P22579 1536 aa13.29□□□□□ -0.28
SHC1YER096W BUD4P47136 1447 aa13.25□□□□□ -0.29
SHC1YER096W ECM5Q03214 1411 aa13.22□□□□□ -0.29
SHC1YER096W SSK2P53599 1579 aa13.21□□□□□ -0.29
SHC1YER096W ATG2P53855 1592 aa13.19□□□□□ -0.3
SHC1YER096W TAF2P23255 1407 aa13.14□□□□□ -0.31
SHC1YER096W PEP1P32319 1579 aa13.11□□□□□ -0.31
SHC1YER096W ESP1Q03018 1630 aa13.11□□□□□ -0.31
SHC1YER096W MDS3P53094 1487 aa13.1□□□□□ -0.31
SHC1YER096W MYO2P19524 1574 aaKnown RBP12.96□□□□□ -0.33
SHC1YER096W SKI3P17883 1432 aaKnown RBP12.94□□□□□ -0.34
SHC1YER096W YPK9Q12697 1472 aa12.85□□□□□ -0.35
SHC1YER096W SCC2Q04002 1493 aa12.8□□□□□ -0.36
SHC1YER096W TY2B-LR1P0C2J3 1770 aa12.71□□□□□ -0.38
SHC1YER096W TY2B-FP0CX63 1770 aa12.71□□□□□ -0.38
SHC1YER096W TY2B-GR2P0CX64 1770 aa12.71□□□□□ -0.38
SHC1YER096W TY2B-CP25384 1770 aa12.71□□□□□ -0.38
SHC1YER096W TY2B-DR2Q03494 1770 aa12.71□□□□□ -0.38
SHC1YER096W TY1B-DR1Q03855 1755 aa12.71□□□□□ -0.38
SHC1YER096W TY2B-DR3Q07791 1770 aaKnown RBP12.71□□□□□ -0.38
SHC1YER096W TY2B-OR1Q12113 1770 aa12.71□□□□□ -0.38
SHC1YER096W TY2B-DR1Q12472 1770 aa12.71□□□□□ -0.38
SHC1YER096W TY2B-OR2Q12501 1770 aa12.71□□□□□ -0.38
SHC1YER096W POL1P13382 1468 aa12.71□□□□□ -0.38
SHC1YER096W RPO31P04051 1460 aa12.7□□□□□ -0.38
SHC1YER096W UFD4P33202 1483 aa12.68□□□□□ -0.38
SHC1YER096W BPT1P14772 1559 aa12.67□□□□□ -0.38
SHC1YER096W RSE1Q04693 1361 aaKnown RBP12.67□□□□□ -0.38
SHC1YER096W RKR1Q04781 1562 aa12.65□□□□□ -0.38
SHC1YER096W STU1P38198 1513 aa12.64□□□□□ -0.39
SHC1YER096W YCF1P39109 1515 aaKnown RBP12.64□□□□□ -0.39
SHC1YER096W TY1B-DR3Q99231 1755 aa12.62□□□□□ -0.39
SHC1YER096W TY2B-BQ12491 1770 aa12.58□□□□□ -0.4
SHC1YER096W YOR1P53049 1477 aa12.55□□□□□ -0.4
SHC1YER096W TY1B-BRQ12193 1756 aa12.55□□□□□ -0.4
SHC1YER096W TY1B-GR3Q12316 1755 aa12.55□□□□□ -0.4
SHC1YER096W TY1B-ORQ92393 1755 aa12.55□□□□□ -0.4
SHC1YER096W TOP2P06786 1428 aaKnown RBP12.54□□□□□ -0.4
SHC1YER096W TY1B-HO13535 1793 aa12.5□□□□□ -0.41
SHC1YER096W TY1B-DR5P0C2I2 1755 aa12.5□□□□□ -0.41
SHC1YER096W TY1B-DR6P0C2I3 1755 aa12.5□□□□□ -0.41
SHC1YER096W TY1B-LR2P0C2I5 1755 aa12.5□□□□□ -0.41
SHC1YER096W TY1B-LR3P0C2I6 1755 aaKnown RBP12.5□□□□□ -0.41
SHC1YER096W TY1B-PR1P0C2I9 1755 aaKnown RBP12.5□□□□□ -0.41
SHC1YER096W TY1B-PR2P0C2J0 1756 aa12.5□□□□□ -0.41
SHC1YER096W TY1B-PR3P0C2J1 1755 aaKnown RBP12.5□□□□□ -0.41
SHC1YER096W TY1B-JR1P47098 1755 aa12.5□□□□□ -0.41
SHC1YER096W TY1B-ML2Q03434 1755 aaKnown RBP12.5□□□□□ -0.41
SHC1YER096W TY1B-ER1Q03612 1755 aa12.5□□□□□ -0.41
SHC1YER096W TY1B-ML1Q04711 1755 aaKnown RBP12.5□□□□□ -0.41
SHC1YER096W TY1B-GR2Q12269 1755 aa12.5□□□□□ -0.41
SHC1YER096W TY1B-OLQ12273 1755 aa12.5□□□□□ -0.41
SHC1YER096W TY1B-PLQ12414 1755 aaKnown RBP12.5□□□□□ -0.41
SHC1YER096W SMC4Q12267 1418 aa12.45□□□□□ -0.42
SHC1YER096W CDC25P04821 1589 aa12.44□□□□□ -0.42
SHC1YER096W CHD1P32657 1468 aa12.37□□□□□ -0.43
SHC1YER096W MYO4P32492 1471 aa12.36□□□□□ -0.43
SHC1YER096W MMS22Q06164 1454 aa12.36□□□□□ -0.43
SHC1YER096W ESC1Q03661 1658 aaKnown RBP12.35□□□□□ -0.43
SHC1YER096W YTA7P40340 1379 aa12.34□□□□□ -0.43
SHC1YER096W MTC1P47018 478 aaKnown RBP12.3□□□□□ -0.44
SHC1YER096W DNF1P32660 1571 aa12.3□□□□□ -0.44
SHC1YER096W PAN1P32521 1480 aa12.29□□□□□ -0.44
SHC1YER096W RPA190P10964 1664 aaKnown RBP12.28□□□□□ -0.44
SHC1YER096W TY1B-JR2P47100 1755 aaKnown RBP12.28□□□□□ -0.44
SHC1YER096W TY1B-ER2Q03619 1755 aa12.28□□□□□ -0.44
SHC1YER096W TY1B-MR1Q04214 1755 aa12.28□□□□□ -0.44
SHC1YER096W TY1B-MR2Q04670 1755 aaKnown RBP12.28□□□□□ -0.44
SHC1YER096W TY1B-LR1Q12088 1755 aaKnown RBP12.28□□□□□ -0.44
SHC1YER096W TY1B-NL1Q12112 1755 aa12.28□□□□□ -0.44
SHC1YER096W TY1B-GR1Q12141 1755 aa12.28□□□□□ -0.44
SHC1YER096W TY1B-BLQ12490 1755 aa12.28□□□□□ -0.44
SHC1YER096W SPP41P38904 1435 aa12.27□□□□□ -0.45
SHC1YER096W VTH1P40438 1549 aa12.23□□□□□ -0.45
SHC1YER096W VTH2P40890 1549 aa12.23□□□□□ -0.45
SHC1YER096W RQC2Q12532 1038 aaKnown RBP12.22□□□□□ -0.45
SHC1YER096W SNQ2P32568 1501 aaKnown RBP12.21□□□□□ -0.45
SHC1YER096W MLP2P40457 1679 aa12.19□□□□□ -0.46
SHC1YER096W TSC11P40061 1430 aa12.17□□□□□ -0.46
SHC1YER096W ULS1Q08562 1619 aa12.17□□□□□ -0.46
SHC1YER096W NTE1Q04958 1679 aa12.17□□□□□ -0.46
SHC1YER096W RPO21P04050 1733 aaKnown RBP12.12□□□□□ -0.47
SHC1YER096W PDR15Q04182 1529 aaKnown RBP12.11□□□□□ -0.47
Retrieved 100 of 5,963 RNA–protein pairs in 13.5 ms