RNA–Protein interactions for RNA: YDR328C

SKP1, Transcript of Evolutionarily conserved kinetochore protein, yeast

Gene SKP1, Length 585 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SKP1	YDR328C	SGS1	P35187	1447 aa		13.62	□□□□□ -0.23
SKP1	YDR328C	MON2	P48563	1636 aa	Predicted RBP	13.51	□□□□□ -0.25
SKP1	YDR328C	INO80	P53115	1489 aa		13.46	□□□□□ -0.25
SKP1	YDR328C	TCB3	Q03640	1545 aa	Known RBP	13.4	□□□□□ -0.26
SKP1	YDR328C	TY1B-DR4	Q07793	1604 aa		13.31	□□□□□ -0.28
SKP1	YDR328C	SWR1	Q05471	1514 aa		13.1	□□□□□ -0.31
SKP1	YDR328C	HSL1	P34244	1518 aa		12.96	□□□□□ -0.33
SKP1	YDR328C	SPT6	P23615	1451 aa	Known RBP	12.91	□□□□□ -0.34
SKP1	YDR328C	SSN2	P38931	1420 aa		12.86	□□□□□ -0.35
SKP1	YDR328C	SPA2	P23201	1466 aa	Known RBP	12.85	□□□□□ -0.35
SKP1	YDR328C	DNA2	P38859	1522 aa		12.83	□□□□□ -0.36
SKP1	YDR328C	KOG1	P38873	1557 aa		12.74	□□□□□ -0.37
SKP1	YDR328C	HIR3	P47171	1648 aa		12.71	□□□□□ -0.37
SKP1	YDR328C	XRN1	P22147	1528 aa	Known RBP	12.55	□□□□□ -0.4
SKP1	YDR328C	THO2	P53552	1597 aa	Known RBP	12.39	□□□□□ -0.43
SKP1	YDR328C	DRS1	P32892	752 aa	Known RBP	12.39	□□□□□ -0.43
SKP1	YDR328C	REV3	P14284	1504 aa		12.37	□□□□□ -0.43
SKP1	YDR328C	BUD4	P47136	1447 aa		12.35	□□□□□ -0.43
SKP1	YDR328C	ECM5	Q03214	1411 aa		12.34	□□□□□ -0.43
SKP1	YDR328C	SIN3	P22579	1536 aa		12.32	□□□□□ -0.44
SKP1	YDR328C	SSK2	P53599	1579 aa		12.22	□□□□□ -0.45
SKP1	YDR328C	ATG2	P53855	1592 aa		12.22	□□□□□ -0.45
SKP1	YDR328C	PEP1	P32319	1579 aa		12.18	□□□□□ -0.46
SKP1	YDR328C	MDS3	P53094	1487 aa		12.16	□□□□□ -0.46
SKP1	YDR328C	TAF2	P23255	1407 aa		12.14	□□□□□ -0.47
SKP1	YDR328C	ESP1	Q03018	1630 aa		12.14	□□□□□ -0.47
SKP1	YDR328C	MYO2	P19524	1574 aa	Known RBP	12.02	□□□□□ -0.49
SKP1	YDR328C	SKI3	P17883	1432 aa	Known RBP	12.02	□□□□□ -0.49
SKP1	YDR328C	YPK9	Q12697	1472 aa		11.94	□□□□□ -0.5
SKP1	YDR328C	RSE1	Q04693	1361 aa	Known RBP	11.92	□□□□□ -0.5
SKP1	YDR328C	SCC2	Q04002	1493 aa		11.86	□□□□□ -0.51
SKP1	YDR328C	RPO31	P04051	1460 aa		11.82	□□□□□ -0.52
SKP1	YDR328C	BPT1	P14772	1559 aa		11.8	□□□□□ -0.52
SKP1	YDR328C	UFD4	P33202	1483 aa		11.79	□□□□□ -0.52
SKP1	YDR328C	POL1	P13382	1468 aa		11.78	□□□□□ -0.52
SKP1	YDR328C	TY2B-LR1	P0C2J3	1770 aa		11.74	□□□□□ -0.53
SKP1	YDR328C	TY2B-F	P0CX63	1770 aa		11.74	□□□□□ -0.53
SKP1	YDR328C	TY2B-GR2	P0CX64	1770 aa		11.74	□□□□□ -0.53
SKP1	YDR328C	TY2B-C	P25384	1770 aa		11.74	□□□□□ -0.53
SKP1	YDR328C	TY2B-DR2	Q03494	1770 aa		11.74	□□□□□ -0.53
SKP1	YDR328C	TY1B-DR1	Q03855	1755 aa		11.74	□□□□□ -0.53
SKP1	YDR328C	TY2B-DR3	Q07791	1770 aa	Known RBP	11.74	□□□□□ -0.53
SKP1	YDR328C	TY2B-OR1	Q12113	1770 aa		11.74	□□□□□ -0.53
SKP1	YDR328C	TY2B-DR1	Q12472	1770 aa		11.74	□□□□□ -0.53
SKP1	YDR328C	TY2B-OR2	Q12501	1770 aa		11.74	□□□□□ -0.53
SKP1	YDR328C	YCF1	P39109	1515 aa	Known RBP	11.71	□□□□□ -0.53
SKP1	YDR328C	RKR1	Q04781	1562 aa		11.71	□□□□□ -0.54
SKP1	YDR328C	STU1	P38198	1513 aa		11.68	□□□□□ -0.54
SKP1	YDR328C	TOP2	P06786	1428 aa	Known RBP	11.68	□□□□□ -0.54
SKP1	YDR328C	TY1B-DR3	Q99231	1755 aa		11.64	□□□□□ -0.55
SKP1	YDR328C	YOR1	P53049	1477 aa		11.63	□□□□□ -0.55
SKP1	YDR328C	TY2B-B	Q12491	1770 aa		11.62	□□□□□ -0.55
SKP1	YDR328C	TY1B-BR	Q12193	1756 aa		11.61	□□□□□ -0.55
SKP1	YDR328C	TY1B-GR3	Q12316	1755 aa		11.61	□□□□□ -0.55
SKP1	YDR328C	TY1B-OR	Q92393	1755 aa		11.61	□□□□□ -0.55
SKP1	YDR328C	SMC4	Q12267	1418 aa		11.58	□□□□□ -0.56
SKP1	YDR328C	TY1B-H	O13535	1793 aa		11.56	□□□□□ -0.56
SKP1	YDR328C	TY1B-DR5	P0C2I2	1755 aa		11.56	□□□□□ -0.56
SKP1	YDR328C	TY1B-DR6	P0C2I3	1755 aa		11.56	□□□□□ -0.56
SKP1	YDR328C	TY1B-LR2	P0C2I5	1755 aa		11.56	□□□□□ -0.56
SKP1	YDR328C	TY1B-LR3	P0C2I6	1755 aa	Known RBP	11.56	□□□□□ -0.56
SKP1	YDR328C	TY1B-PR1	P0C2I9	1755 aa	Known RBP	11.56	□□□□□ -0.56
SKP1	YDR328C	TY1B-PR2	P0C2J0	1756 aa		11.56	□□□□□ -0.56
SKP1	YDR328C	TY1B-PR3	P0C2J1	1755 aa	Known RBP	11.56	□□□□□ -0.56
SKP1	YDR328C	TY1B-JR1	P47098	1755 aa		11.56	□□□□□ -0.56
SKP1	YDR328C	TY1B-ML2	Q03434	1755 aa	Known RBP	11.56	□□□□□ -0.56
SKP1	YDR328C	TY1B-ER1	Q03612	1755 aa		11.56	□□□□□ -0.56
SKP1	YDR328C	TY1B-ML1	Q04711	1755 aa	Known RBP	11.56	□□□□□ -0.56
SKP1	YDR328C	TY1B-GR2	Q12269	1755 aa		11.56	□□□□□ -0.56
SKP1	YDR328C	TY1B-OL	Q12273	1755 aa		11.56	□□□□□ -0.56
SKP1	YDR328C	TY1B-PL	Q12414	1755 aa	Known RBP	11.56	□□□□□ -0.56
SKP1	YDR328C	CDC25	P04821	1589 aa		11.55	□□□□□ -0.56
SKP1	YDR328C	MTC1	P47018	478 aa	Known RBP	11.54	□□□□□ -0.56
SKP1	YDR328C	CHD1	P32657	1468 aa		11.53	□□□□□ -0.56
SKP1	YDR328C	YTA7	P40340	1379 aa		11.53	□□□□□ -0.56
SKP1	YDR328C	MYO4	P32492	1471 aa		11.47	□□□□□ -0.57
SKP1	YDR328C	PAN1	P32521	1480 aa		11.45	□□□□□ -0.58
SKP1	YDR328C	MMS22	Q06164	1454 aa		11.45	□□□□□ -0.58
SKP1	YDR328C	ESC1	Q03661	1658 aa	Known RBP	11.43	□□□□□ -0.58
SKP1	YDR328C	DNF1	P32660	1571 aa		11.41	□□□□□ -0.58
SKP1	YDR328C	SPP41	P38904	1435 aa		11.4	□□□□□ -0.58
SKP1	YDR328C	RQC2	Q12532	1038 aa	Known RBP	11.39	□□□□□ -0.59
SKP1	YDR328C	RPA190	P10964	1664 aa	Known RBP	11.38	□□□□□ -0.59
SKP1	YDR328C	TY1B-JR2	P47100	1755 aa	Known RBP	11.36	□□□□□ -0.59
SKP1	YDR328C	TY1B-ER2	Q03619	1755 aa		11.36	□□□□□ -0.59
SKP1	YDR328C	TY1B-MR1	Q04214	1755 aa		11.36	□□□□□ -0.59
SKP1	YDR328C	TY1B-MR2	Q04670	1755 aa	Known RBP	11.36	□□□□□ -0.59
SKP1	YDR328C	TY1B-LR1	Q12088	1755 aa	Known RBP	11.36	□□□□□ -0.59
SKP1	YDR328C	TY1B-NL1	Q12112	1755 aa		11.36	□□□□□ -0.59
SKP1	YDR328C	TY1B-GR1	Q12141	1755 aa		11.36	□□□□□ -0.59
SKP1	YDR328C	TY1B-BL	Q12490	1755 aa		11.36	□□□□□ -0.59
SKP1	YDR328C	VTH1	P40438	1549 aa		11.33	□□□□□ -0.6
SKP1	YDR328C	VTH2	P40890	1549 aa		11.33	□□□□□ -0.6
SKP1	YDR328C	TSC11	P40061	1430 aa		11.33	□□□□□ -0.6
SKP1	YDR328C	SNQ2	P32568	1501 aa	Known RBP	11.29	□□□□□ -0.6
SKP1	YDR328C	TRM732	Q03496	1420 aa		11.27	□□□□□ -0.6
SKP1	YDR328C	MET5	P47169	1442 aa		11.25	□□□□□ -0.61
SKP1	YDR328C	MLP2	P40457	1679 aa		11.24	□□□□□ -0.61
SKP1	YDR328C	NTE1	Q04958	1679 aa		11.24	□□□□□ -0.61
SKP1	YDR328C	RPO21	P04050	1733 aa	Known RBP	11.22	□□□□□ -0.61

Retrieved 100 of 5,963 RNA–protein pairs in 12.3 ms